Dcan017715.1
Basic Information
- Insect
- Drusilla canaliculata
- Gene Symbol
- -
- Assembly
- GCA_027574885.2
- Location
- JAODGA020047886.1:1-3210[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 5.2 7e+02 1.6 2.8 2 21 255 273 255 274 0.93 2 14 3 4e+02 2.4 0.1 1 23 306 328 306 328 0.92 3 14 0.31 42 5.5 0.1 2 11 338 347 337 357 0.88 4 14 2.2 2.9e+02 2.8 2.8 3 19 367 383 366 388 0.92 5 14 0.025 3.3 8.9 0.8 1 23 414 437 414 437 0.97 6 14 0.002 0.27 12.4 1.4 1 23 523 546 523 546 0.95 7 14 0.79 1.1e+02 4.2 4.4 1 23 554 576 554 577 0.94 8 14 0.14 18 6.6 4.5 1 23 579 601 579 601 0.95 9 14 0.0018 0.24 12.5 1.2 2 23 645 667 644 667 0.97 10 14 0.49 66 4.9 0.2 6 23 691 708 684 708 0.91 11 14 6.7e-07 9e-05 23.3 3.9 1 23 729 751 729 751 0.98 12 14 0.076 10 7.4 3.8 1 23 762 784 762 784 0.98 13 14 0.00057 0.077 14.1 0.7 3 23 792 813 792 813 0.97 14 14 0.00069 0.092 13.8 0.6 1 23 833 855 833 855 0.97
Sequence Information
- Coding Sequence
- gTGACTGTAAAAGATCGGATAACAACCAGCCTCTGTGACAAATGCTTCCTCTATGTGAACAAATACGACCACTTTAAGAGCGTTTCCTTGATTAACCAAGTCAAACTTTGTGAACAGCTGAGCCTCTTTGACGCACGCATTTTAGACGAGagtataaacattaaagaaGAAGTTTTATCCGACGAGGATGACGTGGTTTTCATTCCGAAtGActtatcaattaaaattcagATCAATGACTCATACAACAACACTTTGGAGGTGGACAATGACCAACCACCGATTTTGTCTCCGAATTTGCCAACTTGTGACATGTTGCGTACACTGGAGGATGTGCCCACGATTGAGATTGTAGAGGATGGTTTGCCGACGATTGAGACTATTGAGACGATCACTGAAGATGATTCGGATCGCTTGCCGATGCTTGAGCAGGCGACGTCGTTGCCGACTGCATTGAGTCTGCAGGAGTCGCCGCGGCGTAGGAGTACCAGGGTTGCAGAAGCTGTTAATGGACACGCTCATAATGAGTCTAGGGACAAGATTGATTTTGCTGCTGGTTTGCAACTGGCGAAGAAGATGGATAGTATCAATATGGAGCCGTTTACGCGTACGGAGATTCAGTACGAGAAGCGCATGCGCGTCATCTACACGCAGTTATCAGAGTTTAGGTGTGCGTGCCACGATCGGTTGTGTACGTCATTGAAACAGCTCAATACACATCTGCGTAATAGCACCACCGGTGCGGTTTTCCTACCGTCGAGGACGTGCCCCAACTGCTGCACGACCTTCGAAGCGGGTCACTTCACCCGCCATCAGAAGAGTCTACGCGCATGCCGAGCGCCACCTTTCGGGCGGATGCGCGCCGTCGCCAATGCTGTCGAACGTGGCGGTAATAAACACCGCAACTATCAGGCGTTCAGATGCGCTCTCTGCAACGCCTCTGCGCGCCTGATGGAAACATACAGATGGCACATTGACGATCATGTACGCGCCTCTGACGTTGGTAAATTAACCTGCGATGTCTGCGGCAAAAACTTCGCGGGCAATGTATCAGGATACAAGCAGCACTTGCTCAGCAGTTGCGTTATGCAACCCTGCTGCGATATGTGCGACTTAAATTTCGACAGCGTTGAGGAGTTTAAGCAGCATTGTGCGCAGATACATGATGACGAACCAGGAGAGCAGTTTGAGTATATTGTTCCTGGGTATAATATGTTGGAGTTGCCTTTTGTGCCGATGTACGCCTGCGTTGAGTGTAACTTAAAATGCACGCAGGAGTTGTTCCTCACGGAGCATCTCCGCATCGAGCATGGATATGACCAGGAGGCGGCAAAGCGCATCGGTGCGGATTGCTACATTGGTGGGGATACCTCCCTAGAGGGAGGTAATGATATCTCTgcttttgatgaacctgctcCTGATACATCCATTGCTCCTGATACGTCTATTACACCTGGTATTACTGTGCTGGATAAACCGGCGCCGCTTACGCCCGCAACGATGGAGATTGAAGAAAGTAAGCCGactttttttcaattggttGTCAAACGGTTGGGCGAGAAATGTTTCGAGTGTCAGATTTGCTTCAAGAAGATTACCTCCAGGAGTAATATGGCGCGGCATTTTAAACAGGCGCACACGCGTCCGAAGAATGGCACCTTCCACTGCGGTAACTGTCCCATGTTTTTCCAAACTATGCAATGCTTAGAGGAGCATCTCTTGGCGCATCATCTACATTGTTGTCTTGACTGCGGTTTGAAGTGTGACTCATTAGAGGCGTTGGACAAGCATCGGATGAGTCACCTCCGGATATCGCTAACTAGAGACCCGAATACTCTGAATTATAGAAGGTCGAATGACGTTGATGATGAACCGCCGACGTTGACGAGGTCGCAACCCCAGGAGGAGAGTGAGTTGAAGGTTTTACGCAAGCAGTGCAAACTTTGTAAGCGTATGTTTGTCACTACTCGTGGATTAGATCAACATGTGCGGCGCGCGCATCCTGGTGCCGCTCTAAAGAGGGACGCACGTCAACCAGCGCATTTCCCTCAAGATTGTGGGAAATCTGCATGTCGGACGGTGCTAAAGACGGCGCAGGAGTGGGTGACGCATATGCGCATGCACGCCGAAACGGAGGAAAGCGACGATGGTGATAAGTCGTCGTCGAACACCGACTCGGATTACTTCACCTGCAAGCGTTGCTTTAAGGTCTTCTCGACGAAGAGTACTCTACAATTGCACATGCGTAGTCATGGCGCGAGTTACAGTCCGTCGAAGACGAGATACTATTGCAGGATTTGTAAGAAGATATGTCCGTCGCATGCGGCGTATATGGAGCACAAGCAGAGTCATCAGGCGAACAGCAAGCACTGGTGTAAGCATTGCAAAATCGGTTTTATGGATATGTCGGACCTGGAGGCGCACATGCGCGATGAGCACGACGTTTTCCCCATGGGTAATAAACCGATTAAGAAGGAGAAAGACGTGGAGAAGAAGTTTGAGTGTGAAATCTGCGGACGACGGACGGCGACAGCGCATGGTATGGCTGTGCACATGTCGCATCATCGGCCCAAGGTGAAGGCGGCCACTGTGGACAATGACATTCCTATGCTTACGCCGGAGGAAGATGCACCAGGTGTCTTGGAGCACTCGGAGAAAGTTTTTAAGGAGAATACGTTTGTGTGTATTAAGTGCG
- Protein Sequence
- VTVKDRITTSLCDKCFLYVNKYDHFKSVSLINQVKLCEQLSLFDARILDESINIKEEVLSDEDDVVFIPNDLSIKIQINDSYNNTLEVDNDQPPILSPNLPTCDMLRTLEDVPTIEIVEDGLPTIETIETITEDDSDRLPMLEQATSLPTALSLQESPRRRSTRVAEAVNGHAHNESRDKIDFAAGLQLAKKMDSINMEPFTRTEIQYEKRMRVIYTQLSEFRCACHDRLCTSLKQLNTHLRNSTTGAVFLPSRTCPNCCTTFEAGHFTRHQKSLRACRAPPFGRMRAVANAVERGGNKHRNYQAFRCALCNASARLMETYRWHIDDHVRASDVGKLTCDVCGKNFAGNVSGYKQHLLSSCVMQPCCDMCDLNFDSVEEFKQHCAQIHDDEPGEQFEYIVPGYNMLELPFVPMYACVECNLKCTQELFLTEHLRIEHGYDQEAAKRIGADCYIGGDTSLEGGNDISAFDEPAPDTSIAPDTSITPGITVLDKPAPLTPATMEIEESKPTFFQLVVKRLGEKCFECQICFKKITSRSNMARHFKQAHTRPKNGTFHCGNCPMFFQTMQCLEEHLLAHHLHCCLDCGLKCDSLEALDKHRMSHLRISLTRDPNTLNYRRSNDVDDEPPTLTRSQPQEESELKVLRKQCKLCKRMFVTTRGLDQHVRRAHPGAALKRDARQPAHFPQDCGKSACRTVLKTAQEWVTHMRMHAETEESDDGDKSSSNTDSDYFTCKRCFKVFSTKSTLQLHMRSHGASYSPSKTRYYCRICKKICPSHAAYMEHKQSHQANSKHWCKHCKIGFMDMSDLEAHMRDEHDVFPMGNKPIKKEKDVEKKFECEICGRRTATAHGMAVHMSHHRPKVKAATVDNDIPMLTPEEDAPGVLEHSEKVFKENTFVCIKC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -