Dcan026565.1
Basic Information
- Insect
- Drusilla canaliculata
- Gene Symbol
- -
- Assembly
- GCA_027574885.2
- Location
- JAODGA020071103.1:1-1631[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0017 0.22 12.6 0.7 1 23 66 89 66 89 0.97 2 10 8.9e-05 0.012 16.6 2.5 1 23 113 135 113 136 0.96 3 10 0.00011 0.015 16.3 6.8 2 23 145 166 144 166 0.97 4 10 3.2e-05 0.0042 18.1 0.7 1 23 176 198 176 198 0.97 5 10 7.3 9.8e+02 1.2 0.1 1 9 303 311 303 313 0.84 6 10 0.00038 0.051 14.6 0.2 1 23 351 373 351 373 0.97 7 10 0.16 22 6.4 0.1 2 23 383 404 382 404 0.95 8 10 0.00036 0.048 14.7 0.2 1 23 412 434 412 434 0.97 9 10 0.0024 0.32 12.1 1.5 1 23 441 463 441 463 0.96 10 10 2.4 3.2e+02 2.7 0.1 2 13 476 487 475 489 0.81
Sequence Information
- Coding Sequence
- GAATGCAAACACTTCCGGTGTAACCTGTGCAGTGATCAAATTTTTCACGATCGGTTAACGGCAGAACTCCATGTTAATATGAAACATTCCCTTGCGGCACCACACCATCAACCTGGTCTTCCAGGGACACCTTCAAACTCCCCGTTTTTGGGATTTCCTCTTGATTTGGAACACCATGAACGAAATGCTCCTTATTACCAATGTCCATTTTGTCAGAAACTTTTTAAAGATGAATACCTTCAATATGTACATATTCTAAGGGAACACAATCATCGCCTCGCAGGTAGTTTAGCACCACAGCAAGAGCTGAAGCTTTCCAAGCAAGATACCCAAAGGTATCGTTGCAACATATGTCAGAAGAACACGTCGTCAGAGTCCGAACTTGCAACCCATAAAAAACTTCACCACACTAAATTGCGCAGTGTTAGCTTACAATGCGCATATTGCAATGAACACTGCAAATCCCGATCTGATCTAGAGCATCATATGAAGACACACCAGGTATCTTCGACTGGTAAAGGTAAGCACAAATGCAACATCTGCGATGAAATTTTCACCAGTGCGACTACGCTAGCAGAGCACAAACTCTCGCATTGTAAGATCGTTGCTGGAAACAGCTGTACCCAATGTAAAGCTCTTCTCGGGGACGAGCAAAGTTTCTATAACCATCAACTACAACATGGTACATCTTCCTCCGGAGGAAACTCAACCAAAAACATGCTGGCACTACCCGCAAATTGTATAGTATGTTGTCAGACACTCCAAACCGACGTTGAGATCAAACTGCACGCCAGTTTTCATCTCAGACATCTGCGACATCAATCCCACGGTCTTCCAAAGGAATACCTCTGCGCAGTGTGCAACAAACTCTGCGAGAGTACGAATATCCACAGTGTGCCATCAGGTTATGTTTGTACAGACTGTGCGAGAACAACCATAGCTCCACTGAGTTTCCTCAATGGTAATAGTATTGGAAATGGAAACAAGTCACCTCTAAAATCTCCAATTAAATCACCTTCGAAGACAGGCTCACCTTTAGAAAAGCACGTATTTGCTTGCTTAAAATGCCCCAGAACCTTTCCCACAGAAGAAGAGATGCAGTCCCATGCTAGTACCCACATTCTAGAAGGTACCACATCATCTTTGGAGTGTCACCTTTGTAGGAATGTATTACCGTCACCTATTAAACTACAAATTCATCTTATTGAACATAACTTTATGGGGATTGGTCAATATAGATGCTATGTGTGTTCTTTCGTCTTTACAACCGCGACCGGCCTAAGAGGACATATCATAGAACATGGGCCGGATCATCGTCCCTATGAATGCTCAGAATGTACAACAAAGTTCTACTTTGAAACCGAACTAGAAAACCACAAATTTGTACATCTTCAACAAGCTAAGAACTCTTATGAGAAATATGTTGAATGCTCGAAATGTGGTACCTCCGTACCAGATGCCTACTATCCCGATCATCTGCATACCTGTAATGCAACCAATAGCAATGGAAACAGCAACATTAACCAGACatcaattgtaaatataaaagttgaGAAAAACGTGGATTACGATCTACGTTCCGAAATTAAAACCGAAAGTGGCACCGAATGCGATACTCCAATAGTCTAA
- Protein Sequence
- ECKHFRCNLCSDQIFHDRLTAELHVNMKHSLAAPHHQPGLPGTPSNSPFLGFPLDLEHHERNAPYYQCPFCQKLFKDEYLQYVHILREHNHRLAGSLAPQQELKLSKQDTQRYRCNICQKNTSSESELATHKKLHHTKLRSVSLQCAYCNEHCKSRSDLEHHMKTHQVSSTGKGKHKCNICDEIFTSATTLAEHKLSHCKIVAGNSCTQCKALLGDEQSFYNHQLQHGTSSSGGNSTKNMLALPANCIVCCQTLQTDVEIKLHASFHLRHLRHQSHGLPKEYLCAVCNKLCESTNIHSVPSGYVCTDCARTTIAPLSFLNGNSIGNGNKSPLKSPIKSPSKTGSPLEKHVFACLKCPRTFPTEEEMQSHASTHILEGTTSSLECHLCRNVLPSPIKLQIHLIEHNFMGIGQYRCYVCSFVFTTATGLRGHIIEHGPDHRPYECSECTTKFYFETELENHKFVHLQQAKNSYEKYVECSKCGTSVPDAYYPDHLHTCNATNSNGNSNINQTSIVNIKVEKNVDYDLRSEIKTESGTECDTPIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -