Basic Information

Insect: Drosophila yakuba
Gene Symbol: -
Assembly: GCA_016746365.1
Location: NC:14354402-14356222[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 4.7e-08 2.8e-06 27.8 2.8 1 23 86 108 86 108 0.99

2 16 1.9e-05 0.0011 19.6 5.6 1 23 114 136 114 136 0.98

3 16 3.5e-06 0.00021 21.9 3.2 1 23 142 164 142 164 0.99

4 16 5.9e-05 0.0036 18.1 1.7 1 23 170 192 170 192 0.98

5 16 2.3e-06 0.00014 22.5 2.3 1 23 198 220 198 220 0.98

6 16 6.9e-06 0.00042 21.0 4.7 1 23 226 248 226 248 0.98

7 16 5.5e-05 0.0034 18.2 4.7 1 23 254 276 254 276 0.99

8 16 2.6e-06 0.00016 22.3 0.7 1 23 281 303 281 303 0.99

9 16 3.8e-05 0.0023 18.7 2.6 1 23 309 331 309 331 0.98

10 16 0.00023 0.014 16.2 0.4 2 23 338 359 337 359 0.97

11 16 3.4e-05 0.002 18.8 3.6 1 23 365 387 365 387 0.97

12 16 7.5e-05 0.0046 17.7 8.4 1 23 393 415 393 415 0.97

13 16 0.00012 0.007 17.2 2.3 2 23 422 443 421 443 0.96

14 16 0.00038 0.023 15.5 2.6 1 23 449 471 449 471 0.98

15 16 0.00022 0.013 16.3 2.0 1 23 478 500 478 500 0.98

16 16 2.7e-06 0.00016 22.3 4.5 1 22 506 527 506 527 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	4.7e-08	2.8e-06	27.8	2.8	1	23	86	108	86	108	0.99
2	16	1.9e-05	0.0011	19.6	5.6	1	23	114	136	114	136	0.98
3	16	3.5e-06	0.00021	21.9	3.2	1	23	142	164	142	164	0.99
4	16	5.9e-05	0.0036	18.1	1.7	1	23	170	192	170	192	0.98
5	16	2.3e-06	0.00014	22.5	2.3	1	23	198	220	198	220	0.98
6	16	6.9e-06	0.00042	21.0	4.7	1	23	226	248	226	248	0.98
7	16	5.5e-05	0.0034	18.2	4.7	1	23	254	276	254	276	0.99
8	16	2.6e-06	0.00016	22.3	0.7	1	23	281	303	281	303	0.99
9	16	3.8e-05	0.0023	18.7	2.6	1	23	309	331	309	331	0.98
10	16	0.00023	0.014	16.2	0.4	2	23	338	359	337	359	0.97
11	16	3.4e-05	0.002	18.8	3.6	1	23	365	387	365	387	0.97
12	16	7.5e-05	0.0046	17.7	8.4	1	23	393	415	393	415	0.97
13	16	0.00012	0.007	17.2	2.3	2	23	422	443	421	443	0.96
14	16	0.00038	0.023	15.5	2.6	1	23	449	471	449	471	0.98
15	16	0.00022	0.013	16.3	2.0	1	23	478	500	478	500	0.98
16	16	2.7e-06	0.00016	22.3	4.5	1	22	506	527	506	527	0.96

Sequence Information

Coding Sequence: ATGGATTTGGCGATCGTAGACCAATGCCCCGTGAAGAACGAACCACTCGAAGAAGACACATTCGAGGAAGAATTGTGCTCGATTTCTGACTGCGAAATCGAAGAGACCGAAAGTGAAATAAAGATCGAAGAGGCTTGTAATTATGACATCGATTTCGAGCCAGCTAAAAGCATACACCAAAACACCCCGACGAAGCTGAAGGCTTGTAAATCCAAAATAGGACAGAAGCGCCTCTTGCGAAATCGCACAGATACGTTTAAGTGTACTCTTTGCCAAAAGGCGTTTACAAGAAAGGAAAACCTGCAAACGCACTTGCGAACTCACATAGGAGAACGGCCGTTCGAGTGTTCCCACTGCTCCAAGACTTTTGGTAGCAGCTCACATTATAAGCGGCACTTGCTCATACACGCCGAAAACCGACCCTTCAAGTGTCCCCACTGCTCAAAGACTTTCATCCTGAATACATCGCTCAAACAACATCTGCGAATACACACAGGAGAAAGGCCGTTCTCCTGTTCCCAGTGCTCTGCTTCATTTACAGTGAAATCTTCActtcacacacacatgatAGTCCACACTGGCGAACGGCCGTTTAAGTGTACCCAGTGCTCAACGTCTTTTGCGCGGAAATCAAATTTTCAGGAACACTTGCGTGCGCACACAGGAGAACGACCCTTTAAGTGTATTCACTGCCCAAAGGCATTCAAAAGCAATTCGCATCTCCAGGAACACCTGCGAACGCATATGGAGGCACGGCCCTTTGAGTGTTCCCACTGCTCGAAAAGCTTTAAGCTCAAGTCAATCCTTCAAAAGCACTTGCGAACGCACACTGAAGGGTCCTTTAAGTGTACCCAGTGCACGAAGACTTTTGCAGAGAATGCAAGTTTGCAAATTCATCTGCGAGTGCACGCGGGAGAAAACCCGTACGAGTGTTCTCATTGCTCAGAGACCTTTGCAAGCAACTCCACTTTTCAACTGCACTTGCTTAAGCACGCTGGAAAAGAGCCCCTGAAGTGTTCCCAGTGCTCAGCCACTTTTGCAATGAGGTCCCTTCTTCAAATCCACGTACGTTCCCATACAAGAGAGCGAAAGTTTAAGTGCGCCGAGTGCTCCAAATCATTTTTTAGGAAGACACACCTTAAGGAGCACCAGGTAGTTCACACGGGAGGACGGCCCTTTAAGTGTACCCACTGTTCGAAGGATTTCAGACATCGTTCGCATCTACAGGTCCATTTGCAAGATCATACTGGAAAAAAGCCCCTTATGTGTTCCTACTGTTCGAAGGAATTTAAGCTGCATTCGCAACTTCAAGTGCACCTGAGAGACCATACTGGAAAAAGCCCCTTCGAGTGTTCCCACTGCTCAAAGACCTATTTGGCCAAATCGAATCTTCAAATACACTTGCGATCACACACGGGGGAGGAACTGCCTTTTAAGTGTTCCTACTGCTCTAAGAGCTTTGCAAGGAGCGGAGACCATAAGGCACACTTGCTGGTGCACACGGGAGAGAAGCCCTTCAAGTGTTCACACTGTCCAACTAGATTCACTCAGAAATCCAGTCTTAAGCgacaccaaaagaaaaatttatGCGGCAAAGGCTCAAATAGAAAATAG
Protein Sequence: MDLAIVDQCPVKNEPLEEDTFEEELCSISDCEIEETESEIKIEEACNYDIDFEPAKSIHQNTPTKLKACKSKIGQKRLLRNRTDTFKCTLCQKAFTRKENLQTHLRTHIGERPFECSHCSKTFGSSSHYKRHLLIHAENRPFKCPHCSKTFILNTSLKQHLRIHTGERPFSCSQCSASFTVKSSLHTHMIVHTGERPFKCTQCSTSFARKSNFQEHLRAHTGERPFKCIHCPKAFKSNSHLQEHLRTHMEARPFECSHCSKSFKLKSILQKHLRTHTEGSFKCTQCTKTFAENASLQIHLRVHAGENPYECSHCSETFASNSTFQLHLLKHAGKEPLKCSQCSATFAMRSLLQIHVRSHTRERKFKCAECSKSFFRKTHLKEHQVVHTGGRPFKCTHCSKDFRHRSHLQVHLQDHTGKKPLMCSYCSKEFKLHSQLQVHLRDHTGKSPFECSHCSKTYLAKSNLQIHLRSHTGEELPFKCSYCSKSFARSGDHKAHLLVHTGEKPFKCSHCPTRFTQKSSLKRHQKKNLCGKGSNRK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00591823;
90% Identity: iTF_00591823;
80% Identity: -