Dwil000915.1
Basic Information
- Insect
- Drosophila willistoni
- Gene Symbol
- -
- Assembly
- GCA_018902025.1
- Location
- JAFEWB010000697.1:6931010-6932404[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00085 0.069 13.8 0.1 3 23 188 209 186 209 0.96 2 9 2e-05 0.0017 18.9 3.2 1 23 216 239 216 239 0.94 3 9 0.0018 0.15 12.7 2.4 2 23 263 284 262 284 0.96 4 9 0.013 1 10.1 1.1 1 23 290 312 290 312 0.96 5 9 0.0002 0.016 15.8 1.7 1 23 319 342 319 342 0.98 6 9 0.0054 0.44 11.2 3.9 1 23 348 370 348 370 0.98 7 9 1.1e-05 0.00086 19.8 2.4 1 23 376 398 376 398 0.98 8 9 5.8e-05 0.0047 17.4 3.9 1 23 405 427 405 427 0.98 9 9 0.004 0.33 11.6 0.2 1 20 434 453 434 455 0.92
Sequence Information
- Coding Sequence
- ATGTTGACTTTAGCAAATTTAGCCCAATTGTGTCGAATTTGTCTACGTCATCTGCGTGAGACGGGGGGCGTCTGCAACGATCAGAGCCGGGAGCTTAAAAGCATTAGCAATCCTCAATTTGTAGTGCTTCTGAAACAGTGTCTGGCTATCGATGATGATGCACTGGGTATGGACGACTGTAAAGATTTCCCCCATGACATCTGTGCCTTGTGCTATAAGGCCATTGATTACTTTGTAGAATTGTGTCAAGTGGCCAAAGCCAGTGCCGTGACATTGAAACAGCTGAGGAAGCAGCAGCAGCAGCAGGAGAAGAACATTGAGAAAGACTTGGTTGAAAACGTACAGATTTCAGGCGAATTGGAAGTGAAAGAAGAACAGATAGAGGAAGATCAGCAACCACAAGATGATTTCGTCGCCAAGGCGCAGGAAGACAAAGAGGATGCAAAAACAGAATCAGATGCGGATGAAATGGAAATGTCATTAGACGAAGCCCTAAAGCAGCAGCAACAGCCATCTGATCTGTCCATGCCGATGTCCAATAATAAACGAAGGTCTTTGGCCTGCAATCAATGTGGCAAACAAGTCTACAAGTTGCCCTATCTGGAGGCCCACATTCGTAGTGTTCACGAGGGTCATTCAAAGCCATTCCTCTGTGTTCATTGTAAAAAGTCCTTTACACGCTACGAACAGCTTCGCTCTCATGTGCGTAATGTCCATCCGAACTCAAGTTCCAAGCAGCAAGACCATCAGTCATTGGACGAGGAGCAAGAGCAAGTGCAGCGTTTGATTTGCTTGCATTGCAAGCGCAAGTACAGCACGAAAAATGCTTTGGGAGAACATTTAAAGCGCCATGCACAGCATAAGGAGCACATTTGCGAGCATTGCGGCGTAGCCAAGGTCACCCGCACCGAATTGCTAACTCATTTGCGTATCCATAATCCAAGCTGGGAAAAGTTTAAATGCCAACAGTGTCCGCAGCTATTTCGTCATAAATCGGCGATAAGTCGACATGTGCGAGTGGTTCATGAAGGTCAGCGGCGCTTCCAGTGTGCCCATTGCGAGAAACGTTTTGGAACTCATGCATCCCAGCTAAGGCACGAGCGTTTACATACTGGACAGTTGCCCCATCGCTGTGAAATCTGCACCAAGTGTTTTCCGGATGGCGATCGGTTGACCGCTCATATACGAACTCACGACCGAAACTTATGGCCTTTTTCGTGCATGCATTGTGATAAGCCATGCGTCACATTGCAAAATTTGGAGAGACACCTGCAAAGGCACAGCAGCAAGAACCCACCACATATTTGTGCTAACTGCAATCGGTCATTTAGCACAGATGAGATGTTGGCCAATCATAAGGAGGAAGCATGTTCAATTAATGAGAAGACAGCCTGA
- Protein Sequence
- MLTLANLAQLCRICLRHLRETGGVCNDQSRELKSISNPQFVVLLKQCLAIDDDALGMDDCKDFPHDICALCYKAIDYFVELCQVAKASAVTLKQLRKQQQQQEKNIEKDLVENVQISGELEVKEEQIEEDQQPQDDFVAKAQEDKEDAKTESDADEMEMSLDEALKQQQQPSDLSMPMSNNKRRSLACNQCGKQVYKLPYLEAHIRSVHEGHSKPFLCVHCKKSFTRYEQLRSHVRNVHPNSSSKQQDHQSLDEEQEQVQRLICLHCKRKYSTKNALGEHLKRHAQHKEHICEHCGVAKVTRTELLTHLRIHNPSWEKFKCQQCPQLFRHKSAISRHVRVVHEGQRRFQCAHCEKRFGTHASQLRHERLHTGQLPHRCEICTKCFPDGDRLTAHIRTHDRNLWPFSCMHCDKPCVTLQNLERHLQRHSSKNPPHICANCNRSFSTDEMLANHKEEACSINEKTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00571366;
- 90% Identity
- iTF_00571366;
- 80% Identity
- -