Dvul027022.1
Basic Information
- Insect
- Drosophila vulcana
- Gene Symbol
- -
- Assembly
- GCA_008042555.1
- Location
- VNJP01007397.1:159879-162957[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7.6e-07 0.0001 23.1 3.1 1 23 205 228 205 228 0.95 2 13 2.9e-05 0.0039 18.1 0.1 1 23 235 257 235 257 0.97 3 13 0.085 12 7.2 0.8 2 23 291 312 290 312 0.95 4 13 0.00039 0.053 14.6 3.0 1 23 404 427 404 427 0.97 5 13 0.18 25 6.2 0.4 1 19 434 452 434 455 0.94 6 13 0.047 6.4 8.0 6.4 1 23 464 486 464 486 0.95 7 13 4.8e-06 0.00066 20.6 0.4 1 23 493 516 493 516 0.97 8 13 0.00027 0.037 15.1 2.4 2 23 524 545 523 545 0.96 9 13 0.018 2.5 9.3 0.2 2 21 572 591 571 592 0.94 10 13 0.0056 0.76 10.9 2.6 1 23 641 664 641 664 0.98 11 13 0.0037 0.5 11.5 0.7 1 23 701 724 701 724 0.97 12 13 0.00022 0.03 15.4 1.2 2 23 757 779 756 779 0.95 13 13 1.8e-05 0.0024 18.8 0.5 1 22 782 803 782 806 0.90
Sequence Information
- Coding Sequence
- ATGAAGCTGCCGGTAATGTGTCGCACCTGCGACTCCACGGACACCGACAATCTTCTGAAGCTGGCCACGCCCTCGAAAAAGTATCCGGACAAGCTGCTCTCGGAGATTTTGACTGAGCTAACCGATATCCATGTGGACGCGAGTGGCAATCAGAAGCTGCCGCAGTGCTtgtgcagcagctgcaccaAAAAACTAATGATTGCATATTGCTTTGTGAAACAGGCGCTGGTCGCCAACGCATTGCTGATGAAGCACTTTAAGAATGGCTCTGCACCGACCGCCAACGATTGCCTGCAGGAGGCGCCCATGGAGCTGTGCGCCGAGCAGCATGTGGGGGTCAAGATGGAGACGGAGGACGAGGAGTGTGGCGACAATGATGTTAGTATCACCTGCTCCGATCTGCCAGAACCGGGCGAACGGGATGTGGAGAGCAAGAAGTCTGTGGATCCACTGACAATGATTGAGACGGTGAAACTGGAGGGGGAACCGCCAAGCTTGGAAAAGACGGTTGAAGAAGAGCCTACCTTGGATTTTGATGATGAAGAAGACTCCCTGGATAACCTGCCCCTGAATAAGCGCATTCAAAAGTGGAAGGCTGGAAGAATGCCCGTTTTCAAGTGCCACGATTGCCCAAGGAGTTTCAAGAGAAACGAGTACCTAAAGCGCCACGAAATCCGTGTCCATCAGCCGGAAACCCAATGGTTTGCCTGTTCCCTCTGCGCTCGCAAGTTCAGTCGCAGCGAAGCTCTCGAGGCTCACCTGAAGGTGCACAGAAACTCCAAGCGATCGGCCGATCGGAATATCAGCGAGCACAAGAAGGCCAAGGCAGTGGATTTGAATCTCTGCAAGCCGCACGGCTACAAGCTCATCAAGTGCATGATCTGTCAGAGCCATTACAACAAGATTGCGGATCTGCGAAGGCATTTGGAAGAGCATCCGGATATTGTCAGTTTGGGCGTTCGTCCAAATGGGGAGCCCAATGAGCTGGCGGAACTGTTTTATCCCGACTCCAAGGAAATGGATGAAGAGCAGTTGATCTGTCTTATCCGCAAGGATCTGGCGTCGGGCATCTATCAACGTTTCTACTCGATAACCAATCAGAGTGGTTACGAAATGGATCTGGACAGCTCGGAGACGGACAGCGATATGGACGCTGGTGACCCAGAGGATCAGCAAAACAAGAGGCGACGCAAGAATCGTAGGTGTAGCTACACCTGCGAATTGTGCCAGCAGAAGTTTACGcggaaatatcaaatatatgaTCATCAAAGGCAGAGCCACAGTTGGTCTGAGGCTCCGCATGTCTGCGGTAGGTGTGATGGACGCTTTGTAAGTCTGCAAATGCTGCAGCATCACAACGAGTCGCAGTGCCGGAATGCACAGAAGCGTTTCCTTTGCCACAAATGTCCGCTGCGCTTTCGGTGGAAACATAATTTGAAGACCCATTTCCGCGAGCATAGGATTACAAACCAAACCTTCGAGTGTCCTGAGTGCAAGCGGGTTTTTGATAAAAAGAAATCTCTCACCGTTCACCTGCTCAGCGTCCATGCGGAGGAATCAAAGCTTATACCCTGCCAATGGTGCAGTCGCAAGTTTTACCGGCATGACTACCTGGTGAAGCATCTAAAGCGTCATGGCCTCAAGGAGCAGGACATTCCACTGGCCGAGACTTTGATAGCGGCCACTTCGCGACCAAATGGAACGAAGAGAATCACCTGTCGGATGTGCAATCTACACTTTGAGCGGATTATGGATCTGCGCGCTCACATCCAGCTGGAACTGAAGCTGTCATTGTCGCTCCATCAGAGCTACGATTCGCCGCATAATTATTCCATTACTAACGAGTCCGGTTttgagctgcagctggaggatTCGGAGACGGAGGATGAGATGCAATCAAGCAGCGGCGGTCGTCATGTTTACATCTGTGAGCTGTGCAGTGTGCAGTGCAAACGGAAATTCGAAATGATTCAGCATCAAAGGACAATGCATCGTTTTGATAAAATGCCGCATGAATGCGACGACTGCATCTTCAAGTGTGTGTCCAAGagCATAATGGATCACCATCGGCTGGGGCAGTGCAGCAGCAAGGAGAAGATGTACACCTGCAGCAAGTGCTCCTACAAGTTCATGTGGCCGGAGAACCTAGAGCAGCATGTGCGTCTCCAGCACAGCGAATCCACTTCCATCAGCAATCCCACAGGCGAAGCCAGCAGTGGACCTGGAGACCTCGATAAGGACGCCGGCGAAGATGGTGTACCATTGTTGCAGTGCCCGCATTGCGATCGCACTTATCAGATAAAATCCCGCCTGAATAACCACATCCGGGATGTTCATTGTCCGTTCGTGTGCGGCACCTGCGGCGAACGATTTATACAGAGCAGCACACTGGAGAAGCACCGCCTGATGCGGCGTCACTTTGATGAAGTAGAAGCTTGGCTAAGAcgtcaaaaataa
- Protein Sequence
- MKLPVMCRTCDSTDTDNLLKLATPSKKYPDKLLSEILTELTDIHVDASGNQKLPQCLCSSCTKKLMIAYCFVKQALVANALLMKHFKNGSAPTANDCLQEAPMELCAEQHVGVKMETEDEECGDNDVSITCSDLPEPGERDVESKKSVDPLTMIETVKLEGEPPSLEKTVEEEPTLDFDDEEDSLDNLPLNKRIQKWKAGRMPVFKCHDCPRSFKRNEYLKRHEIRVHQPETQWFACSLCARKFSRSEALEAHLKVHRNSKRSADRNISEHKKAKAVDLNLCKPHGYKLIKCMICQSHYNKIADLRRHLEEHPDIVSLGVRPNGEPNELAELFYPDSKEMDEEQLICLIRKDLASGIYQRFYSITNQSGYEMDLDSSETDSDMDAGDPEDQQNKRRRKNRRCSYTCELCQQKFTRKYQIYDHQRQSHSWSEAPHVCGRCDGRFVSLQMLQHHNESQCRNAQKRFLCHKCPLRFRWKHNLKTHFREHRITNQTFECPECKRVFDKKKSLTVHLLSVHAEESKLIPCQWCSRKFYRHDYLVKHLKRHGLKEQDIPLAETLIAATSRPNGTKRITCRMCNLHFERIMDLRAHIQLELKLSLSLHQSYDSPHNYSITNESGFELQLEDSETEDEMQSSSGGRHVYICELCSVQCKRKFEMIQHQRTMHRFDKMPHECDDCIFKCVSKSIMDHHRLGQCSSKEKMYTCSKCSYKFMWPENLEQHVRLQHSESTSISNPTGEASSGPGDLDKDAGEDGVPLLQCPHCDRTYQIKSRLNNHIRDVHCPFVCGTCGERFIQSSTLEKHRLMRRHFDEVEAWLRRQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -