Dvar000044.1
Basic Information
- Insect
- Drosophila varians
- Gene Symbol
- grn
- Assembly
- GCA_018150405.1
- Location
- JAECWK010000129.1:2441948-2470891[+]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.051 1.3e+02 2.1 0.1 8 19 9 20 7 22 0.84 2 3 2.2e-19 5.5e-16 57.6 4.7 1 35 396 429 396 430 0.98 3 3 7.6e-19 1.9e-15 55.9 6.3 1 35 456 489 456 490 0.97
Sequence Information
- Coding Sequence
- ATGACTAATGATAAGCTGGCATGCAACACGGATCGGTGGCGCGGTGGCGGCAGCGGCAGCGTCAGCGGCAGCGGCAGCGGCACCGCATCCCGCATGCCCTCCACCCATGCCACGCCCCAGGTGTGCCGGCCGCACTTCCACACCCCGCTGAGTCCCTGGCTGACCAGCGAGCACAAGTCCTTCCCACCCGCCAGCGCCTGGAGTATGGGCCAGTTCGCCTGCCCGCAGGAGCCGCAGGTGGAGCACAAGCTGGGCCAGATGGGCCAGGGCCACCAGACGACGGCGGCCGGACAGCACTCGTTCCCCTTTCCGCCGACGCCGCCCAAGGACTCCACGCCGGATTCCGTTCAAACTGGTCCATCCGAATACCAGGCCGTGATGAACGCCTTCATGCACCAGCAGGCCACGGGCTCTACCTCACTGACGGACGCCAGTTGTGCGCTGGACATCAAGCCCTCGATCCAGAACGGCAGCGCGAGTGGCTCCTCCGGCAGCGGACCCGCCCAGTCGTCGGCGCCGAAGCAACGCGAAGGTACTAGCTCTAATCCCAGCTCCAGCTCAAACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTCCTCCGCCGCAGCAGCGTCTCTGTCCGCGTCCGCATCTGCCGCCTCCGCTTCGGCGCACACCTCCTCCAATGGGCTGTTTGACGGCACGGCGCAGGCCCATTACGCCTCAAACAATGGAAGTGGGGGAAGTGGTGGCGGCGGTGGCGGTGGCTCCGGTGGCTACGACAGCTCCAGCTACGCGTCGTACCACCACGCGGCGGCGCACCATCAGGCGGCGGCGGTGGCGGCGGCCAATATGTTCCAAAGCTCGGTGCGCCACAGCATGGCCGCCGCCCAGGCGCACCACCACCACCACCACCATAGTGGCCACCACCACAGTGGCTCTTCCTCGGCCGCGATGCACGGCCTGGGCGGCTCGGTGGGCGGTGGGTCGGGCATGGGTGGCATGAGTGGCGGCAGCGGAGGGGCGGGCGGTGGCGCTGGCTCTCTCGGCGGCCACAGTGGCGCGAGTAGCAACAACACCAGCGGAAGCGGCAGTGGCCTGGACATCAAGCCCGTGAGGACGAAGCCCCGGACGAGTGCTGAAGGACGCGAGTGCGTAAACTGTGGCGCCACCTCGACGCCCCTGTGGCGACGCGACGGAACGGGACACTATCTGTGCAACGCCTGTGGCCTGTACTACAAAATGAATGGCCAAAACCGACCCCTGATCAAGCCAAAGCGAAGACTGACCCTGCAATCGCTCCAGAGTGCGGCCAAGCGGGCGGGCACTTCCTGCGCCAACTGCAAGACCACAACCACTACCCTTTGGCGGCGCAACGCCAGCGGCGAGCCCGTCTGCAACGCCTGCGGATTGTACTACAAGCTGCACAATGTCAATCGTCCTTTAACGATGAAAAAGGAGGGCATCCAGACCCGCAACCGCAAGCTCAGCTCAAAGTCCAAGAAAAAGAAGGGCCTGGGCGGCGGCTGTCTGCCGATTGGAGGACATCTCGGTATGGGCGACTTCAAGCCGCTGGATCCCTCGAAAGGCTTTGGCGGCGGCTTCTCGGCCTCCATGGCGCAACATGGACACCTCTCGAGCGGACTGCATCCGGCACATGCGCACATGCACGGCAGCTGGTACACCGGCGGCATGGGCGCCCTGGGCGCCTCCAGTGGCCTGCAGGGCGGCTTCTCCACCGCCGGCTCTCTCGGCGGCGCGGTGGTCCCCCATTCGCAGCCCTACCACTTGGGACTCAGCTCGATGCCACAACCTGAGGTCTCGACCACGTCTTCAAGTTTTCTGCTCCTCGGCCGGGAGTGGGAGACGCCCGGCTCCGGTTCTAGAGGCTCTGGAGGCTGTGGAGAGGTTAACTGGTCTTCGGCTAGTGAGGTGGTGAGGTGGCCAGGTGGAGGGGGAGGCATCTGCACCAGCAGCAACATCTGCAGCAGCTCCAGCATCTCCAAAGGCAACACCAGCCACCACCACGCCGACCGCGTGATGCGGTTGATATCGGCTTATCACGTTCACGGGAGACTGCAAGACGCTCCGCAAGTTTATACGAGTCTGCGAGATTGCGAACTCTAG
- Protein Sequence
- MTNDKLACNTDRWRGGGSGSVSGSGSGTASRMPSTHATPQVCRPHFHTPLSPWLTSEHKSFPPASAWSMGQFACPQEPQVEHKLGQMGQGHQTTAAGQHSFPFPPTPPKDSTPDSVQTGPSEYQAVMNAFMHQQATGSTSLTDASCALDIKPSIQNGSASGSSGSGPAQSSAPKQREGTSSNPSSSSNSXXXXXXXXXXXXXXXXXXXXXXXXXXASSAAAASLSASASAASASAHTSSNGLFDGTAQAHYASNNGSGGSGGGGGGGSGGYDSSSYASYHHAAAHHQAAAVAAANMFQSSVRHSMAAAQAHHHHHHHSGHHHSGSSSAAMHGLGGSVGGGSGMGGMSGGSGGAGGGAGSLGGHSGASSNNTSGSGSGLDIKPVRTKPRTSAEGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLTLQSLQSAAKRAGTSCANCKTTTTTLWRRNASGEPVCNACGLYYKLHNVNRPLTMKKEGIQTRNRKLSSKSKKKKGLGGGCLPIGGHLGMGDFKPLDPSKGFGGGFSASMAQHGHLSSGLHPAHAHMHGSWYTGGMGALGASSGLQGGFSTAGSLGGAVVPHSQPYHLGLSSMPQPEVSTTSSSFLLLGREWETPGSGSRGSGGCGEVNWSSASEVVRWPGGGGGICTSSNICSSSSISKGNTSHHHADRVMRLISAYHVHGRLQDAPQVYTSLRDCEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00505769;
- 90% Identity
- iTF_00481889; iTF_00550603; iTF_00615249; iTF_00488374; iTF_00539318; iTF_00504348; iTF_00546313; iTF_00566449; iTF_00476284; iTF_00477685;
- 80% Identity
- -