Dvar000394.1
Basic Information
- Insect
- Drosophila varians
- Gene Symbol
- -
- Assembly
- GCA_018150405.1
- Location
- JAECWK010000129.1:4501885-4505487[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0013 0.12 12.6 1.9 1 23 193 216 193 216 0.97 2 12 0.00019 0.018 15.3 4.3 1 23 221 244 221 244 0.94 3 12 5.9e-06 0.00056 20.0 1.2 1 23 249 271 249 271 0.98 4 12 2.3 2.2e+02 2.4 3.8 2 23 278 301 277 301 0.91 5 12 0.00035 0.033 14.4 4.6 3 23 312 333 311 333 0.95 6 12 0.0024 0.22 11.8 0.2 1 23 339 362 339 362 0.96 7 12 0.0062 0.58 10.5 0.4 2 23 373 395 372 395 0.93 8 12 0.00063 0.059 13.6 0.5 1 23 423 445 423 445 0.96 9 12 2.3e-05 0.0022 18.1 2.2 1 23 452 474 452 474 0.96 10 12 1.4e-05 0.0013 18.8 0.3 2 23 481 502 481 502 0.97 11 12 0.00013 0.013 15.8 1.4 1 23 509 531 509 531 0.99 12 12 0.00019 0.018 15.3 4.5 1 23 537 560 537 560 0.98
Sequence Information
- Coding Sequence
- ATGGAAACGTGTCGCACCTGTGCGATTTCCATGTTTGTTTGCGACTCCGAAAATGGCAGCAACAATTTCCTGGATCTCTACCATCCCAACTGCTGGCCCAGCGAGATGGCCCAGATACGACTGCAGTTCGTTAACTGGAATCTTGAGATCTCTCCGAACGATGGCTTGCCCCAGAAGATTTGCAGTGACTGCTTTGCCAAATTTTGCTCCATAAACGCCTTTCGAGTGGTCTGCCAGGAGGCGCAGTTAAAGCTTTCGAATATTTACGACAAGATCGATGCCAATAGCCTGGAAGACGATGATCAGGGAGATGCTTCTCCAGACCAAATGCAGGATGTTGAGGGATTGGAAGGAACAACGACGGTTTCAACCGAAACACCACCAAACACTGCCATTGAACCCATAGATATTTTCGTGGACGAGGATCAGGAGCTGCAGCCAGACCTCGAGAAGTCCACTAGCCCTCAGCTGACCATTAGTTACACCTGCAAGTTCTGCCTGCAACCCCAGGAGAGCTACCAGCTGCAGCAGCTGCTGCTGGAGCATATCAACTGCAGCCACGATCCGGAGCAGCCGTACAATTGTCCGGAGTGCGATGCGTGCTTCCAAGATGCGGCATCGCGAACCGTGCATCTCAAGAGCTGCCACGTGGAGAAGCAGCACGCCTGCGAGGTGTGTGGCAAGAAGTACGGCGATCGTCACAACCTCCGCCACCACGTCGAGAAGTACCACACGGACACGGACTTTGAGTGCGGGCTCTGCGAGAAGCGCTTCGTGACCCGCAAGAGTCTCAACTACCACATGAAGTGGCACAACCCGGAACGCCAGCTCAAATGTCGCCAAAGTGGCTGCGAGAGGCTGTTTATCAATCAGCGTCATCTGAAATGCCACGAAGCCACTCACCTGGGAGCCAGCTCCCGGAAGAGTGAGCATTGCAGCTTCTGTGGGAAAACCTTTATACACCTGAAGACCCTTCGCTGGCACATTTACAGACAGCACGGAGGCGAGAAGCCCTACAAATGCGCCAACTGCACCGAGGTTTTTGCATCGTATGCCGAGAAGCGCATCCATATGCTGGAAAGGCACAGGGAGAACCTGACCGCCATTGAACGGAGCGAGTGCATGATGTGCAGGCAGCATTTTGCCACCGAGCAGGACCTGGCTAGTCATATGTCGGCGGCGCACCTGCATCGACCTGGAATGCCGGTGATCGCCAACAACAAGCGCGTTCTGCAGCAGAAAAGGGAACGCCAGTACTCCGGACTCTTTCAATGCGCCAGTTGCACGCAAAGATTTAACATGAAGTCGGCACTGGAGCGGCACTCCGCCGTACATTCGGAGAAGGACCGCCCGCACGCCTGCCCCCAGTGCTCCAAGCGGTTCAAGCGCGTCCAGGACATGAAGTGGCACATCAAAACCCACGAAAAGGAGAAGCCCAACGTGTGCGATGTGTGTGGGAAATCCTTTGCCCTGAAGTACGTGTTGAACCAGCATCGACGCAGCCACGAAGTCTTGGAAAAAAACTTTAAATGCACCATTTGCGGAAGATCCTATTTGTTTGAAAAGTCCTTGCGGCTCCATCAAAGGGTCCACACCGGCAAAACCTACTACAAGTGCGATTTCTGCCAGGAACGCTTTGTCACGCACATCAAGCTTAAAACTCATATGCAAAAGACGCACTCCTCTCAGTCGCCCTCTGAGGACACTTTGGATGATCTGATAAACATTGTGATTTCCTAA
- Protein Sequence
- METCRTCAISMFVCDSENGSNNFLDLYHPNCWPSEMAQIRLQFVNWNLEISPNDGLPQKICSDCFAKFCSINAFRVVCQEAQLKLSNIYDKIDANSLEDDDQGDASPDQMQDVEGLEGTTTVSTETPPNTAIEPIDIFVDEDQELQPDLEKSTSPQLTISYTCKFCLQPQESYQLQQLLLEHINCSHDPEQPYNCPECDACFQDAASRTVHLKSCHVEKQHACEVCGKKYGDRHNLRHHVEKYHTDTDFECGLCEKRFVTRKSLNYHMKWHNPERQLKCRQSGCERLFINQRHLKCHEATHLGASSRKSEHCSFCGKTFIHLKTLRWHIYRQHGGEKPYKCANCTEVFASYAEKRIHMLERHRENLTAIERSECMMCRQHFATEQDLASHMSAAHLHRPGMPVIANNKRVLQQKRERQYSGLFQCASCTQRFNMKSALERHSAVHSEKDRPHACPQCSKRFKRVQDMKWHIKTHEKEKPNVCDVCGKSFALKYVLNQHRRSHEVLEKNFKCTICGRSYLFEKSLRLHQRVHTGKTYYKCDFCQERFVTHIKLKTHMQKTHSSQSPSEDTLDDLINIVIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00491676;
- 90% Identity
- iTF_00615078;
- 80% Identity
- -