Basic Information

Insect: Drosophila vallismaia
Gene Symbol: RREB1
Assembly: GCA_035047325.1
Location: JAWNPU010000025.1:7273758-7279985[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0052 0.45 11.2 0.6 1 21 262 282 262 284 0.96

2 13 0.0003 0.026 15.1 0.2 1 23 294 316 294 316 0.98

3 13 7.2e-05 0.0063 17.1 7.3 1 23 322 344 322 344 0.98

4 13 1.9 1.6e+02 3.2 3.7 2 19 583 600 583 602 0.97

5 13 0.015 1.3 9.8 0.1 1 23 746 768 746 768 0.97

6 13 1.1e-05 0.00096 19.7 0.7 1 23 778 800 778 800 0.99

7 13 0.00074 0.064 13.9 2.0 1 23 806 829 806 829 0.97

8 13 0.0027 0.23 12.2 2.0 1 23 1106 1129 1106 1129 0.95

9 13 7.7e-05 0.0067 17.0 0.3 2 23 1494 1515 1493 1515 0.97

10 13 0.13 11 6.8 6.3 1 23 1521 1544 1521 1544 0.97

11 13 1.5 1.3e+02 3.5 2.1 1 23 1666 1689 1666 1689 0.91

12 13 0.0075 0.65 10.7 0.5 3 23 1758 1778 1756 1778 0.96

13 13 0.0012 0.11 13.2 4.8 1 23 1784 1806 1784 1806 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0052	0.45	11.2	0.6	1	21	262	282	262	284	0.96
2	13	0.0003	0.026	15.1	0.2	1	23	294	316	294	316	0.98
3	13	7.2e-05	0.0063	17.1	7.3	1	23	322	344	322	344	0.98
4	13	1.9	1.6e+02	3.2	3.7	2	19	583	600	583	602	0.97
5	13	0.015	1.3	9.8	0.1	1	23	746	768	746	768	0.97
6	13	1.1e-05	0.00096	19.7	0.7	1	23	778	800	778	800	0.99
7	13	0.00074	0.064	13.9	2.0	1	23	806	829	806	829	0.97
8	13	0.0027	0.23	12.2	2.0	1	23	1106	1129	1106	1129	0.95
9	13	7.7e-05	0.0067	17.0	0.3	2	23	1494	1515	1493	1515	0.97
10	13	0.13	11	6.8	6.3	1	23	1521	1544	1521	1544	0.97
11	13	1.5	1.3e+02	3.5	2.1	1	23	1666	1689	1666	1689	0.91
12	13	0.0075	0.65	10.7	0.5	3	23	1758	1778	1756	1778	0.96
13	13	0.0012	0.11	13.2	4.8	1	23	1784	1806	1784	1806	0.99

Sequence Information

Coding Sequence: ATGCTGGcagcacagcagcagcacaacACCGGCAGCACCGCCGCCAACACCACAAATAGCACCGAGAACGAGATGGAGCGTCCGAGGCGGGACTCCACCACCTCGGAGTCCTCGCTGGAGCACCTGGATTTGGGGCGCACGCCCAAAAAGCTTAGCGCCGGCGgcggcaacggcagcggcGTTGGTAGTCTGCTGCAGCCGACGTCGACGCCCCACGAAGTCATGACGGCGCCGTCGCGGAAACGCACGCTGCGCCAGCTGCACCATCACCACCAGGACCTGCTCagcgacgaggacgaggaggaggatgaggcGTCAGTCGCTGGGCCACGCCCTCACGGCCGCCAGAAGCAGCGGCGCAACGCCTCTGCCTCGGCCTCGGCCACCGCCAGCATCGTGGTGGATTACAGCGGCAGCGACGCCAGTTCGCTGCGCAAGAAGTTCCGTTTAAATCGGTCGGCGGCGTCAGCGGCGGCTGCTGCCTCCAGTCTGTCGGAGTCGGGATTCGTGGACACCACCGCCCACAGCGGCTATTTgggcaacaacagcagctcGATGGCATCCACGGCGACGTCGTCGGTGAACAACGCCAGCAGCGCTGGTGCAGCGACGCCGTCAGCAGGCGCCGGCGCCGGCGCTGGCatcggcagcagcagccggaatagcagcagcggcagcagcagcgccggATCCGGGTCCGGCTCTGGGGGATCATCGCCACAGGGTGGCCTGTGCCTCTCCAGCGGCGAGTCCGGGATCGGGGCGGGGGACGAGCACATGAAGTACGTGTGCCCCATCTGCGAGGTGGTCAGTGCCACGCCCCACGAGTTCACCAACCACATTCGGTGCCACAACTACGCCAACGGTGATACCGAGAACTTCACCTGCCGCATCTGCTCCAAGGTGCTGTCGTCCGCCTCATCCCTGGACAGGCACGTGCTGGTGCACACGGGGGAGCGCCCCTTCAACTGCCGCTACTGCCACCTGACCTTCACCACCAACGGGAACATGCATCGCCACATGCGCACCCACAAGCAGCACCAGGCCaaccagtcccagtcccaatcCCAAACCCAGACCCAAACTCaatcccagcagcagcagcagcagagacGCCAGCAGCATCAGGCCCATCCTGtccagcagctccagcagccACAGCATCCTGTCCAGCATattcagcagcagcagcagcagagcctCAATCTCGCCCAGCAGTCGATGGGTGGACGGGCGGAGAGCTACGAGAGCGACGCCAGCTGCTCCACAGACGCCTCCAGTGGCCACAGTCGCAGTCGGAGCAGCAGCTCCCTGgcccacaacaacaacaacaactcccAGAAGGCCAACCACAACCACAAGGACGTGGACCTGGACCTCgagctggaggaggaggtgaagcaccaccagcagcatcgCCGCGGCCTCAAGACCACCATCAATAATAATGTCATAGAGAGCAGCGGACAGggtgaggaggaggaggaggatgaggaggaaCAGGACGATCGGGAGCACGAGGATGTGGACGAGGAGGCGGACGTGGCCATGCTGACATCCACCCCGGATGTGGCCACCCTGCTGGCCGGAGCCAGTGCCTCGGGTGCCGCCTCGCGTTCCGTTTCCCCCTCATCGGCCGCCTCGCCGGCTCTCCTGCTCAGCTGTCCCGCCTGCGGAGCCTCCGATTTCGAGACTCTGCCATCGTTGTGCGACCACCTGGACGCCATTCACTCAGACATCCCGGCCAAGTGCAGGGATTGCGAGGTGATCTTCGCCAGCCACCGCCAGCTGCAGGCCCACTGCTGTCGGGGAGTCGGAGGACGCTCTGTGGGAGGTCTGCCACCGCTCCTGGGAGCCAGCAGCTCGCCCCTTCACGGCGACGACGATatcgaggacgaggacgaagaGGATGCGGAGCGACGCCGCCTGGAGAAGCAGCGCCTGGCTGACCAGCGGGAGGACTTCTTCCAGCAGCTCTACCTCAAGGGCAAGACCTCCGGCGAGCATCCGCCGTCGCCGATCAAGCACGAGCCGGCGGACAGCAAGGACCTGGCCGATATCCAGAGCATCCTGAACATGACCAGCTCCAGCTGCACCAGCAGCTTCCTGCGCAACTTCGAGCAGTCGGTGAACACGCCCAGCTCCAGCCAGTACAGCCTGGATGGCCGCgaccaggaggaggaggcgcaGGATGCCTTCACCTCGGAGTTCCGCCGCATGAAGTTGCGTGGCGAGTTCCCCTGCAAGCTCTGCACCGCCGTATTCCCCAATCTGCGCGCCCTCAAGGGCCACAATCGCCTCCATCTGGGTGCAGTGGGTCCGGCCGGACCCTTCCGCTGCAACATGTGTCCCTATGCCGTCTGCGACAAGGCCGCCCTGGTGCGGCACATGCGCACCCACAACGGCGATCGTCCATACGAGTGCGCCGTCTGCAACTACGCCTTCACCACCAAGGCCAACTGCGAGCGGCATCTGAGGAACCGCCATGGCAAGACCAGCCGGGAGGATGTCAAGCGCGCCATCATCTACCATCCGGCGGAGGATGCCGGGTGCGGCGAGGACGGCAAGTCCCGCCTGGGTGAGGATCTGGACTTGAGTTTCCGTTCCATTAGTCCCactccgccaccgccgccgccgctccAGGAGAGCAGCTCCCAGCTGAAGCACATGCTTCTGGCTGAGAATCAGCCGGTTGTCGTCCCTGGagccggagtcggagtcggagcaGCAGCTGCCCCGCCACAGCCGCCGTTGAAGATTCAGGTCAAGAGTCTGGACCAGTTGGTGGACAAGAAGCCCAGCCAGGAGAAGAGCTCGCCCAGTGCCGCCCTGGACTTCAGCATGGACGTGCTGGATCTCAGCAAGAAGCCCTCCAGCGGATCGGCAGCCGTCACCCCCACTCCCACACCAGCTCCGGCTCCGTTGGCGCCACCGCCTGGAGTGCCCGGAGTGCCTGGGGCACCGGACTTGGCCGCCGCCTTGGAGCAGCACCAACTGCTCCTGGCCCAACAGCAGCTCTTTGCCGGAGCCGCCGGCGATGCCGCCTCCCAGTATGTCCAGCAACTGTTCCGCAGCCTGATGTTTCAGTCCCAGACTCCGGGCTTTCCCTACTTCTCGTTCATGGGGCCTCCCCCGCCCCAGGCCAATCCGGAGAAGCCGCCGCCGTTGGTCAGTCCGCCCACTCGTGGCCTGAACCCCCTGCCGTTGGGCGGTGTGGGAGTCCCAGTCCCTCCGGGTGGACCCGTCAAGATGGTCATCAAGAACGGAGTCCTCATGCCCAAGCAGAAGCAGCGTCGCTACCGCACCGAGCGTCCCTTTGCCTGCGAGCACTGCTCCGCCCGCTTCACCCTCCGCTCCAACATGGAGCGCCATGTCAAGCAGCAACATCCTCAGTTCTATGCCCAGCGCCAGAGGAGTGGGCACCACGTGATGCGCGGACGTGGCGCCTCCaatgctgctgccgctgcagctgccgccgccgccgctgccggcATGGGTATTCCCGGAACAGGATCCGCTTCCGGAGCCGGCTCTGGAGCCCATCACCATCCCGGCCATGGACATGGTCACGGGCATGCTCCCATCTCGGAGCAGGTCAAGTACGCCATTCTTGCCCAGCAGCTGAAGGCCCACAAGAACACGGATCTGCTGCAGCAGGCCCTGGCCCACGGCTCGAGCAGCGTGGCCGGTAATCCCCTCCTGCACTTCGGCTATCCCCTGGCCACACCGCCGCCCAACTCCTCGCTGCACAACGGCGCCGGAGGTCAGGCGGGAAACGGCCTGCCCCTGGTCGCCATGGACGATGACGAACCCAAGCTGATCATCGATGAGGACGAGAACGATAACGACAACGATgtggaggaggtggaggacgacgaggaggaggaagaggaggaggaggaggacgagccTGAGGACGAACCCGAAATCATTGCCGACGACGAGCCACTCCCcagggaggaggaggaagaggaggagaaGCCACAGCTCGACAAGATGGAGGAACTGGAGCTGCCCAAGCCTCTGGAGGCGGCCCAGAAGACCGCCGAGACCATCTTGGAGCAGGCCATCAAGGCGGGCAAGCCAGTAACCACGCCCCCACCTCCCCCGAAAGAGCAACAACCAGACCAGAAGATTGCCCCGCCGGCGCCAAGTACCCTGAAGACGATGATCGCCCAGGCCGAGTCCGTGGGCAAGTCCCTGAAAGAAGTGGCCAGCTCGCCGTTCAAGGACGAGTCCCAGGACCTAGTGCCGGTGGCCAAGCTGGTGGACAACGCCACCAGCCAGAACATGAGCTTCAATAGCTATTTCCGTCCCAGCGACGTGGCCAATCACATGGAGCAGAGCGACGAGGAGGGTCTGGTGGCCTCCGGCAGCGCCAGCGAGAGCAACAACAGCGGCACCGAGGACGTGACCAGCAGCTCCTCCGGCAGCGAGCCCAAAAAGAAGTCCGCCTACAGTCTCGCCCCCAATCGGGTGTCCTGCCCCTATTGCCAGCGCATGTtcccctggagcagctccctGCGCCGCCACATCCTCACCCACACCGGCCAGAAGCCCTTCAAGTGCTCCCACTGCCCCCTGCTCTTCACCACCAAGAGCAACTGTGATCGCCATCTGCTGCGCAAGCACGGCAACGTCGAGTCCGCCATGTCCGTCTACGTGCCCACCGAGGACGTCAGCGAGCCGATCCCCGTCCCCAAGTCCGTGGAGGAGATCGAGCTGGAGGAGCGCCGTCGCCAGGAGGCAGAACGCGAGCGCGAACGCGAACTGGAGCGAGCCCGGGAACGGGAGCTGGAGCGGGAACGCGAACTGGAGATGGAGCGCGAGCGGGAGCTGGccgagaaggagaaggagcgcGAACGCCAGCAGCTCATCCAAAAGTTGGCTGCCCAAATGGCGGCCGCCGCCGCTGTGGCAGCCTCAGCTCCTGGAGCGGCCGGTGTCTGCCCGGTTTCCGGGGGATTGGACGCCCAAGCTGGCGGAGATCTGCCCTACAAGTGCCACCTGTGCGAGGGTTCCTTCGCCGATCGCCTGCAGTGCCTGGAGCACATCAAGCAGGCCCATGCCCATGAGTTCGCCCTGCTCCTGGCCAAGGGAGCCATCGAGAACGAATCGGTCCTGGGTGAGTCTGCCTCAGGGAATCCTCAGGGAGTCCAGCAGCCACCGCCtagccagcagcagcactcCGACGACGAAGCCACCAATGGCCTTGTAGGCGGCGCTGGTGGACGTGGCAAGTATCCGGACTACAGCAACCGCAAGGTGATCTGCGCCTTCTGCGTCCGCCGCTTCTGGTCCACCGAGGACCTGCGCCGCCACATGCGCACCCACTCCGGGGAGCGTCCCTTCCAGTGCGACATCTGCCTCCGGAAGTTCACCCTCAAGCACAGCATGCTCCGCCACATGAAGAAGCACAGCGGACGGGCCCACAACGGCGACGGACCCGGCTCCGACTGCTCCGATGACGAGCAGGTGAGCAGCAGCCCACCCGGCACCCCGGCCCCGCCCAtggccaccgccaccaccacagCGGCCTCCACCGCTGccaccaccaacaacaacaacagctgccacacgaacaacaacaacgtgAGTGCCAAGCTGGGCCTGAAGCTTCCCAAGCTGCACGAGCTGCTGGACAAGGCGACGGAGTGGCGGGCCAGCCGGCTGGCCGGGGAGCACAAGGAGAACCTGGGCGAGGCCACCACCCCGACCTCAGGCTCCGGGACGGATCTGATCGGTAACCTCCTGGGCATCAGCGACCAGGGAATCCTCAACAAGCTGCTCTCCTCCGCCGACGAGGCGGCCAAGCTCCTCGGCGTGGACAACAAATAA
Protein Sequence: MLAAQQQHNTGSTAANTTNSTENEMERPRRDSTTSESSLEHLDLGRTPKKLSAGGGNGSGVGSLLQPTSTPHEVMTAPSRKRTLRQLHHHHQDLLSDEDEEEDEASVAGPRPHGRQKQRRNASASASATASIVVDYSGSDASSLRKKFRLNRSAASAAAAASSLSESGFVDTTAHSGYLGNNSSSMASTATSSVNNASSAGAATPSAGAGAGAGIGSSSRNSSSGSSSAGSGSGSGGSSPQGGLCLSSGESGIGAGDEHMKYVCPICEVVSATPHEFTNHIRCHNYANGDTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCRYCHLTFTTNGNMHRHMRTHKQHQANQSQSQSQTQTQTQSQQQQQQRRQQHQAHPVQQLQQPQHPVQHIQQQQQQSLNLAQQSMGGRAESYESDASCSTDASSGHSRSRSSSSLAHNNNNNSQKANHNHKDVDLDLELEEEVKHHQQHRRGLKTTINNNVIESSGQGEEEEEDEEEQDDREHEDVDEEADVAMLTSTPDVATLLAGASASGAASRSVSPSSAASPALLLSCPACGASDFETLPSLCDHLDAIHSDIPAKCRDCEVIFASHRQLQAHCCRGVGGRSVGGLPPLLGASSSPLHGDDDIEDEDEEDAERRRLEKQRLADQREDFFQQLYLKGKTSGEHPPSPIKHEPADSKDLADIQSILNMTSSSCTSSFLRNFEQSVNTPSSSQYSLDGRDQEEEAQDAFTSEFRRMKLRGEFPCKLCTAVFPNLRALKGHNRLHLGAVGPAGPFRCNMCPYAVCDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHGKTSREDVKRAIIYHPAEDAGCGEDGKSRLGEDLDLSFRSISPTPPPPPPLQESSSQLKHMLLAENQPVVVPGAGVGVGAAAAPPQPPLKIQVKSLDQLVDKKPSQEKSSPSAALDFSMDVLDLSKKPSSGSAAVTPTPTPAPAPLAPPPGVPGVPGAPDLAAALEQHQLLLAQQQLFAGAAGDAASQYVQQLFRSLMFQSQTPGFPYFSFMGPPPPQANPEKPPPLVSPPTRGLNPLPLGGVGVPVPPGGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQFYAQRQRSGHHVMRGRGASNAAAAAAAAAAAAGMGIPGTGSASGAGSGAHHHPGHGHGHGHAPISEQVKYAILAQQLKAHKNTDLLQQALAHGSSSVAGNPLLHFGYPLATPPPNSSLHNGAGGQAGNGLPLVAMDDDEPKLIIDEDENDNDNDVEEVEDDEEEEEEEEEDEPEDEPEIIADDEPLPREEEEEEEKPQLDKMEELELPKPLEAAQKTAETILEQAIKAGKPVTTPPPPPKEQQPDQKIAPPAPSTLKTMIAQAESVGKSLKEVASSPFKDESQDLVPVAKLVDNATSQNMSFNSYFRPSDVANHMEQSDEEGLVASGSASESNNSGTEDVTSSSSGSEPKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAMSVYVPTEDVSEPIPVPKSVEEIELEERRRQEAERERERELERARERELERERELEMERERELAEKEKERERQQLIQKLAAQMAAAAAVAASAPGAAGVCPVSGGLDAQAGGDLPYKCHLCEGSFADRLQCLEHIKQAHAHEFALLLAKGAIENESVLGESASGNPQGVQQPPPSQQQHSDDEATNGLVGGAGGRGKYPDYSNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCDICLRKFTLKHSMLRHMKKHSGRAHNGDGPGSDCSDDEQVSSSPPGTPAPPMATATTTAASTAATTNNNNSCHTNNNNVSAKLGLKLPKLHELLDKATEWRASRLAGEHKENLGEATTPTSGSGTDLIGNLLGISDQGILNKLLSSADEAAKLLGVDNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00504177;
90% Identity: iTF_00504177;
80% Identity: -