Basic Information

Insect: Drosophila vallismaia
Gene Symbol: -
Assembly: GCA_035047325.1
Location: JAWNPU010000066.1:11786408-11788236[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.04 3.5 8.4 0.4 2 23 360 382 359 382 0.94

2 7 5.8e-06 0.0005 20.5 0.3 1 23 389 412 389 412 0.98

3 7 8.1e-05 0.0071 16.9 0.5 2 23 418 439 417 439 0.97

4 7 3e-05 0.0026 18.3 0.2 1 23 445 468 445 468 0.93

5 7 1.6e-06 0.00014 22.3 0.7 1 23 474 496 474 496 0.99

6 7 1.9e-05 0.0016 18.9 3.5 3 23 504 524 503 524 0.97

7 7 0.00045 0.039 14.6 0.7 1 23 530 553 530 553 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.04	3.5	8.4	0.4	2	23	360	382	359	382	0.94
2	7	5.8e-06	0.0005	20.5	0.3	1	23	389	412	389	412	0.98
3	7	8.1e-05	0.0071	16.9	0.5	2	23	418	439	417	439	0.97
4	7	3e-05	0.0026	18.3	0.2	1	23	445	468	445	468	0.93
5	7	1.6e-06	0.00014	22.3	0.7	1	23	474	496	474	496	0.99
6	7	1.9e-05	0.0016	18.9	3.5	3	23	504	524	503	524	0.97
7	7	0.00045	0.039	14.6	0.7	1	23	530	553	530	553	0.97

Sequence Information

Coding Sequence: atggaAACTTGCGGCCACATTTACGTTACTAATGATTACGAGAAGTTCCTTATGCGATGCTCCTTATGCCCCACGGATGTGGAGATCGCGCAGTGGCAGGAGTTTGTACTCCACTTCAGGAATATGCACGTCACCCAGGAGACGGAGGAGAAATATAAAGACATCAATCTGGCTTCTCAGGTGAAATCCAATGCTGAAGAAGCACAAGAAGAAAAGTCTCTTTTACCGAAAGACGATCAGATTGATGTTGAGCTGGAAATCGAGACAGTTGAATCTCTTTTTAGCGACACTGAGGAGTCTTTTGTGTCGGATCAGGAAGCAGAACTGGAACTAAGCCAAGGCCAGGATCAAGACTCGGGCGAACAGCCCGAAGAGGATGTCAATATTCTAGCTACACCTATATATAAGTACCAACCGTCTTTTTTTCGAAGAGACCCGCGAACTCCAAGCTTCATTGATATATACAAGGCAAAACCATGCCTCTGGGATCCGAGTCACACAAAATACCAAGATCCCAGTGCTTGCAAGGAAGCCCTTAAACAGATGCTTAGTGAACTGGGAGCCAAGGTTTCTGTCCTTCTCAATGAACAAACCCTTAAGGCGGCCATTAAGAAGATTCACCAACAGTACAACACAGTCCACAAACGTGTGCTTTCTggcaaccaaaaaccaaattccTTAGCCTTTAACAACTACACTCTATGCAGCTTTCTTAAGGTCAACACGGATTGTGACCAACcaaaaaaactcgaaaaaatTCAGCTGGATTTCACAAAGAAGAACAAGCTGACCACCGAACTGATAGAGCTGTATGCCAATTTTCCGCAACTTTATGATCCTACGCACAAGGAGTTCTCCAACATGCATTCCCGCAAACAGGCCTATGAAAGTTTGGCTGCAGAAATTTCAATACCCAATACAGACATCAACAGCGATGACATCTACCGTGCAATCCAAAGACTGCGACAGTGGTATTACAAAAGCACCAAGCACGCAATAAACGCTGGAAAGGGTGCCGAGAAGTTTTATCAGGAGGTGTGCCGATTTATGCCCCCAAAAAAGTTTAAGCAACGTCTTGTCTGTGAGATTTGTCAGCAAGTAACTTCGTCTGATCACGTCCTACAATCACACATCTTTAAAGTGCACAACATCGGCGATCTGCCATTCAAATGTACCCTCTGCGATCGTAGTTTTATTGGACGCGTAGAGCTGGCCAACCACATGCAGAGAATTCACGTTGGCAAAACGCTTAAATGTGACCATTGCGAGAGGACATTTGCGGTGATCGCCGATTTGGAACTACATACTCGAACCCACACGGGGCACAAGCCCTTCGTCTGTGAACAGTGCGGCAAAGCCTTTCGCCTTCGTTCTCAAATGAAGCTTCACATCACTGCCATCCACACCAAGATAAGAGCCTTCAAGTGCGACATGTGTCCCAAGGACTTTATAAAAAAGGTTAATTTGACGGACCACATAAAGAGTCATCTGAATATTCGCGACAAGATTTGCAGCGAGTGTGGCAAGGGATTCACCAGCTGTCATTCCCTTATCCGCCACCGTCAGATCCACTCCAAAGTGAAAAAGTTCGTGTGTAAACTTTGCGAAGCCAGGTTTTCCCAGTTTGTCGGTTTAAATTCGCATTTGAAGCGCACACACAGCATAGTTCGCGGCCAAGGACAAAAACCAAATGCAATTCTTCCTGCTGAgaactaa
Protein Sequence: METCGHIYVTNDYEKFLMRCSLCPTDVEIAQWQEFVLHFRNMHVTQETEEKYKDINLASQVKSNAEEAQEEKSLLPKDDQIDVELEIETVESLFSDTEESFVSDQEAELELSQGQDQDSGEQPEEDVNILATPIYKYQPSFFRRDPRTPSFIDIYKAKPCLWDPSHTKYQDPSACKEALKQMLSELGAKVSVLLNEQTLKAAIKKIHQQYNTVHKRVLSGNQKPNSLAFNNYTLCSFLKVNTDCDQPKKLEKIQLDFTKKNKLTTELIELYANFPQLYDPTHKEFSNMHSRKQAYESLAAEISIPNTDINSDDIYRAIQRLRQWYYKSTKHAINAGKGAEKFYQEVCRFMPPKKFKQRLVCEICQQVTSSDHVLQSHIFKVHNIGDLPFKCTLCDRSFIGRVELANHMQRIHVGKTLKCDHCERTFAVIADLELHTRTHTGHKPFVCEQCGKAFRLRSQMKLHITAIHTKIRAFKCDMCPKDFIKKVNLTDHIKSHLNIRDKICSECGKGFTSCHSLIRHRQIHSKVKKFVCKLCEARFSQFVGLNSHLKRTHSIVRGQGQKPNAILPAEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00546183;
90% Identity: iTF_00546183;
80% Identity: -