Basic Information

Insect: Drosophila vallismaia
Gene Symbol: Clamp
Assembly: GCA_035047325.1
Location: JAWNPU010000056.1:224800-226785[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.00079 0.069 13.8 0.7 1 23 126 148 126 148 0.99

2 7 0.00017 0.014 15.9 0.7 1 23 360 382 360 382 0.97

3 7 4.3e-06 0.00038 20.9 0.1 1 23 388 410 388 410 0.99

4 7 2.4e-06 0.00021 21.7 3.2 1 23 416 438 416 438 0.99

5 7 2.7e-06 0.00023 21.6 0.3 1 23 444 466 444 466 0.98

6 7 1.2e-06 0.0001 22.7 0.4 1 23 472 494 472 494 0.98

7 7 5.1e-05 0.0044 17.6 0.1 1 23 500 522 500 522 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.00079	0.069	13.8	0.7	1	23	126	148	126	148	0.99
2	7	0.00017	0.014	15.9	0.7	1	23	360	382	360	382	0.97
3	7	4.3e-06	0.00038	20.9	0.1	1	23	388	410	388	410	0.99
4	7	2.4e-06	0.00021	21.7	3.2	1	23	416	438	416	438	0.99
5	7	2.7e-06	0.00023	21.6	0.3	1	23	444	466	444	466	0.98
6	7	1.2e-06	0.0001	22.7	0.4	1	23	472	494	472	494	0.98
7	7	5.1e-05	0.0044	17.6	0.1	1	23	500	522	500	522	0.97

Sequence Information

Coding Sequence: ATGGAAGACCTTaccaaaaacataattttcaCAAATGCAATCAACGGACAACCGGCTACGATTCAGTACCAGACAGCTGATGGCACCATACTTAAACAGCCGAAGATTGAGGGGCAAAAAACTGACCAACCGACTTTTTATTACACGACAAATGGAAATGGGGGAACCGTCAATCTCGCCCAGCTTGCCACCACGGATGACAACAAAACCTGCTATATTGCCCAACCAGTCGGTGGATACAATTATGCCTTAGTGAATGGGATGCCGCTAAATCAAGGAACGGCGTTAGGCATAGCAACAGTTGATGCCCAAGGGCGCATCCAGATCGTCAATCAGAACAAGCCAATTACAACTAATACCATATCTAATATCAGTTTTAAGTGTGATGTTTGCTCCGACATGTTTCCTCACCTCGCCTTACTTAACGCTCACAAACGGATGCATACAGAAGGTGAACAGCAACAACACTCCTCCCAGCAGGGTGGCGGTGAATCTCTAGCTGTCGTTAATGCGCAGGGGTTGGTGCAAGCGCAAAACATTATTAACAACGGGCAGATGGGACAAATACAGATAGTTGCATCTGACTCGCTTGAACCAGTTCAACAATCTGTAATGCAGCAGCCTGATACCAAAGGGAGCAAATGTATCAATTGTGGAGGCCTTATCCTGCAGCAAATAAAACGAAAGGGCCCGAAGCAAGTACGATGCGAAACGTGCATCCAAGCAGAGCAAGCggctcagcagcagcagcaacttttTGTTGCACAAGACGGCCAAATTGCGCACCCAGTTCAAATCATATCAACAACACCGCAAGCCCAAGCTCAACTTCAGCAAATTGTAGCCGCGCAGACCGGCGGTACCACACCAAAAAGGGAACCTACTACCGGAACCGCCCACCACCCAGTAAAAAAACGAAATTCCCAGCAGATGACAAAATGTCAAAAGTGCAACGGCTCCGGAATGGTAATCGTGGGACAGCATACTCACGGGGGACTAGGTGGAGCTGGAGGCTCGGTTAAACAAACAGTCACTGTAAAAACTGAGTGTTCGACTTGCAGAAATCCATCGAAACCGTTCAGCTGTAACATATGTGGTGGACTCTTTTCGCGATATTCGAGTCTTTGGTCCCATAAGAAGCTACATAGTggagaaaaaaattacaagTGCAGCATCTGTGGACTTGCTTTTGCCAAAGCTGTTTATCTAAAAAACCATGCCAGAATTCATACGGGAGAAAAGCCCTATaaATGTCAAACCTGCGGTATGCAGTTCTCCCAATCGCCACATCTAAAAAATCATGAACGTACTCATAGTGGTGAGCGACCATACGTGTGTGGAGTGTGTGATAAAGGATTCGCCAGACACGCAACTCTTTGGAACCATAGGCGAATCCACACAGGCGAGAAGCCTTACAAGTGTGACATCTGTGGGTCGGCATTCTCACAGGCTGCACATCTTAAGAACCATGCCAAGGTGCATTCCGGTGAGAAGCCATACAAATGCGAGATCTGCTCTGCTGCGTTCGCTGATCGTTTTGCCCTTAAGCGACACCGTGGCATACATCAGAAATATGGACAGACAGCACCTCGACAACCTGGTGGCGAAGGAATGATAGTGCATAAACAGGAGATACCTGATATGGACGACGAAGCTCAACAGGAGGTTATTATTGGAGGATTATAG
Protein Sequence: MEDLTKNIIFTNAINGQPATIQYQTADGTILKQPKIEGQKTDQPTFYYTTNGNGGTVNLAQLATTDDNKTCYIAQPVGGYNYALVNGMPLNQGTALGIATVDAQGRIQIVNQNKPITTNTISNISFKCDVCSDMFPHLALLNAHKRMHTEGEQQQHSSQQGGGESLAVVNAQGLVQAQNIINNGQMGQIQIVASDSLEPVQQSVMQQPDTKGSKCINCGGLILQQIKRKGPKQVRCETCIQAEQAAQQQQQLFVAQDGQIAHPVQIISTTPQAQAQLQQIVAAQTGGTTPKREPTTGTAHHPVKKRNSQQMTKCQKCNGSGMVIVGQHTHGGLGGAGGSVKQTVTVKTECSTCRNPSKPFSCNICGGLFSRYSSLWSHKKLHSGEKNYKCSICGLAFAKAVYLKNHARIHTGEKPYKCQTCGMQFSQSPHLKNHERTHSGERPYVCGVCDKGFARHATLWNHRRIHTGEKPYKCDICGSAFSQAAHLKNHAKVHSGEKPYKCEICSAAFADRFALKRHRGIHQKYGQTAPRQPGGEGMIVHKQEIPDMDDEAQQEVIIGGL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00537677;
90% Identity: iTF_00524568;
80% Identity: -