Dval001602.1
Basic Information
- Insect
- Drosophila vallismaia
- Gene Symbol
- -
- Assembly
- GCA_035047325.1
- Location
- JAWNPU010000005.1:490690-493875[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00076 0.066 13.9 2.4 1 23 174 197 174 197 0.95 2 15 0.0096 0.83 10.4 4.1 1 23 214 237 214 237 0.93 3 15 0.00091 0.079 13.6 3.2 1 23 308 331 308 331 0.96 4 15 0.001 0.09 13.4 1.2 2 23 384 405 383 405 0.97 5 15 0.017 1.5 9.6 0.6 1 23 549 571 549 571 0.94 6 15 0.00023 0.02 15.5 0.5 1 23 578 601 578 601 0.96 7 15 0.00018 0.016 15.8 2.0 1 23 609 631 609 631 0.98 8 15 0.011 0.96 10.2 0.1 3 23 659 681 658 681 0.91 9 15 0.0004 0.034 14.8 1.0 1 23 716 739 716 739 0.96 10 15 4 3.5e+02 2.2 0.1 1 21 746 766 746 767 0.91 11 15 0.01 0.9 10.3 0.2 1 23 776 799 776 799 0.97 12 15 1.4e-05 0.0012 19.3 0.5 1 23 820 843 820 843 0.97 13 15 0.033 2.9 8.7 0.2 1 23 853 875 853 875 0.94 14 15 5.6e-05 0.0049 17.4 3.7 1 23 881 903 881 903 0.99 15 15 1.1e-05 0.00098 19.6 1.2 1 23 909 931 909 931 0.97
Sequence Information
- Coding Sequence
- ATGACCAGAACATGCAGGATTTGCGGCGGAGCCGAAGGGCGATACTGGATCGAGACGCCTGTGGAGAAGTACGCCGAGAAGACCTTCGGCCAGCTACTAACTGAACTGGCCAGAATTGAGGTGACTATTCTTATGAGCGAGAAGCTCCCGCAGTGGCTCTGCGCAGCGTGTGCTCGTAAGCTAGAAACGGCCTACGAATTTGTAATGCAAGCTAAACAGACGCACAAACTATGGCTCCATAAATTGGACAACGAAGCTAAGGATCGGGACGCAGAGTCGCAGGGAACTGAAGCTTTGGAGTGCCTCAGGGAGACGCCTATCCACCTGTTCGAAATCGAGGGAGCAACTATTAAAACTGAGGAACTAGACACCACGACTCCAGTCACGAGAAAGGACCCTCTCGTGCGTCAGCGCATGGTCAAACGGAGTAGTATGCACTTCAGTGACTCTGACGACGACCAAGACAATGTACGCATTCGTCAGCACCGCAAACACTTGCCGTTTTCTGCTGAAAAACAGCATATCTGCGGTCTGTGCAACAAGGCTTTTCGATATGTAACAAATCTGTATCGCCACAAGCAGCGGGACCATGGAGGGCACCGAACACCCGGAACTGAcCTTAACGAAGATGAAAACTACTATAAGTGCGATGAGTGCGACAAGTCCTACAGTTACGTTATGGATTTCGTGCATCATAAACACAATGAACACGGTACTAGTCTGCTCCCCTCAAAAATATACCGGCGTAGAATGCCTGGTCGGCCAACATCAATGACCGGGGAAATAAGCCCCTCAAGTCCTCCCTCCACGTCAGGAACTTTTACACAGCGAATCCAAAGCAACAGCGACACATTGGTGCACAGCATCGTCAAAAACTTGGTGCTGTCGGATGAAGATGACAACAGCAGTACAGAAAATTACTATAAGTGTGATCAGTGCCCCAAGTCGTACAAATACGTCGTCAGCCTAATCAAACATAAGCATCGCCAGCATTCTGGGGAAGATAGGGTATCAGAGGTGGAGGAGGATCAGCCCGTGGCTTCTACGTCAGGTGTTAGTACAACTTCcgtctcaaaaccatcaagGATCAATCGGCGCGTTGATGGCTTCGATCTTCATCGATGCGAACCAAATGGTGCTAAGGAAATAAAGTGTATGATTTGCTTGAAACGATTTACGAAGCTTCGGCAGTTAAGAGATCACCTAGAATCGCACCCCACCGATTTTGACTTTGAATCCCATGGAGAACCAATCGAGAGAATCGCCGAGGGATTCTTTAAGACCGCCGTAGAGTCGACATCGGAAGGGTTGAAGCGTAGGATATTACGAGATCTGAGAATGGGCGTTTATGGACGCTATTATTCTATTACAAATCAAGCTCGATACGAAATGAGTCTGGATAGTTCAGATACAGACagtgatggtgatggtgagGATGTTGTAGTGAGACGTAGCTATGCTTGCGATCTTTGCGATGCTCCTGATGCCAGATGGCCTCGAAAATACCAACTTCATAAGCACCATCTTCAAGAGCACAGTTGGTTAGATGCTCCACATGTCTGCCTGCGCTGCGATTCCAGGTTTTTGAACGCCGGTCTCCTGGATCACCATACCAGTCAGCTGTGCCAAAACACGCTAAAGCGATTCATGTGTGACAAGTGCCCACAGCGCTTTTTTTGGCGCCGTAATCTCCGTGCCCATCTTGTTGAGCATAAAAGCAAGCAAGAGAACTACCCGTGCGATCAGTGCTCCCGTAGCTTTCAAGACCAAAGTGCCGTAACCAAGCACAAATTAATGATGCACCGGGATAGTAGCATGCAACTGTTTCCCTGCCGCTGGTGCACTCGCACTTTTTACCGACCCGCCTTGTTGCACAAACACGTCCAACGACATGGATTCAGTGGCAATGACTTGCCGTTGGCAGAGACTCTTTTGGCTGATGCCGCCAAAGCGTCTAAGCCGAAAACTATCCTGTGCAAGTTGTGCGAAATCCAGTTTATTAGTGTAGTTGATCTGCGACGGCACATGTCCATGCAGGGCCACAGCGACCAACCGTCGGCCTACATGATTAGTACGGATGCTGGCTTTGAATTGCTGCTGGATGAAACCGATGACAGCGACGAGGAGAGCTCCTCAGGGAGATGCTACTCTTGTGATATCTGCCAACTTAGTTTCAGACGCAGAAAAGAGATAAACGAACATCAGTACTCCCTGCATAGCTTTGACAAGCTGCCCTACGCCTGTGAGCTCTGTATTTTCAAAACGGTTGATAAGGGTCTCCTGAATCAGCATCTGCTCAACCAGTGTCGGAACAGCGAAAAACAATATGTCTGCTCGCGCTGTGGATACAAATTTATGTGGGAGGAAAACCTGGCGCAGCACCTGGCCACTCAGCATCCCAAACATCAGGCCGTTCCGGAACAACAGCCACCACTACGGCGCAAGAGGAGGTTTCGCTATCAGTGTCCTCATTGCTGGCGATCCTTTGTGGTGCAACCTAGTCTGGACAAACACATCCGAGATATGCATGTGGCCAAAAGGAATCCGGGCAAGAAGTATCTTTGCTCGCTGTGCGGCTTAGAATCGCTCACGCCGAATAAACTGAACATCCATATGCGGCGACACATGGGCGAGAAACCTTTCAAATGCGATCTCTGTGACATGCGTTTTACGGTTCACTACGAGCTGAAGGTCCATCGGCGCAAGCATACCGGCGAAAGACCCTATCAGTGCACCTTCTGCTCCAAGGAATTTGCACGCCCCGATAAACTGCGGCGACATGTTTTTATCCACAACGTAAAATCGTAG
- Protein Sequence
- MTRTCRICGGAEGRYWIETPVEKYAEKTFGQLLTELARIEVTILMSEKLPQWLCAACARKLETAYEFVMQAKQTHKLWLHKLDNEAKDRDAESQGTEALECLRETPIHLFEIEGATIKTEELDTTTPVTRKDPLVRQRMVKRSSMHFSDSDDDQDNVRIRQHRKHLPFSAEKQHICGLCNKAFRYVTNLYRHKQRDHGGHRTPGTDLNEDENYYKCDECDKSYSYVMDFVHHKHNEHGTSLLPSKIYRRRMPGRPTSMTGEISPSSPPSTSGTFTQRIQSNSDTLVHSIVKNLVLSDEDDNSSTENYYKCDQCPKSYKYVVSLIKHKHRQHSGEDRVSEVEEDQPVASTSGVSTTSVSKPSRINRRVDGFDLHRCEPNGAKEIKCMICLKRFTKLRQLRDHLESHPTDFDFESHGEPIERIAEGFFKTAVESTSEGLKRRILRDLRMGVYGRYYSITNQARYEMSLDSSDTDSDGDGEDVVVRRSYACDLCDAPDARWPRKYQLHKHHLQEHSWLDAPHVCLRCDSRFLNAGLLDHHTSQLCQNTLKRFMCDKCPQRFFWRRNLRAHLVEHKSKQENYPCDQCSRSFQDQSAVTKHKLMMHRDSSMQLFPCRWCTRTFYRPALLHKHVQRHGFSGNDLPLAETLLADAAKASKPKTILCKLCEIQFISVVDLRRHMSMQGHSDQPSAYMISTDAGFELLLDETDDSDEESSSGRCYSCDICQLSFRRRKEINEHQYSLHSFDKLPYACELCIFKTVDKGLLNQHLLNQCRNSEKQYVCSRCGYKFMWEENLAQHLATQHPKHQAVPEQQPPLRRKRRFRYQCPHCWRSFVVQPSLDKHIRDMHVAKRNPGKKYLCSLCGLESLTPNKLNIHMRRHMGEKPFKCDLCDMRFTVHYELKVHRRKHTGERPYQCTFCSKEFARPDKLRRHVFIHNVKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00550395;
- 90% Identity
- iTF_00504135;
- 80% Identity
- -