Basic Information

Insect: Drosophila truncata
Gene Symbol: -
Assembly: GCA_008042515.1
Location: VNJQ01001549.1:36806-54513[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.00015 0.013 16.0 4.6 1 23 367 389 367 389 0.98

2 7 1.6e-05 0.0014 19.0 5.2 1 23 395 417 395 417 0.98

3 7 2.9e-07 2.5e-05 24.5 0.9 1 23 423 447 423 447 0.99

4 7 1.9e-05 0.0016 18.8 0.7 1 21 459 479 459 480 0.93

5 7 0.58 50 4.7 1.0 2 23 503 525 502 525 0.92

6 7 0.00032 0.028 15.0 2.2 1 20 593 612 593 615 0.94

7 7 0.0093 0.81 10.3 0.0 2 21 629 648 628 649 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.00015	0.013	16.0	4.6	1	23	367	389	367	389	0.98
2	7	1.6e-05	0.0014	19.0	5.2	1	23	395	417	395	417	0.98
3	7	2.9e-07	2.5e-05	24.5	0.9	1	23	423	447	423	447	0.99
4	7	1.9e-05	0.0016	18.8	0.7	1	21	459	479	459	480	0.93
5	7	0.58	50	4.7	1.0	2	23	503	525	502	525	0.92
6	7	0.00032	0.028	15.0	2.2	1	20	593	612	593	615	0.94
7	7	0.0093	0.81	10.3	0.0	2	21	629	648	628	649	0.93

Sequence Information

Coding Sequence: ATGGATGCTGCTGACTTTTGGCAACAGGCTCGTGCTCCGTTTGGCTTGCAAACAGCATTACATCAGTACAACTCCAACCAGAGTACTTCTCATCCCCATCACAACACCATGCACTCGACCATCATTCCGCAAGAGGAGCACGACTTGTTATCCGACATTCATCCCCAAGACGGGACTATTACTGGCACTGACTCCGGGCCAGGCCATGATCCGCCGAAGAAGCTCGAAGCCagccaccatcatcatcaccacatGCCACAGGCGGAAAACCAGCAATCCTATGCTGGGCAGGACGCAGCTCCACAACTGAGTAACCATCACTTGCTGTTcaatgccgctgccgctgcggcggctgctgctcatCTCAAATCCACTGCTGCCATGCAGAACAATCTGTCATCGCCGTTGCGGGATCAGAAGCAAAACTATGGCTTGTGCGCGATCAAACCGAAACTGGAAGTCGAGTCCAAGCCAAGTCGACAGCAGTCCATGAACGATtgccatcagcagcaacagcagcagctgacaTATGCCGGCGATTTCTATGATGATAGAGGACTCGGAGCCACGGAAACACCGGCTAGTGTGGGGTCCACCACCGATGCCGAGTCGCAGTCTCAGTCGCAACAGAGTTTGGTAATAACCGGCAGAGGATGTCCTCAAGCACCGCCAGAACTTGGCAGCAAAGCTACTCTATCGCCAGGACACCCAGGAGGAGAATGCGGAGCAGCAGGTCCTGAGTCGGTCGGGGGTCCGGGGTCAGAGTCTGGGCCAACGACAATCATAAGCAACAGtcaccagcagcagtcgcCGCAGCATTCGATAACGCCCTCCGGCGGCAGTTCGACCcctgaaattaaatacaataaggACAAAATGGCCAACGATATTCAGcttCAGCTATCCCGGTCGAGCAGCGCGGCCGCGATCAGTGAACGCACCCTTGAAGAATGTTGGTCAACCCTGCAACGACTCTTCATGCACAAGAGCGCCATGCAGCAGATCCAACAGCAGATACCACGCGTCGGTTTGGGTGGCGGCGGAACTGGGACTTCTAATCTTGGTGGCAGTATTACGCCAGGGGCAGACTCCAAGCCGCATCAGTGCCAGCAGTGCATGAAAAGCTTTTCCAGCAACCACCAGCTCGTCCAGCATATTCGTGTCCATACCGGAGAGAAGCCCTACAAGTGTTCCTACTGTGATCGTAGATTTAAGCAGTTGTCACATGTCCAGCAGCATACACGTCTTCACACAGGAGAACGACCCTACAAATGCCATTTGCCGGACTGCGGTCGAGCGTTTATCCAGCTTTCGAACCTCCAACAACATCTGCGCAACCATGATGCCCAGGTGGAAAGGGCAAAGAATCGTCCATTTCATTGCAATATATGTGGTAAAGGATTCGCCACCGAATCAAGCCTGCGCACCCATACATCAAAAGAGCTACAGCTGCATCTTGGTGTCTTGCAGCAGCATGCGGCACTCATTGGCGGTCCCAACGCAACCTCCTGTCCCGTTTGCCACAAACTCTTCCTGGGCACCGAAGCCCTGGTGGATCATATGAAGCATGTTCACAAGGATAAAAGTCCGACGCTCAGTGGATCAGCAGTAAATCAATTCAGTGACCTTAATCAGGCGGCCGCGACaggaagtggaaatggaattgGAACTGGCAGCGGGGAACAGCTGTGCGCATCCTCGGAATCAAGCTGTGCCCAAGCTCCGAGTGGCTCAAACCTTGCTGATAGCTACCTGGGGAAGCGGAGGACAGCCAATCATCCGTGCCCAGTGTGTGGCAAGCATTATGTCAATGAGGGCTCTTTAAGGAAACACTTGGCCTGTCACGCGGAGACTTCTCAGCTAGCCAACAGTCTGCGAATGTGGCCCTGCAGCGTTTGTCAAGCCGTCTTTACCCatgaaaatggTCTTCTAACCCACATGGAATCGATGCGTATGGATCCAAAGCATCAGTTTGCGGCTCAATATGTCTTGTCTCGAGCAGCGGCTGAACAACGCGAGCGAGACTCTATCTTAGCGGTAACCCTggcggccagcagcagctccgcTGGAACTGCCAGATTGGGAGTTGACCCATCGAGAAGTCTATTGCCAATAGCTGTCGGCACTTCCCGACACTCAGATGGCTCCAATTCAAAGTGCCCATCGCCATCAGCCAATTCCGAATGCTCCTCCACAGGACGCCTCTCATCCTCTACAACCTCTGATCAAGATCAGGAACATGATCAGAGTGAGAACGAGAATTGtcttaacaataataactccaactcaaatttaaacaaaatgacTGAGCTGCGACGCTTGCCCAGAGCAAATCCCGGTCAGTATGGACACATCGACTCCATGGATACCGAACTTCATGTGGCCAACAGGATGTCCCTaatggcagcagcggcagccgctgTGGCAGCTTCAAGACCACAGCAAGAGGGAGCAAGCGTTGATAGTGTCGCCGTGGTACCCAGTGCAGCAGTACAGGCCGCCGTGGTCAACCTGGCTGCGGCTATGAGGATGAACACGTCCAGCAATGGCTCGACGGGAGGATATCAACAGCAGCATTGTGGTGACAACCATTCTCAGGCACACCATCCACACCCACCCCAACATTCACTCCATGCGCAACCACACCCGCAGCCcccgcatcatcatcatcaacagccgcagcaactgcagcagcagcatcaaggTCCGCAGCAGCCACAGTTGTCCCATTTGCTGGGGCATCCGCATCCTGGCAACACCAATTCCACGCGCTCCCAACGATCGCCAAATATAACTGTGCCAAATCTGCAAAACGAATCCTCGCCTGCCGCCATGAATGTTCATATGATGCGCGGCTCTTTAGATCATCAGGATTCCGCCTCTCACTTGGGCTCCATGCACCCCATGGATGTTATTCATCAGCaacaccatcatcatcagacGTCCAACTATTCGCAGCATGCCGTGGCTCCCACCAGCAGTAGCAgtcatccacatccacattcaCACCCACACCACACCGCCTCTCATCATCTGCATCCGGATCCGGAAACGGCGTTGCGGATTCATCAGGCGGAGGCGATCCTGCGATCGCACACAGAGGCAGCCTTTCGGTTGGCCACCGGCGCGGCGGCGGGGGTGAAAAGCGAGTCGGAACAACTTCTCAATGGGAGCAGTAATGCCAGCAGTAGATTCCTTACTCACCAACCGGATCACCATGAGCTGCCCTCCAGTTCAGGAAGCTAA
Protein Sequence: MDAADFWQQARAPFGLQTALHQYNSNQSTSHPHHNTMHSTIIPQEEHDLLSDIHPQDGTITGTDSGPGHDPPKKLEASHHHHHHMPQAENQQSYAGQDAAPQLSNHHLLFNAAAAAAAAAHLKSTAAMQNNLSSPLRDQKQNYGLCAIKPKLEVESKPSRQQSMNDCHQQQQQQLTYAGDFYDDRGLGATETPASVGSTTDAESQSQSQQSLVITGRGCPQAPPELGSKATLSPGHPGGECGAAGPESVGGPGSESGPTTIISNSHQQQSPQHSITPSGGSSTPEIKYNKDKMANDIQLQLSRSSSAAAISERTLEECWSTLQRLFMHKSAMQQIQQQIPRVGLGGGGTGTSNLGGSITPGADSKPHQCQQCMKSFSSNHQLVQHIRVHTGEKPYKCSYCDRRFKQLSHVQQHTRLHTGERPYKCHLPDCGRAFIQLSNLQQHLRNHDAQVERAKNRPFHCNICGKGFATESSLRTHTSKELQLHLGVLQQHAALIGGPNATSCPVCHKLFLGTEALVDHMKHVHKDKSPTLSGSAVNQFSDLNQAAATGSGNGIGTGSGEQLCASSESSCAQAPSGSNLADSYLGKRRTANHPCPVCGKHYVNEGSLRKHLACHAETSQLANSLRMWPCSVCQAVFTHENGLLTHMESMRMDPKHQFAAQYVLSRAAAEQRERDSILAVTLAASSSSAGTARLGVDPSRSLLPIAVGTSRHSDGSNSKCPSPSANSECSSTGRLSSSTTSDQDQEHDQSENENCLNNNNSNSNLNKMTELRRLPRANPGQYGHIDSMDTELHVANRMSLMAAAAAAVAASRPQQEGASVDSVAVVPSAAVQAAVVNLAAAMRMNTSSNGSTGGYQQQHCGDNHSQAHHPHPPQHSLHAQPHPQPPHHHHQQPQQLQQQHQGPQQPQLSHLLGHPHPGNTNSTRSQRSPNITVPNLQNESSPAAMNVHMMRGSLDHQDSASHLGSMHPMDVIHQQHHHHQTSNYSQHAVAPTSSSSHPHPHSHPHHTASHHLHPDPETALRIHQAEAILRSHTEAAFRLATGAAAGVKSESEQLLNGSSNASSRFLTHQPDHHELPSSSGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00488895;
90% Identity: iTF_00491731;
80% Identity: -