Basic Information

Insect: Drosophila truncata
Gene Symbol: -
Assembly: GCA_008042515.1
Location: VNJQ01007617.1:385376-387485[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 2.5e-06 0.00022 21.6 0.5 1 23 393 415 393 415 0.98

2 7 6.7e-05 0.0059 17.1 0.4 1 23 421 444 421 444 0.98

3 7 0.52 46 4.8 0.1 3 20 452 469 450 473 0.89

4 7 7.9e-05 0.0069 16.9 2.1 1 23 496 518 496 518 0.98

5 7 4.4e-07 3.9e-05 23.9 0.5 1 23 524 546 524 546 0.98

6 7 0.0011 0.097 13.2 0.3 2 23 553 574 552 574 0.96

7 7 0.00022 0.019 15.4 2.2 1 22 580 601 580 604 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	2.5e-06	0.00022	21.6	0.5	1	23	393	415	393	415	0.98
2	7	6.7e-05	0.0059	17.1	0.4	1	23	421	444	421	444	0.98
3	7	0.52	46	4.8	0.1	3	20	452	469	450	473	0.89
4	7	7.9e-05	0.0069	16.9	2.1	1	23	496	518	496	518	0.98
5	7	4.4e-07	3.9e-05	23.9	0.5	1	23	524	546	524	546	0.98
6	7	0.0011	0.097	13.2	0.3	2	23	553	574	552	574	0.96
7	7	0.00022	0.019	15.4	2.2	1	22	580	601	580	604	0.91

Sequence Information

Coding Sequence: ATGAGATGTGTCGTGCCCAATTGCAGGAATGCTACCATAAGCAGATCCAAGAGAAACctggatcagcagcagcagccggttTCTTTCTTCCAATTTCCCAAATCCCCGGAATTATTCAACAGATGGCTGTCGTTCTGCAGCGGTTCAAAGAATGCCTTAAAGGTAAAGAATCCGTGCATCTGCGTCGAGCACTTCCGAGACGAGGACATTGAGGGgaccatcaaatttgaaatggGTCTTGCCAAGAAGAGAACGTTGCGTCCAGGTGCGGTTCCGTGCATAAACAAGAACCAGGAAAGCTCTTCGGAAAAGGCCCGTTTAGAGCGCTCGAAGAGGCGTAGTAACCACAAACTGGTGGCCGAACTACTCCTAGAGGATGAAGCCAGGTCTAATGCGGCGACAGAAGTGTTTCCTACGCCCAACTATGTCCGGTTGAATACGGGAATTGCTTCGGCTCCTCCGTTCGTTAGTTCCACGCCAGGCGAAGATGGGTTAACTTCTTTAACCGTGGAAGACGATCCGCTGGTGGCCGCagtaaaaacagaaataacggACAGGTGCCGCACCTGCTACAAGGATTTTGTTGTCGATGAAAATGCCAAAGATCTCTTTGACCCCGCCAACAGTGTGCTGATTTTCCACATTGAAGTCATTAGCGGAGTTTGGATCAGATATATCGAAGGGGAACCCCAGCTCATATGCCCCGCATGTCAGATGTCCCTCCAGATGGCCATTGAGTTCCGGGAGATGTGCATAGGCATTGAGCTGAAGCTCAGCCAGCCCAAGCTTGAAATTGATGATGAAGCCGAGAGTCTGGAGCCAGTCCAGGAAGAGACATCAGAACTTGATATGTATTCGGGCTCGGAATCTTCCAATCTCGACGAATATCCTCCAGACGAGCCTCTCTCCAATACTGACCTAAACCTAGAGTCGGTGGCCGAATCTCCCGAGTGGTGTTCACACGATCCACTTAGTGTGGCCCCTGGAACCACAATTGTCAAGGATTTAATCAGCCAATATACGGGAAAGTTCACAACCAAGTCAAAAAAGGAGGCGATCGCACACAAGCCTTCTCATGTGGATTGCGAAGAAAAACCGAAGAGAATAGCCAACACCAGGACCAAAGAGGAGAGGAATCTTATCCGTCGTGCCCGGATCCGAGCCAGGCCCACAAACTTTGTATGTGATCAGTGCGGCCAGGCCTTTCGCATGGCTCACAACCTGCAAATTCACATCCTCCGGCACACCCGGACCAAGAACTACCAGTGCACCGAATGCCCCATGACCTTTTACGATGCCTACATGCGCAACATTCACATTCGAATCAAGCATCGCGGAGAGATGCCCTTTGGCTGTCGATACTGCAAGGCAACGTTTGCCTATGCGGGAGCGCGTCAGAAACATGAGGGtGGCGTCCATGGAGCACCACCCCGGCGGATCGTGAAACGAATCAATGCTCAGCCCATGCCCCGCTCCAAAACGCGCTATCATTGTGAACTCTGCGAGAAACACTACGCCTCCAAGTACGCCCTGGCATGGCACATCAAATCACACACGGATGCCGGTGCCTACAAGTGTCAGCTGTGCGATAAGAGCTACTCGGATCCGGCCACGCTCAAGCGTCACGAAATAACCCACGACGACAAGAGACCGCTGCAGTGCGAGGTGTGCCTGAAAGGATTCTACCAACAAACGAAGCTCAGGGAGCACGAGCTTATCCACACCGGCGAGCGTCCCTATCGGTGCGAAATTTGCGATGTCCACTTCCGGTACAAATACAATATGAAGGTGCATGCAAATAGCAAAATGCACCAGGAGAACCTCGCGAAACTGCAGTCCAAtcaaattgttgaaatttaa
Protein Sequence: MRCVVPNCRNATISRSKRNLDQQQQPVSFFQFPKSPELFNRWLSFCSGSKNALKVKNPCICVEHFRDEDIEGTIKFEMGLAKKRTLRPGAVPCINKNQESSSEKARLERSKRRSNHKLVAELLLEDEARSNAATEVFPTPNYVRLNTGIASAPPFVSSTPGEDGLTSLTVEDDPLVAAVKTEITDRCRTCYKDFVVDENAKDLFDPANSVLIFHIEVISGVWIRYIEGEPQLICPACQMSLQMAIEFREMCIGIELKLSQPKLEIDDEAESLEPVQEETSELDMYSGSESSNLDEYPPDEPLSNTDLNLESVAESPEWCSHDPLSVAPGTTIVKDLISQYTGKFTTKSKKEAIAHKPSHVDCEEKPKRIANTRTKEERNLIRRARIRARPTNFVCDQCGQAFRMAHNLQIHILRHTRTKNYQCTECPMTFYDAYMRNIHIRIKHRGEMPFGCRYCKATFAYAGARQKHEGGVHGAPPRRIVKRINAQPMPRSKTRYHCELCEKHYASKYALAWHIKSHTDAGAYKCQLCDKSYSDPATLKRHEITHDDKRPLQCEVCLKGFYQQTKLREHELIHTGERPYRCEICDVHFRYKYNMKVHANSKMHQENLAKLQSNQIVEI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00524598;
90% Identity: iTF_00612848;
80% Identity: iTF_00612848;