Basic Information

Insect: Drosophila truncata
Gene Symbol: -
Assembly: GCA_008042515.1
Location: VNJQ01007875.1:64238-66287[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.035 3.1 8.5 0.4 2 23 283 305 283 305 0.92

2 10 0.00021 0.018 15.5 0.8 6 23 314 331 314 331 0.99

3 10 1.2e-05 0.001 19.5 0.3 1 23 337 360 337 360 0.98

4 10 0.00016 0.014 15.9 0.5 1 23 372 394 372 394 0.96

5 10 0.012 1.1 9.9 5.5 1 23 401 424 401 424 0.97

6 10 6.1e-05 0.0053 17.2 1.9 1 23 430 452 430 452 0.96

7 10 0.074 6.4 7.5 0.4 2 23 461 482 460 482 0.96

8 10 2.2e-05 0.0019 18.6 2.3 2 23 488 510 487 510 0.95

9 10 1.1e-06 9.9e-05 22.6 0.4 2 23 517 538 516 538 0.96

10 10 0.00016 0.014 15.9 4.4 1 23 544 567 544 567 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.035	3.1	8.5	0.4	2	23	283	305	283	305	0.92
2	10	0.00021	0.018	15.5	0.8	6	23	314	331	314	331	0.99
3	10	1.2e-05	0.001	19.5	0.3	1	23	337	360	337	360	0.98
4	10	0.00016	0.014	15.9	0.5	1	23	372	394	372	394	0.96
5	10	0.012	1.1	9.9	5.5	1	23	401	424	401	424	0.97
6	10	6.1e-05	0.0053	17.2	1.9	1	23	430	452	430	452	0.96
7	10	0.074	6.4	7.5	0.4	2	23	461	482	460	482	0.96
8	10	2.2e-05	0.0019	18.6	2.3	2	23	488	510	487	510	0.95
9	10	1.1e-06	9.9e-05	22.6	0.4	2	23	517	538	516	538	0.96
10	10	0.00016	0.014	15.9	4.4	1	23	544	567	544	567	0.96

Sequence Information

Coding Sequence: ATGATCTGCCGCCTTTGCCTGCGCTGCCTCAGCTCCGGCAGCGCTGTCTTCCTATTCGAGACGGACGAGACGCTGGCGGAGACGCGGCTGGTCAAAATGATAGCCAAGTTTCTGCAGTTGGAGATCCTGCCCGACGACAGCATCTCGACCAGCGTGTGCACAGACTGCTGCGAGCACTTGGAGGACTTCAATGGCTTCTGGCAGCTGGTAGAGCAGAAGCAGGGCTCGCTGAAAAAGGAGTTCCTCAACGTAGACGTCGACTGTGTGGCCCTAAAGTGGACTGGTGGCGTGGACGTGGACGTAAACATCGACGAACTGCCGCTACCGGCGACTGACATGGACGAGAAGCCGTTGGACATGCACAATCTAAGCCTACTGGGCAGCGTGTTAGATGTGAATGTAGACAGCGTAGAGGTGGCGTCTCAGGCGCCAGTCTCTGTGCCTGTCAAGGAGCAGCTGCATGACGATGACTCCGAAGAGGACGAGAAGCCCTACCTGGAGGCAATGCACACGAGTGATAGCGAGCCGGAAGCGCCCGAGGCGCTGCCAGAAGAAGACTCTTCGGACGATGAGCCGCTGGTCCGGCTCCAGACCAAAGGCAAGACGCAACCCAAGCGCAAGCGCACCTCCAAGGATCGGGGAAGCGGAATTTCTCTGCAGCAGGAGCTCAAGGACCTGCTCGACGACGGTAGCAAGCGTCGACGCAGAAAAACGGCCGACCAGCGAGTAGCCACCGATGTGCAGGAGCTTGAGCTGCAGGCCGTTCTCGAACGCAAGCCCAAGGGCTGCTCGCGCGCACAGCTGGCCAAGCGGTACGAGGAGGCCATTGCCAGCTACATGAGCGCCAGCTGTGACCTGTGCGACTTCAGCGCCAAGTACCTGTCCGAGCTGAAGACCCACTTCCAGGAGGTGCACCAGCGCGAGTACTACATTAAATGCTGCGGCAAAGTCTTCAGCCGCGCCTGCAAGCTGATGGATCACATCCGCAAGCACGTTAACCCCAAGCTCTTCACATGTACCATCTGCCAGAAATCGCTCAATTCGCAGGACTACCTGGCCACCCACATCGAGACAGTGCACAACAAAGTCGCTCAGATCGATAAGGTGCTCAAGTTTCCCTGCCCCAAGTGCGATCGCACCTTCAGTAGTGAGCGTCGCATGGCTAACCACCTGGTTAAGCATGATACCGACCAGCTGGAGCACACCTGCGAGATTTGCTGCAAGAGCTTTGCCAACGTTCATAGACTGCGAAGGCATATCCAATCCATCCACGAAGACCTGCATCGCCACGTCTGTGACATTTGCGGCAAAAAGTTCAAATTTAAGCCTTCCTTCGATCGGCATCTGCTGGAGCACCAGGGCGTGGTGGCGCCGGCCGTGGAGTGCCCGGTGTGTGGGGTGTGGCTGAAGAATGAGCATAGCCTACGGTTGCATCGCTTCACGCACGACAGCACGGACACCGTGTGTCCGCACTGCGGCAAGACCTGTACCTCGCGCACCGCCCTTCGCGGACACATTAAGTACGCCCACAAGCTGACCACCAACCTGCAATGCACGTACTGTGAGAAGGTATTTAAGCAGCAGCGCAACCTGGACGAGCACATGGCCATCCACACGGGCCTGCAGCTGTACAACTGCCCGCACTGCCCCAAGGAATGCCGGTCCCGCTCCAATATGTACGTGCACATCAAGCAGCGCCACGCGGACGAGTGGTTACGCGCGAAGATGGCGCGCTCGCACAATCCCCAGTTTAAACCGGGATCTGCCGAGGCTCACTCCTGA
Protein Sequence: MICRLCLRCLSSGSAVFLFETDETLAETRLVKMIAKFLQLEILPDDSISTSVCTDCCEHLEDFNGFWQLVEQKQGSLKKEFLNVDVDCVALKWTGGVDVDVNIDELPLPATDMDEKPLDMHNLSLLGSVLDVNVDSVEVASQAPVSVPVKEQLHDDDSEEDEKPYLEAMHTSDSEPEAPEALPEEDSSDDEPLVRLQTKGKTQPKRKRTSKDRGSGISLQQELKDLLDDGSKRRRRKTADQRVATDVQELELQAVLERKPKGCSRAQLAKRYEEAIASYMSASCDLCDFSAKYLSELKTHFQEVHQREYYIKCCGKVFSRACKLMDHIRKHVNPKLFTCTICQKSLNSQDYLATHIETVHNKVAQIDKVLKFPCPKCDRTFSSERRMANHLVKHDTDQLEHTCEICCKSFANVHRLRRHIQSIHEDLHRHVCDICGKKFKFKPSFDRHLLEHQGVVAPAVECPVCGVWLKNEHSLRLHRFTHDSTDTVCPHCGKTCTSRTALRGHIKYAHKLTTNLQCTYCEKVFKQQRNLDEHMAIHTGLQLYNCPHCPKECRSRSNMYVHIKQRHADEWLRAKMARSHNPQFKPGSAEAHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00492388;
90% Identity: iTF_00617789;
80% Identity: -