Dtru012829.1
Basic Information
- Insect
- Drosophila truncata
- Gene Symbol
- -
- Assembly
- GCA_008042515.1
- Location
- VNJQ01005002.1:57887-62316[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0012 0.1 13.1 1.2 1 23 209 231 209 231 0.96 2 19 1.3 1.1e+02 3.6 3.7 1 21 238 258 238 260 0.84 3 19 0.012 1 10.0 0.6 2 23 292 313 291 313 0.95 4 19 0.00063 0.055 14.0 0.5 1 23 386 409 386 409 0.94 5 19 0.0043 0.37 11.4 0.0 2 23 484 505 483 505 0.96 6 19 0.0008 0.07 13.7 1.2 1 23 587 610 587 610 0.96 7 19 0.0019 0.16 12.5 0.5 2 22 621 641 620 641 0.93 8 19 0.26 23 5.8 4.4 1 23 650 672 650 673 0.94 9 19 0.0025 0.22 12.1 1.0 2 23 693 714 692 714 0.97 10 19 3.8e-06 0.00033 21.0 4.3 1 23 721 743 721 743 0.98 11 19 0.0022 0.2 12.3 0.7 1 23 878 901 878 901 0.95 12 19 0.017 1.5 9.5 0.8 2 22 909 929 908 929 0.93 13 19 0.023 2 9.1 3.3 1 23 938 961 938 961 0.93 14 19 2.9e-05 0.0026 18.2 1.4 2 23 980 1001 979 1001 0.97 15 19 7e-05 0.0061 17.0 0.4 1 23 1008 1030 1008 1030 0.98 16 19 0.066 5.8 7.7 0.0 2 21 1057 1076 1056 1077 0.92 17 19 0.0028 0.24 12.0 2.2 1 23 1123 1146 1123 1146 0.96 18 19 0.0037 0.32 11.6 0.9 1 23 1183 1206 1183 1206 0.96 19 19 0.0024 0.21 12.2 1.5 1 23 1232 1255 1232 1255 0.97
Sequence Information
- Coding Sequence
- ATGCTTCCTTCAAATATTTGCCGCACCTGTGCGGTCCAGAACACGGATTTGCGGCCATTGTCAACCTGTCTGGCCAACGATGCCTCAAAAAGTTTCTATGATGTGCTCCAGGAGCTAACGCAAATAGATCCCCTGGTTGAGAGCTCAAGTGACAGTCTACCGCAGCATCTGTGCACCGAATGCCTGGGGAGGCTGGAATGTGCTTACGCCTTTGTGGAACAGGCCAGAAAAGTCAATGGTGAGCTGTTGGTTCGTCTGCGGGAATGCCTCGACGAAATGCCCATTGACATTCCTCAGGAGCAGCACATCAAAACCGAAGTGGATATCGATGAGGCGATTCCCAAGTGTGTTGTGAATGTAGACTCTGCCGATATATCCCCCGTGAAGTTCAAATGGAAGCCGGAAAGCGAAAGCGATAGGGAATTTGCTGGAGCAGCGTCCAGTGATGAGAATGAGGTCGAAAAGAAGCCCTATCCCCTAAGACGCAGTGCGCGCAAAATCAAGCAACCTTTAGAGAGCGATAATGAGGAGTCAGAGCTGCCAACAGAACCATCGCCCAGTAAACGCCGCCGTGGCCGTCCGCCTGGCCCGGCCAAGCGCCAGTCGATGACCTCCGATGGTCGCCATGCCTGTAATGTGTGCGGCAAGACTTTCTCCTGGTTCCGTGATATGCAGCGCCATGCCCGCATCCATTTCGAGAAATCCTACGCATACGTTTGTGACACTTGCGGCAAGGGATTCCTGCGCAAGGATAAGTACACATTCCACTTGCGTTGCCATGAAAAGCGCGATGCCAAATGTAAGGCTCTGCAGCTGGGGAACGAATGGCGCTTCGCCGAACGGCTCTACAGTTCCGGCAGGCTGAAGAGGATCGAGTGCAAGCTGTGTGGCCTGAAGTGTCCGCGAATTCAGGAACTCAGAAATCACTTGGTCAGCCATCAGAGCGCGGAGAGCCTGCTCCAGTTGAGGGAGAACAGCGATGTGATCAAGGAGCATTATGCCGACCAGCCAGGCGACTTGGACAGCGTCAAGCAGCAAATTATCTTGGACATAGCGGCGGGGCACTTGGAGAAATTCGCTTCCATTGTAAATTTCCATGGCTACGAGTTTGGATTGTGTGACTCGGACGAAGAATCTGCCAGCGAAGAGTCCAAATATGAATGCACTGTGTGCAATCTTCCCTTTGCGCGGAAACATCAAGTGGTGAGGCACACGCTTGAGGAGCACGCCCAATCCTCTCCTTCAGAGCTTCCCTGGCAACGCTGCAGCTTCTGTAAAATCGGATTCCTCTGCTCCAAACTCTACGATTGCCATGTGAACACCCAGTGTGACAGCAAACTGCGGCGGCATCAGTGTGCAAAGTGCCCGGGGAAGTTTATGTGGCCGGAGAATCAGCACAGGCACGCCTGCTCCCATCGCAATGAAGAAGCGTCGTCTGCCCGCCAGATTTCCTGCTCCTTGTGCGATGAATCGCTGCCCACTTTGGCCCAGTTGCGCATACATCTGGTTACCCATCAAAGTAACATGAGTGGCATCGATCCGGAGCATAGTTCCATGTTCTTTCGGTCATTCTATCCCAACGGACTGGACTGCACTCCGGAGGAGCTGGGTATCCGCATAGCCGAGGACTTCGAGGTGCAGGACTTCGATCGCTACTACAACGCGTGCACGGCCAGTGGTCAAGAGCTGGATCTCTTCGATTCCGAGACGGAGCAGAGCGGCGACGATCGGGAGGAGGAGTACGATAAGCCAAACTCACACACCTGTTTGCTATGCGGAAAAGTGACAAACAGACTCACTACCCTGCTGCAGCACCAGAACAGCGCCCATTCTAGGGCCACGACAACAGATCTGCCTTGTTCTTGCCAGGATTGTGGCGCTAGCTTCATAAGCGACGCCCTGCTGCAACAGCACCGCCGTCGTATCTGCGGCAAGAAGCATTTCCGCCATCACTGCCCCAGCTGCAATCTTCGGTTCATTTGGCCCAACAACTACGAACTGCATATGAAGAGCCACCATAGCCACGGGGAAGAGAACAATCTCGAAGAGGGTGAGCATCATCGGGAAGCCAAGCTGCAGTGTGATGAGTGCGAAAAGGTTTTTATCTGGCACAAGGATCTCATACGTCACAAGCGCCTGCACCTGCCGCAGTCAGCGCAATTCGAGTGTCCGCATTGCGATCGAAAGTTCCACCGCAAGGATGGCCTCAAGTCTCATCTGCGGGTCCACGCGGAAGAGCAGCTGGTGGAGCAGCCTCTCACATCCGACAGCTTTCAGGTTCTTGCCCTGCTTTCCCGTCCCCATGGCTGTAAGCAGATCCAGTGCATGATCTGCCTCTCACGCCACTCTAAGATCTCTGATCTTCGAACCCACTTGGCCGCCCATCAATACGGATTAAACTTCTCCGCAGAGACTGATATTTCAAGCATTTCAAAGTCGCTGTATCCAGAACTGGGAACCGCCTTGGACAGAGATGAGCTGGCGAAGAGGATTATGGCAGATGTCGACAAGGGAATGGAGCTGGAACGATTCATTTCCATCACCAATGAGTCTGGCTTGGAGCTCAACTTGGACAGCAGCGAAACAGACACTGAAttcgaggaagaggaggaagaaCAGTCCAGCCAGAACTACGCCTGCAATCTCTGTCCCATGGCGGTGAAGAGAAAGCATCAGCTGTACGCCCACCAAGTAAAGAGCCATCAGTGGGAGGAGGCATCGCTCGTTTGTTCGCACTGCCAGGCCAGGTTTGTCAGCGAATCCCTGCTAGATCATCACTCCAGGACCTTCTGCGGCAATGCCCAAAAGCGCTTTCAGTGCCGCAAATGTCCGCTTCGCTTCCGCTGGCGTGAGAACCTAAAGCACCATCTATATTTATCCCATCAGCAGACTGAGGTGCCAGCTGTAGGGGATTCGTTGCAAGCAGAGGCAGAATTACAATGTGGCGAATGCCAGCGAACGTTTAAGATGCAGAAGGATCTCACACGGCACACCTTGATGCACGCCCGGGAGGCGACAATCTATCGCTGCCGCTGGTGTGCTCGTCGATTCTACCGCTGGGCCAATCTGCTGCAACACATCGCGCGCCACGGCATCCGGGCTAGTGAGCTACACTATGCCGAGGCTCTACTGGACTCCTATGGACATCCAGGCGGTCAGAAAACCGTCGAGTGCCGGGTGTGCAATGTCAGCTTCGCCAGTATCGCCGCCCTGCGTCTTCATCTGGAGACCATGCCGGCAGGGAGCCACCACGAGCTCTCATCGTTAAAGAACTACTCAATCACCAACCAAATGGGCTTCGAGCTGGAGCTCCAGGACTCTGAAACGGATGAGGAGCAGTCGAAGCCACCGGGAGTGCCTGCCTACTACACTTGCGGCATGTGTCAGCTGCGGTGCGTGCGGAAGTTCgaactgcagcagcaccagcaggccATGCACCGGCTGGAGAAGATTCCCGATGGCTGCGACCAGTGCATCTTCAAGAGCGTCTGCCCCGACCTCATTGCCCATCACAAGAGGACGCAGTGTGGCAACCGTGAGAAGCAGTTCACGTGCTCCCGCTGCGGCTACAAATTTATGTGGGAGTCGAACCTGCTTACACACATGCAGCTACAGCACGGAAAGACAGACAATCCGGAGCAGGAGGGGGACAAGGAGACTCCGGCAGAAGAGCCGAAGGCCGGGAGCCCGGTTTTCCAGTGTGCCCTATGCCCCAGGAAGTACAACCGAAAGGATCGCCTTACAGGGCATGTGAAAAAGTTCCATGGGCCCGATGGCCCGCGTCCGGATGTCGGAACGGCGTTGAAAAATCATCGCCTGCAGCAGGGCCACTACGAGGAGGGTCAGAATTCTGGGGAAACGGCAAGGAGAACGGTTTTGGAGCAGTTTTCTGTATGA
- Protein Sequence
- MLPSNICRTCAVQNTDLRPLSTCLANDASKSFYDVLQELTQIDPLVESSSDSLPQHLCTECLGRLECAYAFVEQARKVNGELLVRLRECLDEMPIDIPQEQHIKTEVDIDEAIPKCVVNVDSADISPVKFKWKPESESDREFAGAASSDENEVEKKPYPLRRSARKIKQPLESDNEESELPTEPSPSKRRRGRPPGPAKRQSMTSDGRHACNVCGKTFSWFRDMQRHARIHFEKSYAYVCDTCGKGFLRKDKYTFHLRCHEKRDAKCKALQLGNEWRFAERLYSSGRLKRIECKLCGLKCPRIQELRNHLVSHQSAESLLQLRENSDVIKEHYADQPGDLDSVKQQIILDIAAGHLEKFASIVNFHGYEFGLCDSDEESASEESKYECTVCNLPFARKHQVVRHTLEEHAQSSPSELPWQRCSFCKIGFLCSKLYDCHVNTQCDSKLRRHQCAKCPGKFMWPENQHRHACSHRNEEASSARQISCSLCDESLPTLAQLRIHLVTHQSNMSGIDPEHSSMFFRSFYPNGLDCTPEELGIRIAEDFEVQDFDRYYNACTASGQELDLFDSETEQSGDDREEEYDKPNSHTCLLCGKVTNRLTTLLQHQNSAHSRATTTDLPCSCQDCGASFISDALLQQHRRRICGKKHFRHHCPSCNLRFIWPNNYELHMKSHHSHGEENNLEEGEHHREAKLQCDECEKVFIWHKDLIRHKRLHLPQSAQFECPHCDRKFHRKDGLKSHLRVHAEEQLVEQPLTSDSFQVLALLSRPHGCKQIQCMICLSRHSKISDLRTHLAAHQYGLNFSAETDISSISKSLYPELGTALDRDELAKRIMADVDKGMELERFISITNESGLELNLDSSETDTEFEEEEEEQSSQNYACNLCPMAVKRKHQLYAHQVKSHQWEEASLVCSHCQARFVSESLLDHHSRTFCGNAQKRFQCRKCPLRFRWRENLKHHLYLSHQQTEVPAVGDSLQAEAELQCGECQRTFKMQKDLTRHTLMHAREATIYRCRWCARRFYRWANLLQHIARHGIRASELHYAEALLDSYGHPGGQKTVECRVCNVSFASIAALRLHLETMPAGSHHELSSLKNYSITNQMGFELELQDSETDEEQSKPPGVPAYYTCGMCQLRCVRKFELQQHQQAMHRLEKIPDGCDQCIFKSVCPDLIAHHKRTQCGNREKQFTCSRCGYKFMWESNLLTHMQLQHGKTDNPEQEGDKETPAEEPKAGSPVFQCALCPRKYNRKDRLTGHVKKFHGPDGPRPDVGTALKNHRLQQGHYEEGQNSGETARRTVLEQFSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00491633;
- 90% Identity
- -
- 80% Identity
- -