Dtro003959.1
Basic Information
- Insect
- Drosophila tropicalis
- Gene Symbol
- -
- Assembly
- GCA_018151085.1
- Location
- JAECWH010000378.1:3969133-3971783[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0074 0.57 10.8 0.3 2 23 21 42 20 42 0.96 2 13 0.074 5.7 7.7 6.8 1 23 48 71 48 72 0.95 3 13 0.011 0.84 10.3 0.9 1 19 85 103 85 106 0.97 4 13 0.0065 0.5 11.0 2.7 2 22 137 157 136 157 0.95 5 13 0.33 25 5.6 2.0 2 23 445 467 444 467 0.94 6 13 0.015 1.1 9.9 0.9 1 23 492 514 492 514 0.98 7 13 0.24 19 6.0 3.3 1 23 522 546 522 546 0.90 8 13 0.27 21 5.9 2.5 2 23 551 573 550 573 0.94 9 13 0.00029 0.023 15.2 0.2 2 21 586 605 585 606 0.93 10 13 0.00013 0.0098 16.4 0.2 1 23 614 636 614 636 0.98 11 13 9.1e-07 7e-05 23.1 2.8 1 23 642 665 642 665 0.98 12 13 3.6e-05 0.0028 18.1 1.4 1 23 671 693 671 693 0.98 13 13 0.00034 0.026 15.0 2.9 1 23 699 721 699 721 0.95
Sequence Information
- Coding Sequence
- ATGTCCAACAATGTCGCAAAAATGTTGGTAGAGATCACCACAGATGGCATACCCAAGCTCCATTGTCCTGTGTGTAACAAAGCACTCGTGTCCCTGGCCGGCTATGTAAAGCATGTAAAGAAACACGAACCACCAGGAGGATTCCAATGTCGGTACTGTGAGGTCTGCTACTGCCATGAGGATCTGCTGCAGGATCATGTGAAGGCGGAACATCACGATGTCGCCGCTAGCCAGGATGGAGAACGTAAAACTTATGTGTGCAATAAATGTGGGGCAGAGTACAAGTATTTAGAGTCCTATAAAAGACACTGCAATAAGTGTGGCCCCAACAAGCGTACAACTAAGAGCAATGAGAAAACTGAGGAGGACAGTCCAAGTGCAGGAAGCAGCAACTCAGTAAGACAAGTTGAATGTAAATTCTGTTCAACACGTTTCTCTTGCTCGTCGAATCTGATAAAGCATCAACGCAGTCGTCCAGACACTTGTGGACAGGAGATTTATCAAGCAAACCGGAAAAGTTCTATTGATATGGAGAACACAGATGGTTCAAACTGTAAGAAGAAAAAACCCGCGAAACAACGACGTGGTAGAAAAATAGAACCTTCCACATCAGATCAAGAATTCATAAGCGAATCGCCACCAGATACCGATAGCGACGACGATATTCCCTTGGCAAGTCGTCGGAAACCTCATATTCAAACGGCGATTCAGGCGCAGGCGCTTAAACAAGAAGATGGACTCTCCGATTCAACTGAGGAATGCCCAGACTTTGATCCAGCCAATAGTGATAATGAGCAGGATGTAATACAATTCCTTCCCTTGCCTGCGCCCGCCATGGAGGTGAAAGAAGAGGCAGTCGATGAAGATGGGGATTTCGATTATCCCGATGCGAGTTTATTTGTAAAAGCAGAGAGTGCAGCGGATATATTTAGCAATGAAAAGGACAAGTTGTTAGATGTTTTGCTTAGCACCGATGAGGGTGATGGTCTGAAGCCATTTGAGAGTCTAAAGGTGGAACACGCTGGTGGTGGCGGAATCCTTGATGAGATAGCTACAGTTCCATTGACCGAGCATTTGGAAACCGAATTAATTGAAGAAGATGTTCTCGATGTACGGGTGGATAAAACGAAACGAGCTGGCCGAGCGCCGAAAAATAATCAAAATGAAAAACCAAAACGAAAATATCGCAAGAGAAACACTGCAAAGTCACCAAGTTCTGATGAAGACGATGAGATGAATTCCTCTCCAACACCTACTAAACGGGTGTCGAAAATATCGAAAAAAGAACTCAAAGAACGCCTGAAAATGATGAATAAGGTGGAGAAATCATGGAAATGTCCACACTGTGTGAAAATCTATCATATACGTAAACCCTATGAGAAGCATTTGAGAGACGATCATAAACTGAATGAAGATGATATCAAAGATATATTTAAGGATGTGGACACCAATGCCAAACTGGATGAAGAAGTCTTCAAATGCAAAATATGTAGTAAAATCTATTTGGTTGAAAAAAGACTAGAGACGCATATGAAGGTCCATGGGGAAGATGGAAGTTTGACCTTTAAATGCCCATGCTATTGCAATCTTTTCTTTGCCAGCAAAGAATTAGCTACTGAACATGCTCATCAGCAGCACAAGGAACTGCTCTATTGCGAGAAATGCGATAAATATATGACCGGACACGATAGTCTCAAGAATCATGAAAAGAATTTCCACTCCAAAAAGGAGCCAAGAAACTTGCCTAGGAATTTAATATGCGATAAATGTGGGAAGAAATTTAGCGGCCGCACTTCTCTCTCAGATCATGTGCGTTCGGATTGCGGGCGATTGCCTCTATATCAGTGTTCCGAATGCGGCAAACGTTTATCTACTGCTGGTATACTAAAAACCCACATGTTGCTTCACCAAGCAGAGACGCCGTATCAGTGCGATAAATGTGGCAAAACGTTCAAAGTCAAAGCACAATATAAATCGCATCTAAAGACGCGACACACCGACTACAAACCCTATAAATGCCATCTCTGTCCCAAGGAGTATCCCTATCGGGAGAGTCTGCTCACTCACATGACTGTCCATACGGGCATAAAGCGATTCCTTTGCAATAATTGCGGCAAGCGATTTACATGCATCTCCAATCTGCAGGCACATCGGAAAGTTCATGCCGATACTTGTGGTCAGTTGCCCCTCAATGCCAAAGCCACCCAATATATGGGTGTGCAGAGAGGTAAATTGTTGATGGGCGCCAAGCCAGAAGCTGGTATGGAATATGAAGAAACCAAGACTTTGATTGCACAGGAAGTGATTGATCGGGATATGCCAATGGCTCAGGAATTGAATTTTCCCTCGGATGGATCAACACCATTGGCGACAGTTCCCCTAAATTATGCCTCATCGCATCTGGTGCAGCCCATTGTGTTTCAAACAATGCAAGCCAAAGTCAGGCGAGAGGATTAG
- Protein Sequence
- MSNNVAKMLVEITTDGIPKLHCPVCNKALVSLAGYVKHVKKHEPPGGFQCRYCEVCYCHEDLLQDHVKAEHHDVAASQDGERKTYVCNKCGAEYKYLESYKRHCNKCGPNKRTTKSNEKTEEDSPSAGSSNSVRQVECKFCSTRFSCSSNLIKHQRSRPDTCGQEIYQANRKSSIDMENTDGSNCKKKKPAKQRRGRKIEPSTSDQEFISESPPDTDSDDDIPLASRRKPHIQTAIQAQALKQEDGLSDSTEECPDFDPANSDNEQDVIQFLPLPAPAMEVKEEAVDEDGDFDYPDASLFVKAESAADIFSNEKDKLLDVLLSTDEGDGLKPFESLKVEHAGGGGILDEIATVPLTEHLETELIEEDVLDVRVDKTKRAGRAPKNNQNEKPKRKYRKRNTAKSPSSDEDDEMNSSPTPTKRVSKISKKELKERLKMMNKVEKSWKCPHCVKIYHIRKPYEKHLRDDHKLNEDDIKDIFKDVDTNAKLDEEVFKCKICSKIYLVEKRLETHMKVHGEDGSLTFKCPCYCNLFFASKELATEHAHQQHKELLYCEKCDKYMTGHDSLKNHEKNFHSKKEPRNLPRNLICDKCGKKFSGRTSLSDHVRSDCGRLPLYQCSECGKRLSTAGILKTHMLLHQAETPYQCDKCGKTFKVKAQYKSHLKTRHTDYKPYKCHLCPKEYPYRESLLTHMTVHTGIKRFLCNNCGKRFTCISNLQAHRKVHADTCGQLPLNAKATQYMGVQRGKLLMGAKPEAGMEYEETKTLIAQEVIDRDMPMAQELNFPSDGSTPLATVPLNYASSHLVQPIVFQTMQAKVRRED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00483937;
- 90% Identity
- iTF_00618627; iTF_00555299; iTF_00503467; iTF_00523887; iTF_00604314; iTF_00571388;
- 80% Identity
- -