Dtro000104.1
Basic Information
- Insect
- Drosophila tropicalis
- Gene Symbol
- -
- Assembly
- GCA_018151085.1
- Location
- JAECWH010000446.1:277624-280197[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.012 0.93 10.1 3.7 3 23 292 312 290 312 0.97 2 12 0.0015 0.12 13.0 0.7 1 23 318 343 318 343 0.92 3 12 0.00093 0.072 13.6 0.6 1 23 350 375 350 375 0.96 4 12 0.00026 0.02 15.4 2.2 1 23 387 409 387 409 0.97 5 12 1.9e-06 0.00014 22.1 0.1 1 23 416 438 416 438 0.98 6 12 0.012 0.92 10.1 0.2 1 23 444 466 444 466 0.97 7 12 0.063 4.9 7.9 3.0 1 23 472 495 472 495 0.97 8 12 0.01 0.77 10.4 4.4 1 23 501 523 501 523 0.96 9 12 0.29 22 5.8 4.9 2 23 530 551 529 551 0.94 10 12 0.00011 0.0086 16.5 0.2 1 23 660 683 660 683 0.95 11 12 0.096 7.4 7.3 1.3 1 21 689 708 689 711 0.75 12 12 1.5e-07 1.2e-05 25.5 3.0 1 23 717 739 717 739 0.98
Sequence Information
- Coding Sequence
- ATGGATGTGTCCGGAACATATTCGATCCACTCGATGTGTCGGATATGCTTGAAACACTTGCAGAACGATGCCGCCTACGATTTGTATTTGGTGCCCGGATTGGCCAAGAAGCTTTGCTTCTGCACCTCCCTGTCTATCGAACAAAACGACGGCTTTCCCAAGAATCTTTGCACGAATTGCTACACGAAACTCAACGATTTGCATGATTTCCAAAAGTTGTGCGTGGATTCGGTGCAGAAATTTCAAGACATGGTGGCCAGTAATACGTTTAATTTCGATGTACTCGATCCCAGTATGGCCGGGGGAGCGGGCGGCGGTGTCGATGAGGAGGATCATGTTAATTTTGATCCATTGATTAATCACAAAATGGAATTGATTGAAAACGAGGAGGATGTCTTCAAAATGCTCGAAGATGTTGACAAAGAGGCCGAAGAGGTTGAGAAGGAAGTGGTCAAACTTGATAAGGAGGAAACAGCAGAAGACTTCGGCGGTAGTGGTGGCGGTGGTGGTGGCATGGGTGACGATGATGCATATTCCATGGAGAGCGGAAATGATAACGACAGAGATTTAGATTTTGAACCCAATAGCAGTGATGACGATATGCCGCTGGCCCAGAGGGTACGTGGAGCAGGAGCCGGAGGTCACGCAGCTACTACCAGTCGTCGTAAAGGACGCTCCAAACCAGCACCAGCACCCAAGCAGCCCAAGAAAAAGAAAAAGCCAATAGAAGAAGATGAGGAGATGTTGAGCGATGATGATGAATTTACTACTGATACGGATTCATCCGATACCGAAGGCGGCACCTCCAAGGGGGGCAAACCCAAGCGCAAGAGGATACCAGCCGACGAGAGGCATTTGCATCGCATCATCGATTGTCACATTTGTCATCAGAAGTTCAAAAAAGCCATTCGATATGAGGAGCACATGAAATATCACAATGACCTTTTGCCCTTCCAGTGCAAGGTGGAGACATGCAAGAAGGGATTCACCACGGCAAATGGTTTGCGCATTCATGTGGATCATGCCCATACAGAATTATCGGAGGTGCATTCCTGCCCAGCCGACGGATGTGGCAAGACCTTCCCACGTGTTCGTCTCTTGACCTTCCATATGAAGAAGGTGCATAATATATCAAAAGCAGCGGCACCATTGCGCGACTTTCCGTGCACCGAATGCGATACAGTATTCCGTTGTCCCACGGCACTCAAGAAGCACATGTATAAGCACACCGGCGAGGAGCTACCTTATCCATGTAATATTTGCGGCAAGCGTTTTGTCATCAATTCGGCTCTACGTGATCATCTAATGCGTCACGCTGGCATCAAGAATCATGTGTGTCCGTACTGTGGGGTTGGTAAGACTACTCGCCAGGAATGGAATGCCCACATTCTGACCCACACCAAGGAGAAGAAATTCAAATGCCGGCAATGCGATCATGCCTCGCACAATAAACAGGCACTCAGCAATCACGTCAAGGTTGTCCATGAGAAACGCAAGGATTTCGCTTGTCAATATTGTGGCAAGACGTTTGGCAAGTCGCATGCCTGCAAAGTCCATGAGCGCAGTCATACGGGTGAGAAGTGCTGCGAGTGCAAGATCTGTGGCAAAATCTTCCTATGCGATAAGAGTTTGACCAAACATTTGAAGACCCATGAGAAGAAGGATCTACCGCCAGTGGCACCGCCGCCTCCGGCAAATGTTGCTGCTGCCGTGGCCGCCGCCTCCACAAATCAAAATCAAATGCTTAACATTCCAGGGCAAGATCTAATGTCTCTACAAGATGATCCGAATGCAGTGGGAACAGTGGGAGGAGCTGTTGCTCCCCCATTAGCGGCGGTGGTTCAGAAACCGAAAAATTCAAGACGAGTCCAACGCGTGGATATATCCCAATTGGCTGGCACATCAGTAAATCCTATACCCTCTGTATCAGTGCCCTCGTGGTCGCCGCAAGTCAATTTCACCAAGAAGGAGGGTCAACACATCTGTCCTGGCTGCGGGCGTGGCTTCAATAATATTGGCAACATGAAACTCCATTATAAAATCATCCATGAGAAGGTCAAAGATTTTGCCTGTCGTTTTTGCCCCAAACGTTTCTCCAAGGCCCAAATCTTGCGTCATCACGAATGGATTCACACTGGTGAGAAACCATTCGAATGTAAAATCTGTGGCAAGCATTTCCGTCAAGAGACAGCCCTCAAGAAGCACATTAAAACGCATGAGAAACCCAATCGGAGGCATGTCCCTGAGCGTAGTGCACCGGTGCAGTATCATAAGTTGGAACCACCGCTAGATGGTTTCATGGAGCATCGCAACTATGATCAATTTCAGGATCCGGCTGCAGAGCGAGCGGCGGCCACTGCCGAATTGCTGGCTCAACAGCTCGAGGAAAATGAAACGAAGCGAAAGGCAGAAATCGAAAGACGTAAAATTCAAGAGGCTGCCCAGGAGCAGCTGCAGAAGCTGCAAAAGCAACAGGAAATTGTCAAGGCCACCACCTCATATGATGGCTATTATGCCCAGAAGGCCCAAGCTGAGGGCACCAGTGTCGATGCCCTCAAAATTGATCATGTCTAA
- Protein Sequence
- MDVSGTYSIHSMCRICLKHLQNDAAYDLYLVPGLAKKLCFCTSLSIEQNDGFPKNLCTNCYTKLNDLHDFQKLCVDSVQKFQDMVASNTFNFDVLDPSMAGGAGGGVDEEDHVNFDPLINHKMELIENEEDVFKMLEDVDKEAEEVEKEVVKLDKEETAEDFGGSGGGGGGMGDDDAYSMESGNDNDRDLDFEPNSSDDDMPLAQRVRGAGAGGHAATTSRRKGRSKPAPAPKQPKKKKKPIEEDEEMLSDDDEFTTDTDSSDTEGGTSKGGKPKRKRIPADERHLHRIIDCHICHQKFKKAIRYEEHMKYHNDLLPFQCKVETCKKGFTTANGLRIHVDHAHTELSEVHSCPADGCGKTFPRVRLLTFHMKKVHNISKAAAPLRDFPCTECDTVFRCPTALKKHMYKHTGEELPYPCNICGKRFVINSALRDHLMRHAGIKNHVCPYCGVGKTTRQEWNAHILTHTKEKKFKCRQCDHASHNKQALSNHVKVVHEKRKDFACQYCGKTFGKSHACKVHERSHTGEKCCECKICGKIFLCDKSLTKHLKTHEKKDLPPVAPPPPANVAAAVAAASTNQNQMLNIPGQDLMSLQDDPNAVGTVGGAVAPPLAAVVQKPKNSRRVQRVDISQLAGTSVNPIPSVSVPSWSPQVNFTKKEGQHICPGCGRGFNNIGNMKLHYKIIHEKVKDFACRFCPKRFSKAQILRHHEWIHTGEKPFECKICGKHFRQETALKKHIKTHEKPNRRHVPERSAPVQYHKLEPPLDGFMEHRNYDQFQDPAAERAAATAELLAQQLEENETKRKAEIERRKIQEAAQEQLQKLQKQQEIVKATTSYDGYYAQKAQAEGTSVDALKIDHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00600509;
- 90% Identity
- iTF_00523882;
- 80% Identity
- -