Basic Information

Insect: Drosophila tropicalis
Gene Symbol: salm
Assembly: GCA_018151085.1
Location: JAECWH010000815.1:12306473-12310932[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 3.7e-06 0.00029 21.2 0.9 1 23 440 462 440 462 0.98

2 7 7.4e-06 0.00057 20.2 2.1 1 23 468 490 468 490 0.98

3 7 0.012 0.96 10.1 1.5 2 23 858 879 857 879 0.98

4 7 5.3e-08 4.1e-06 27.0 0.5 1 23 885 907 885 907 0.98

5 7 0.00016 0.013 16.0 2.3 1 23 917 939 917 939 0.98

6 7 0.021 1.7 9.3 2.9 2 23 1197 1218 1196 1218 0.97

7 7 2.1e-08 1.6e-06 28.3 1.3 1 23 1224 1246 1224 1246 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	3.7e-06	0.00029	21.2	0.9	1	23	440	462	440	462	0.98
2	7	7.4e-06	0.00057	20.2	2.1	1	23	468	490	468	490	0.98
3	7	0.012	0.96	10.1	1.5	2	23	858	879	857	879	0.98
4	7	5.3e-08	4.1e-06	27.0	0.5	1	23	885	907	885	907	0.98
5	7	0.00016	0.013	16.0	2.3	1	23	917	939	917	939	0.98
6	7	0.021	1.7	9.3	2.9	2	23	1197	1218	1196	1218	0.97
7	7	2.1e-08	1.6e-06	28.3	1.3	1	23	1224	1246	1224	1246	0.99

Sequence Information

Coding Sequence: ATGTGTTTTTCAGACATAGCCAGTTCTGATCAGGAAGAGAATGGCGCTTGCTCGCCAGTGACAACAGCCACATCTAATGCCAGTCCCAGTCGTAGAAGTCCGCAGCGTCACTTGGACTTGGAGATGTCATCTAACAATACAGTGAAAAGTAAAGAAGAAGGCGAAGATACTAAATTAGAGACTAAACAATTACCAGAACAGTTTGTCGAAGATAATGCCAATCTGGCGGAGGAGGAGGGGACTATTGAGGATAATAATAACAAAGTTTCGGTCATGACAAAGCCTGCTGTTATAACCAGCATGGAGGAGGAGTCCACCAGACCGAATACACCCAAGGACAGTCATGAAGAAGCTAAGGAAAAGAATGTGGAAGTGGACATAGAAATGTCTGAGCAGGATCAAGAAGAGCCAACTGCTCCATTGAATGCTTCAGAAAAATCAGAGATCACCACATCCACCACACCGACTCCTACATCAGTTGCGAACGCAGCAGCTGCAGCGGCTGCAGCAGCAGCAGCCTCGCCTGGAGCTGCGCCTGTCACTTTGGAGGCCATTCAAAACATGCAAATGGCCATAGCCCAATTCGCGGCCAAGACCATTGCAAACGGCTCCACCGGTGCCGATAATGAGACGGCCATGAAGCAGTTGGCCTTTCTCCAGCAGACGCTGTTCAATCTGCAACAGCAACAACTATTCCAGATTCAATTGATCCAACAGTTGCAGTCTCAACTGGCTTTGAATCAACAGACAAAACAGAGCGACGAAGAGGAGGAGGACGAGGAGCGGGAAGTAGATGAAGAAGAAGAAAGAGAAGAACAGGAGACAGACACATATGAAGAAGAGGAGCGCATAGCCGACATGGAGCTACGCCAAAAAGCAGAGGCTCGCATGGCCGAGGCTAAGGCTCGTCAGCATTTGATCAATGCAGGAGTTCCCCTGAGGGATGGATCTCCTGTAGAGGGAGAGTCCTTAAAAAGACGAAGGCAGGAGACAGAGGCAGAAGAAGGGGAGGAGGAGCGTAAAAATGGAGCGCAACAGCCTAGTCGACGAATTGAATCCACTCAGGAGACTTTAGCTAAGCTCAAGGATATGGAGAACATGCCGTTACCATTTGGCTCCGACTTGGCTTCAAGTATCATCACCAATCATGATGATCACTTAGCCGCTCCAGCGAATTCCCTCGATCTTTTGCAGAAGCGCGCCCAAGAGGTTCTAGATTCCGCCTCCCAAGGTATCCTGGCCAACAACATGGCGGATGATTTTGCTTTTGGAGACAAAAACGGGGATGGTAAGAATAGAAATGAGCCCTTCTTTAAGCACCGATGCCGCTATTGCGGCAAAGTGTTTGGCTCCGACTCGGCCCTGCAGATCCATATACGTTCCCACACCGGAGAACGACCCTTTAAGTGCAATGTTTGCGGCAGTCGATTCACCACCAAAGGCAATTTGAAAGTGCACTTCCAGAGACATGCGCAGAAGTTTCCGCATGTTCCTATGAATGCTACTCCCATACCCGAGCATATGGACAAATTTCATCCGCCCCTGCTCGACCAGATGTCCCCAGATAGCTCACCCACCCAATCACCCGCCCCCAGTTCAGCCAGTACTGCACCACAGCAGCAGCAGTCCTTGCCAGTTAGCTATTCGGCAACGCCTGCTTTTCCCGGACTGTATCGCTCACCTATGGATATATTAAAGTCGTTGGGTGGCAATCCTGCTAATTTGCCTCATCCCTTTTTCCCCCAAATGACGCAACTGAAACCTAGCCAGGAGATGCCTACTGATTTGAGTAAGTCGTCGGGTCCCAGTTCACCGAGAGACGATGATGAGGATATGGTTATTCCAGTGAAAACGGAAATAATCGAGGAAAAGGAAACCAGTGAGCAGCAAAGGGAAGAAGACGAAGCGGCTTCAATAGCAGCAGCAGCGTCTGGAAATGATTCCGAGTTGGAGCCAGAGCCTCTGCCGTTAGAGGTAAGAATCAAAGAGGAACGTGTAGAGGACGATAGCGAAAATGATCGGGAATTAGATCGTAGAGATTCAACACCTCCTCCTGCTCCTAAGTCGCCCAGTCAGCGACCTCTTCAAAATCCTCATCACCACCTGCATCATCCCCATCAACTGCCTCCAGCATATCCGCCAGTGATGCAACCAATACAACCTCCCGCCATTATAAATCCACAACCCTCGCCAAAATCTCAAATGCATTTGGATCACTTGCCTACGCCGGGACAGTTGCCTCCAACTATGCCGCCACACCGTGAGGATTTTTTCAACGAAAGGTTTCCTCTCAATTTCACCAGCGCCGTCGGAAGTAAAACTCTCTCTCCCGAACATCATTCCCCTATTCGATCGCCAGCCTCAGGACCACCGCCAATGGGACCCCATGGTGGTCACGCACACATTCCACGCTCACCCTTCTTTAATCCAATCAAACATGAAATGGCAGCTCTTCTGCCGCGTCCGCATAGCAATGACAACTCCTGGGAGAATTTCATTGAAGTCTCCAACACATCGGAAACAATGAAGCTTAAGGAACTGATGAAAAACAAGAAGATCAGTGATCCCAACCAGTGTGTGGTATGCGATCGGGTTCTGTCATGCAAAAGCGCCCTCCAAATGCATTATCGTACTCATACCGGAGAACGGCCATTCAAATGCCGGATCTGCGGACGAGCCTTTACCACCAAGGGCAACCTGAAGACACATATGGCGGTGCACAAGATTCGTCCTCCCATGAGGAACTTTCACCAGTGTCCCGTGTGCCACAAGAAGTATTCGAATGCCCTGGTATTACAACAACATATTCGTCTCCATACGGGAGAACCCACCGATTTAACGCCAGAGCAGATACAGGCGGCTGAGATCCGAGATCCACCGCCATCCATGATGCCGGGACACTTTATGAATCCATTTGCAGCGGCCGCATTCCACTTTGGCGCCATGCCAGGTGGCAGTCCAGGAAGTGCTGCTGCAGGTCAAGTACATCCTGGTGGCCACATGGCCGCTCATCATAACGGAGTCGCTTTAGGCTCGGAGTCCTCTCAGGGTGATTTGGATGACAATATGGATTGTGGAGATGACTTCGACGACGATGTGTCATCGGAGCATTTGTCTAACAGCCACTTGGCAGAGGAAGGTGGAGAACGTCCACGTTCCGGGGACGATTTTAAGTCTCTGCTCTTTGAGCAAAAGCTACGCATAGATGCTAGCGGAGTGGTAAACACCCAAGCCAATTCTGTGGGTTCCACTTCGGCACCCAACAGTCCCACATCGCAGCCAAACCCTAGCTTATCGCCAGCACGCTCGGATGTATCACAGGGCGCCCTGGATCTAACACCACGGGCTGCTGCCGCCCCACCTTCAACCAACTTATCCACCTCTCCGCCTTCTAGTGACCGTAAAGACAAAACCCAATCGCCAGTGTCCCTCCCTATGCATCCAGCCGAATCCCGAAGAAGCCCTAGTGCTAGCGCTGCTCCTCTACCTCCTTCTAATATGTGCAATGCTATGAATCAGATTGCCCAGTCGGTGATGCCAGCGGCTCCTTTCAATCCGTTGGCCTTGAGTGGTGTTCGCGGCAGCACCACGTGCGGCATCTGCTATAAGACATTCCCATGCCATTCGGCGCTCGAGATTCACTACAGGAGCCACACCAAGGAACGACCCTTCAAGTGCAATATATGTGATCGCGGTTTTACCACCAAGGGCAATCTGAAACAGCATATGTTAACCCACAAAATTCGAGATATGGAACAGGAAACTTTTAGAAATCGCGCAATGAATGACTCGAGCGATGAACGCGATTAG
Protein Sequence: MCFSDIASSDQEENGACSPVTTATSNASPSRRSPQRHLDLEMSSNNTVKSKEEGEDTKLETKQLPEQFVEDNANLAEEEGTIEDNNNKVSVMTKPAVITSMEEESTRPNTPKDSHEEAKEKNVEVDIEMSEQDQEEPTAPLNASEKSEITTSTTPTPTSVANAAAAAAAAAAASPGAAPVTLEAIQNMQMAIAQFAAKTIANGSTGADNETAMKQLAFLQQTLFNLQQQQLFQIQLIQQLQSQLALNQQTKQSDEEEEDEEREVDEEEEREEQETDTYEEEERIADMELRQKAEARMAEAKARQHLINAGVPLRDGSPVEGESLKRRRQETEAEEGEEERKNGAQQPSRRIESTQETLAKLKDMENMPLPFGSDLASSIITNHDDHLAAPANSLDLLQKRAQEVLDSASQGILANNMADDFAFGDKNGDGKNRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHAQKFPHVPMNATPIPEHMDKFHPPLLDQMSPDSSPTQSPAPSSASTAPQQQQSLPVSYSATPAFPGLYRSPMDILKSLGGNPANLPHPFFPQMTQLKPSQEMPTDLSKSSGPSSPRDDDEDMVIPVKTEIIEEKETSEQQREEDEAASIAAAASGNDSELEPEPLPLEVRIKEERVEDDSENDRELDRRDSTPPPAPKSPSQRPLQNPHHHLHHPHQLPPAYPPVMQPIQPPAIINPQPSPKSQMHLDHLPTPGQLPPTMPPHREDFFNERFPLNFTSAVGSKTLSPEHHSPIRSPASGPPPMGPHGGHAHIPRSPFFNPIKHEMAALLPRPHSNDNSWENFIEVSNTSETMKLKELMKNKKISDPNQCVVCDRVLSCKSALQMHYRTHTGERPFKCRICGRAFTTKGNLKTHMAVHKIRPPMRNFHQCPVCHKKYSNALVLQQHIRLHTGEPTDLTPEQIQAAEIRDPPPSMMPGHFMNPFAAAAFHFGAMPGGSPGSAAAGQVHPGGHMAAHHNGVALGSESSQGDLDDNMDCGDDFDDDVSSEHLSNSHLAEEGGERPRSGDDFKSLLFEQKLRIDASGVVNTQANSVGSTSAPNSPTSQPNPSLSPARSDVSQGALDLTPRAAAAPPSTNLSTSPPSSDRKDKTQSPVSLPMHPAESRRSPSASAAPLPPSNMCNAMNQIAQSVMPAAPFNPLALSGVRGSTTCGICYKTFPCHSALEIHYRSHTKERPFKCNICDRGFTTKGNLKQHMLTHKIRDMEQETFRNRAMNDSSDERD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00483911;
90% Identity: iTF_00523919;
80% Identity: -