Dtro005806.1
Basic Information
- Insect
- Drosophila tropicalis
- Gene Symbol
- bab1
- Assembly
- GCA_018151085.1
- Location
- JAECWH010000426.1:6684046-6687341[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 9.8e-18 1.8e-14 53.2 0.0 1 43 56 99 56 101 0.95 2 3 5.2 9.5e+03 -3.5 0.2 7 18 183 193 182 193 0.81 3 3 0.49 9.1e+02 -0.3 0.2 15 23 218 226 216 233 0.83
Sequence Information
- Coding Sequence
- ATGAGCCAAACACTGACGGACCGCAACGAGACTTATTGCATGTCAGTGGCCCATAAAAATAGCTATCAATATCAATTGCAATCGATGTGGCAAAAATGCTGGAACACCAATCAAAATCTAATGCATCATATGCGTTTCCGTGAGCGTGGACCATTGAAATCGTGGCGTCCCGAAACGATGGCCGAGGCCATCTTTAGTGTCCTCAAGGAGGGACTCTCACTGTCGCAGGCGGCACGCAAATATGATATACCATATCCCACCTTTGTTCTATATGCGAATCGTGTCCATAATATGCTTGGTCCATCCATCGACGGAGGTCCCGATCTGAGGCCCAAGGGCCGTGGCCGGCCACAGCGCATTCTGCTCGGCATTTGGCCTGACGAGCATATCAAGGGTGTGATCAAGACTGTGGTGTTCCGTGATGCCACCAAGGAATTGAAGGATGACAGCACTCTGGGATTGGGTGGTCATATGCCGCCCTATGGTCGTCATTCGCCCGTATTTCCCTTGCAGGACATGAGCTTAAGCTATCCGGGAGCTGCTAGTGCTGCAGCTCTGGCTTGTTCCAATGGCATGGGCGGCGGCGGAGCTGGAGTTGGTGTGGGAGTGGGAGGCGGTCCGTCGGTTGTCGGCGGACCGGGGCCGGATCAGGGCCAAATGTCGCAGGAGACGGCAGCTGCTGTCGCCGCTGTGGCCCACAATATACGCCAGCAGATGCAGATGGCCGCTGCAGTGCAGCAGCAGCATCAGCATGGGGAAGCGGGACCGCCACCAGGGCTCTTCAATCTGCCACCACATCTGGCTGGCAGTGGTCCGGTGTTGGGTAGAGGGAGCAGCATATCGCCAGCACTGAGCAGTGGCTCGGGCCCCAGGCATGCGCCACCCTCATCGCCCTGCGGTCCCGCCGGTCTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTCCTCCTCCTCGTCCTCCCAGCAGCAACAGTTCCACCAGCAACTGGACAAATCCAAGACCAAAGGTAGTCCCATGCGAAGTGAAACGCCTCGCCTCCATTCACCCCTAACCGACCTGGGTCTCGAGATGAGCAGCTACAAAAGGGATTATTCGCCCTCGCGTCTATTCGCCGACGACCTGGCCGAGTTGGTTGGAGCTGGCGGCGGAGGGGCAGCCATTTCAACTTCCACATAA
- Protein Sequence
- MSQTLTDRNETYCMSVAHKNSYQYQLQSMWQKCWNTNQNLMHHMRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDATKELKDDSTLGLGGHMPPYGRHSPVFPLQDMSLSYPGAASAAALACSNGMGGGGAGVGVGVGGGPSVVGGPGPDQGQMSQETAAAVAAVAHNIRQQMQMAAAVQQQHQHGEAGPPPGLFNLPPHLAGSGPVLGRGSSISPALSSGSGPRHAPPSSPCGPAGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSSSSQQQQFHQQLDKSKTKGSPMRSETPRLHSPLTDLGLEMSSYKRDYSPSRLFADDLAELVGAGGGGAAISTST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -