Basic Information

Insect: Drosophila tristis
Gene Symbol: salm
Assembly: GCA_018150885.1
Location: JAECWT010000039.1:820800-829153[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 2.1e-06 0.00014 21.9 1.7 1 23 362 384 362 384 0.98

2 8 2.9e-05 0.0019 18.3 3.5 1 23 390 412 390 412 0.98

3 8 2 1.3e+02 3.1 2.5 5 23 658 676 655 676 0.84

4 8 3e-08 2e-06 27.7 0.2 1 23 682 704 682 704 0.98

5 8 0.00091 0.061 13.6 0.9 1 23 714 736 714 736 0.98

6 8 0.046 3 8.2 0.1 2 23 954 976 954 976 0.96

7 8 9.8e-06 0.00066 19.8 5.0 1 23 1129 1151 1129 1151 0.96

8 8 7.8e-08 5.2e-06 26.4 0.7 1 23 1157 1179 1157 1179 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	2.1e-06	0.00014	21.9	1.7	1	23	362	384	362	384	0.98
2	8	2.9e-05	0.0019	18.3	3.5	1	23	390	412	390	412	0.98
3	8	2	1.3e+02	3.1	2.5	5	23	658	676	655	676	0.84
4	8	3e-08	2e-06	27.7	0.2	1	23	682	704	682	704	0.98
5	8	0.00091	0.061	13.6	0.9	1	23	714	736	714	736	0.98
6	8	0.046	3	8.2	0.1	2	23	954	976	954	976	0.96
7	8	9.8e-06	0.00066	19.8	5.0	1	23	1129	1151	1129	1151	0.96
8	8	7.8e-08	5.2e-06	26.4	0.7	1	23	1157	1179	1157	1179	0.98

Sequence Information

Coding Sequence: ATGTGTTCCATATTTCGCAATCGCATCAATTATCGGGGCACAGGCACCAGGACCTCGGGCTCAGCCGCCGGCGACAGGGATAGGGATAGGGAGAACCTCCTGGCCAAGGAGCTGGATGCGGACAGCAACAACAATGGCGGCATCGAGGCGGCGACTCCCCCCGATGTCGAGCCCGAGACCGAGCCCGAGACGGAGCTGGAGCCCACCGAGCGGGATGCAGAGTTGGAGGACGGGGACGGGGCCTCGGGGTCGGCGTCGCCGGAGCCGGAGAACAGCAACGAGGCGCTCGATCTGTCGGTGATCTCGGCCGGCAGTCGACTGCCCACCAGCGGTCACGTGGCCCTGGAAGCTTTACAACATACCAAAGTGGCGGTGGCCCAGTTCGCGGCCACCGCTCTGGCGGGCGCTGCGGCGGGCAACCAGCGGCCCGCCGACCTGGCCATGGTGCAGTCCACCATCTTCAATGTGCAGCGCCAGCACCTGATGCAGCTGCAGCTCATCCAGCACCTACAGAGTCAATTGAAGCGCGCCGAGGCAGCGGCCCTCGGCAGGCAGGCCGAGCAGCACGAGGAGGAGCAGCAGCCCGACGAGGAGGAGGATGAACAGGATCAGGATCAGGAACAGGAACGGGAGGAGGAGTCGCCAGAGCCCACCAGAGAGCAGCGGGCCAATGGCATGCGGCAGGAGCAGCACGAGGAGGAGAACGAGCTGCGGCGCGAGGAGAGTTCAAAGACTGAAAAGAGAGAGGAAAGCGAAAGGGAAATGGAAAGGGAAAGGGAGACAAGTCGGAGTCAGATGAAGGCCAAGAAGATGGACCCCTCGCCGGAGGCAGATCCTGGCGCTGGCGCCGCCGGCTCCGACTACCTGATGTGCGGCGACATCAGCTCGAGCCTGGCCTCGAGCATCATCACCAACCACGACCCGCCGCCGGCGCCCAACGAGCCCAACTGCCTGGAGATGCTGCAGCGGCGCACCGAGGAGGTGCTGGACTCGGCCTCCCAGAGCCTGCACGCCGCCCAGATGCAGGAGGAGTACTCGGAGTACGCCTCCAAGGAGGCGCAGAGCCGCGGCGAGATCTTCAAGCATCGCTGCAAGTACTGCGGCAAGATCTTCGGCAGCTACTCGGCCCTGCAGATCCACCTGCGGTCGCACACCGGCGAGCGGCCCTTCCACTGCAACGTCTGCGGCAGCAAGTTCACCACCAAGGGCAACCTCAAGGTGCACTACCAGCGGCACACGCAGATCTTTCCCCCCATGCTGATGCCGCCCGTGGTGGCCGCCGCCTCGAACGGCGGTGGCCAGCCCCCAGCCACGTCCGAGCAGTTTGCAGCGCTGAATCCCATACGCCTGCCCTTTGTGCCGCCTCCAGCACCGCCCAGCGGACAGGAGCCCAGTCCCCTGCAGCAGCTGGAGGAGATGGAGGAGAACCGCATGGAGCAGCAGCAGCAGCAGCAGCCACTGCAGGCAGAGGATCTGAGCAAGCCAGGACCAAAGGAGAAGGAAACCCTGAGGGAGAAAGAGAAGCAAAAGGAGAAGGAGAAGGAAAAGTCGCACTCGCCCGTAGAGCGGGCCAAGACGCCCAAAGAGGTGGCCCCAGAGCTGAGCAGACACCAGCCCGTCCCGGAGCCCGTGGCGGAGAAGCCAGAGAGGGAAACGGCCAAGCCGGTGGCGCCGCCGCGACGCAATGGCAGTGTGCGGAAGCGGCAGACGAGCAGCGCGGGCAGTCCGCCCAGCGAGGAGCGGGAGCGGGAGCGCGACCTGGCCGAGCACATGCACATCGCCAAGCTGGTGCGGCGCTCCTCGTCGACCAGTCGCGAGGCGCCCGGGGAGTACTCGCTGGCCCAGATGGAGCGCATCATCGACAAGTCGTGGGAGGATCTGATCGAGATCGACAAGACGTCGGAGACGTCGAAGCTGCAGCAGCTGGTGGACAACATCGAGAACAAGCTGACGGACCCGAACCAGTGCATCTTCTGCCAGAAGGTCATGTCCTGCCGCAGCTCCCTGCAGATGCACATCCGCACGCACACGGGCGAGCGGCCCTTCCGCTGCAAGATCTGCGGCCGGGCGTTCGCCACCAAGGGCAACCTGAAGGCCCACATGAGCATCCACAAGATCAAGCCGCCGATGCGCAGCCAGTTCAAGTGCCCCGTGTGCCACCAGAAGTTCTCCAACGGCATCATCCTGCAGCAGCACATTCGCATCCACACCATGGACGACGGCAGTGGCGGCGGGCAGCAGGCGCCGCCGCTCCAAGGCGACCCCGACAGGCTGGGCATCGAGGATCAGAACTCGAACAAGTCGCTGGGCACCTCGGACACCCTGGACTTCTCCACCACCATCTCGGACCACTCGGGCCAGCGCTCGGAGTCGTCGCAGGGCGGCGACTTTGACGAGTTCATGACCATGGACAGCACGGACGATTCCAGGGACAACTCCAGCGCCGCCACAGCCACGCCGCTTCCCTTGGACAGGGAGCGGGAGAGGGAGCGAGAGCGGGAGCGGGAGCGGGAGAGGCGGGCCCCCAATGATGGCTGCGATGAACGCTCCAGATCCGAGCTGGATCTGACTGGCGCAGGAGGACGCAGCGAGAGCGGCGAAATGCCAGCCATGGATCTCTCCTCGCCGTCGTCTGCCACGGCGCGACTCTTCAATGGAGCAGCAGGCGCTGGCGCTGGGGCTGGGGCTGGCCTGCCGCTGCTCGGCATGCCCATGCCCCCCAATCTGCTGCTGATGGCAGCGGCCCGCGAGGAGATGCACGCCCTGGGCCAGGCCCATGCCCATGCCCATGCCCATGCCAAGTTCCCCCTGCTGCCGTTCGGCCCGCTGGGATTTATGGGCCTGCATCCGCCCCCGAATGTGTGCAATCTGTGCTTCAAGATGCTGCCCAGCCTGGCCGCCTTGGAGAGCCATCTGCAGAGCGAACATGCCAAAGAAGTCGCCGGGCCACCGACCCACTCCCACAGAGCCCATTGCAACCCCGACGCTGGATCGCCCTACGGGGCCAAGCTCACTCTCAATCCAAATCTGTTCGCAAAGAAGCCGCCGGCGCCGCCACCGCCAGCAGCAGCAGCAGCATCGGCGGGCGACAAGTTGCCCAGCCCCAGTGTGTCCCATGGGCAGCCCCTGGAGGCGACGCCCATCAAAGAGGAGCCCGAGCAGGATCAGCTGCTGGGCGAAGAGGCTGCTGCCGGCGAGGGAGGGGCAGCAGGAGCAGCAGCAGGCGGTGGCAACTACCCACAGGACGCCATCGATGCCGAACAGTCGCTGATGAAGATGCAGTTGCATGCCCATCGGTTCCCGGCCAGTCCGCTGGACTTCCAGCAGGCTCTGATGTCCGCCGGTCCGCCCACATCCAGCCTGGATCCGCCCGTGAACAACAAGCACTTCTGCCACGTCTGCCGGCGCAACTTCAGCTCCAGCTCGGCGCTGCAGATCCACATGCGCACCCACACGGGCGACAAGCCTTTCCAGTGCAACGTCTGCCAGAAGGCATTCACCACCAAAGGAAATCTGAAGGTGCACATGGGCACCCATATGTGGACGAATCCCACGTCGCGTCGCGGTCGTCGCATGTCGCTGGAGCTGCCCATGCGTCCGGGGCCGGGGCCGGGTCCGGGTGCGGCACACGGTGGACCCACGGCCGAGCAGGAGTTCATGCAGCGCCGACCAGAGCTCTTTTTTCCCTACCTGCCGCCCTTTTTCAATGGACTGCCACCAAAGCCTGGTGAGCTGAGTCCCGGCGCCTTTGCCAACCTGCCGCCGCCGCCCTTCGCCAACGGTGGCAAGTATCCCTACCCGCCTGGACTGCTGGGCTTTCCCGGCTTCTTGGGTCAGCATCCCTACGCCATGGAGCGTGGCAGCAGCAGCAAATCGCCCACTCCCGAGCCGGCGCAGAGTCCTTCGCTGCGCGACGATGAGCTGGCCAGCAATATCTGGCATCCACTGAGTCGCATCAAGATGGAGAGCAATCAAAGCGAGGCAGTGGGCCACAGCCTGCACGAGCAGGAGGAGGGCGACGGGGAGGCAGGTGGCGGCGCGCTGGAGCCCGATGAGTCAGAGTCCCGCGATGCGGACAAGTAA
Protein Sequence: MCSIFRNRINYRGTGTRTSGSAAGDRDRDRENLLAKELDADSNNNGGIEAATPPDVEPETEPETELEPTERDAELEDGDGASGSASPEPENSNEALDLSVISAGSRLPTSGHVALEALQHTKVAVAQFAATALAGAAAGNQRPADLAMVQSTIFNVQRQHLMQLQLIQHLQSQLKRAEAAALGRQAEQHEEEQQPDEEEDEQDQDQEQEREEESPEPTREQRANGMRQEQHEEENELRREESSKTEKREESEREMERERETSRSQMKAKKMDPSPEADPGAGAAGSDYLMCGDISSSLASSIITNHDPPPAPNEPNCLEMLQRRTEEVLDSASQSLHAAQMQEEYSEYASKEAQSRGEIFKHRCKYCGKIFGSYSALQIHLRSHTGERPFHCNVCGSKFTTKGNLKVHYQRHTQIFPPMLMPPVVAAASNGGGQPPATSEQFAALNPIRLPFVPPPAPPSGQEPSPLQQLEEMEENRMEQQQQQQPLQAEDLSKPGPKEKETLREKEKQKEKEKEKSHSPVERAKTPKEVAPELSRHQPVPEPVAEKPERETAKPVAPPRRNGSVRKRQTSSAGSPPSEERERERDLAEHMHIAKLVRRSSSTSREAPGEYSLAQMERIIDKSWEDLIEIDKTSETSKLQQLVDNIENKLTDPNQCIFCQKVMSCRSSLQMHIRTHTGERPFRCKICGRAFATKGNLKAHMSIHKIKPPMRSQFKCPVCHQKFSNGIILQQHIRIHTMDDGSGGGQQAPPLQGDPDRLGIEDQNSNKSLGTSDTLDFSTTISDHSGQRSESSQGGDFDEFMTMDSTDDSRDNSSAATATPLPLDRERERERERERERERRAPNDGCDERSRSELDLTGAGGRSESGEMPAMDLSSPSSATARLFNGAAGAGAGAGAGLPLLGMPMPPNLLLMAAAREEMHALGQAHAHAHAHAKFPLLPFGPLGFMGLHPPPNVCNLCFKMLPSLAALESHLQSEHAKEVAGPPTHSHRAHCNPDAGSPYGAKLTLNPNLFAKKPPAPPPPAAAAASAGDKLPSPSVSHGQPLEATPIKEEPEQDQLLGEEAAAGEGGAAGAAAGGGNYPQDAIDAEQSLMKMQLHAHRFPASPLDFQQALMSAGPPTSSLDPPVNNKHFCHVCRRNFSSSSALQIHMRTHTGDKPFQCNVCQKAFTTKGNLKVHMGTHMWTNPTSRRGRRMSLELPMRPGPGPGPGAAHGGPTAEQEFMQRRPELFFPYLPPFFNGLPPKPGELSPGAFANLPPPPFANGGKYPYPPGLLGFPGFLGQHPYAMERGSSSKSPTPEPAQSPSLRDDELASNIWHPLSRIKMESNQSEAVGHSLHEQEEGDGEAGGGALEPDESESRDADK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00601222;
90% Identity: iTF_00474665;
80% Identity: -