Dtri009916.1
Basic Information
- Insect
- Drosophila tripunctata
- Gene Symbol
- -
- Assembly
- GCA_035047385.1
- Location
- JAWNPS010000231.1:1141485-1143671[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.014 0.95 10.1 7.1 1 23 205 227 205 227 0.98 2 12 0.0012 0.084 13.4 2.2 1 23 234 259 234 259 0.95 3 12 0.002 0.13 12.8 0.7 5 23 272 291 266 291 0.93 4 12 0.0049 0.33 11.6 3.8 1 23 299 321 299 321 0.95 5 12 0.00017 0.011 16.2 0.9 3 23 330 350 328 350 0.98 6 12 0.0013 0.085 13.4 1.0 1 23 356 378 356 378 0.98 7 12 0.25 17 6.2 6.9 1 23 384 407 384 407 0.96 8 12 0.036 2.4 8.8 4.9 1 23 413 435 413 435 0.95 9 12 0.00011 0.0073 16.8 2.1 1 23 441 463 441 463 0.99 10 12 0.00014 0.0094 16.4 0.1 2 23 553 575 552 575 0.94 11 12 0.0034 0.23 12.0 5.2 1 23 581 603 581 603 0.97 12 12 0.006 0.4 11.3 5.1 1 23 609 631 609 631 0.98
Sequence Information
- Coding Sequence
- atggaCGAGGATACACCGGGATTAATGCACACACTGTGCCGCACCTGTTTAACCCACTTGAAACCGGACGGAAGCTTTGATCTGTTCATGCTACCCGGACTGGCCAAGAAGCTGTGTGTCTGCACTTCGCTATCGGTGGAACAACAGGATGGATACCCTAGAAATTTGTGCAGTGTGTGCTATAATCGACTCAATGAGCTGCATGAGTTTCAGAAACAGTGCGTGGACTCGGTGCAAAAGTTCAAGGAGCTGGTATCGAGCAGTTGTTTTGTATTACGCACACTGCCCGAGGATTTGACGCCGGTGGAGGCAGAGCAGCATGATTTTGATCCACTGTTGAATACCAAGGTGGAAATTGAGAATGAGGAGGATGTGTTCAAAATGATAGAAGACGTGGACAAGGAGTccaaggaggaggaggaggaggaggagcagcacgAGGAGGAAGCGTTCAATGATAGCGACAGCGATTTCAacgaagagcagcagcaggacagCAGTGATACCGACGATGAGCTGCCGCTGTCACGTCTGCGTGCCACCAAGAGCAAGACCAAAAAGCCAGCGAAACGCAAACGGACACCAGCTGCCGAGAAGCATCTGCATCGGACACACGAGTGCCACATTTGCCAGCAGAAGTTCATCAAAGTGTCGTGCTATGAGGAGCACATGAAGCGTCACAGTGAACCGCCGCTGCCGTATCAGTGTGAGGCCAAGGAGTGCACCAGGGGATTCTCCTCCACCACAGGCCTCAAACATCACATGGAGCATGCGCATCCGGAGCTATGTCAGCTGCACACCTGCATAGTCGAAGGCTGCAACGAATCCTTTGCCCAGACACGCATGTTAACCAAGCATCTGAGGAGTGTGCACAACATTGATAAACCCATTATACATCCGTGTCCCAAGTGTGAGAAGAAATTCCGTTGCCCCATGGCGCTCAAGAAGCATATGTATGATCATACGGGTGAGGCATTACCATTCGGCTGCACTGTATGCCAGAAGAGGTTTAGGGTGAACACAGAGCTGCGGGATCATCTGTTGCGTCATGCGGGGATTAAGAAGTTTGTGTGCTTCCATTGCGGTGTGGGCAGGACAACCAAACAGGAGCTGGACAAGCATATGCTCATCCATACCACGGAGAAGAAGTTCAAGTGTGATCACTGCGATCACACGTCGCACAACAAACAGCGCATGAACAAACACATCAAGGCGGTGCACATGAAGATCCGGGACTTTGTTTGCCAATACTGTCCGAAGACTTTTGCCAGCTCCTGTGCCTGCAAGAATCACGAGAAGCTGCACACGGGCGATGATTGCTTTGAGTGCAAGATTTGCGGACGAAAGTTTCTGTTTGAGAGCAGACTAACGAAGCATTTGAGGACACATGCGAATCGCTCcagcaaagcagcagcggAGAGCGGCGGCGACGTCAAGCAGGAAAAGGatcagcaggagcagcagcagcagcagcaggagctgcAGTCCAAGCAGCCAGTGAAAGTACCTGATATCCCTGTTAAACCAAAGGATCCGCGTCGCATTGAAGTGGTGGATATGGCACAACTGGCAGGCACTTCGGTGAATCCCATACCATCGGTATCCGTGTCCTCGTGGTCACCCCAGGACGACTTTGCCAAGAACGAGGGACAGCTCAGTTGTACGGATTGTGGCAATAATTTCACCACCCTTGGCGGACTGAAGAGTCACATCAAAGCGGTGCACAACAAGATACGTGACTATGCCTGTCGCTTCTGTCCCAAGCGTTTCAGTAAAACCTACACACTGAAGCATCACGAGTACACGCATACGGGTGAGAAGCCCTACGAGTGTCATGTGTGCCAGCAACGCTATAGACACGATGCCACCTTCCGCAAGCATTTGGAATCCCACACCAGGCCACCCAAGGAACCCAAGGAGCCAAAGAGACCCAAACGCAAGGCACTGCATCCGCAGGAACCACGTGTCAAGCTCAATACGGAGCCACAAAAGAACTATGAGCAATATCAGGATCCGGATGCAGAGCGTGCGGCGGCCACAGCTCAATTGCTTGCCCAGCAGCTGGAGGAGAGTGAGGCGAGACGCAAGGCGGAGGAGAAGGCGCGAGAGATTCAAGAAGCGGCCTgtgagcaactgcagcaattgAAGCAACTGCCGGCTTCCTTTGACGGGGGCATCACGAAATGA
- Protein Sequence
- MDEDTPGLMHTLCRTCLTHLKPDGSFDLFMLPGLAKKLCVCTSLSVEQQDGYPRNLCSVCYNRLNELHEFQKQCVDSVQKFKELVSSSCFVLRTLPEDLTPVEAEQHDFDPLLNTKVEIENEEDVFKMIEDVDKESKEEEEEEEQHEEEAFNDSDSDFNEEQQQDSSDTDDELPLSRLRATKSKTKKPAKRKRTPAAEKHLHRTHECHICQQKFIKVSCYEEHMKRHSEPPLPYQCEAKECTRGFSSTTGLKHHMEHAHPELCQLHTCIVEGCNESFAQTRMLTKHLRSVHNIDKPIIHPCPKCEKKFRCPMALKKHMYDHTGEALPFGCTVCQKRFRVNTELRDHLLRHAGIKKFVCFHCGVGRTTKQELDKHMLIHTTEKKFKCDHCDHTSHNKQRMNKHIKAVHMKIRDFVCQYCPKTFASSCACKNHEKLHTGDDCFECKICGRKFLFESRLTKHLRTHANRSSKAAAESGGDVKQEKDQQEQQQQQQELQSKQPVKVPDIPVKPKDPRRIEVVDMAQLAGTSVNPIPSVSVSSWSPQDDFAKNEGQLSCTDCGNNFTTLGGLKSHIKAVHNKIRDYACRFCPKRFSKTYTLKHHEYTHTGEKPYECHVCQQRYRHDATFRKHLESHTRPPKEPKEPKRPKRKALHPQEPRVKLNTEPQKNYEQYQDPDAERAAATAQLLAQQLEESEARRKAEEKAREIQEAACEQLQQLKQLPASFDGGITK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -