Dtri014064.1
Basic Information
- Insect
- Drosophila tripunctata
- Gene Symbol
- RREB1
- Assembly
- GCA_035047385.1
- Location
- JAWNPS010000315.1:2902639-2909615[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.04 2.7 8.7 0.8 1 21 267 287 267 289 0.93 2 13 0.00037 0.025 15.1 0.2 1 23 299 321 299 321 0.98 3 13 9e-05 0.0061 17.0 7.3 1 23 327 349 327 349 0.98 4 13 0.66 45 4.8 2.4 2 20 590 608 590 610 0.93 5 13 0.55 37 5.1 0.1 1 23 773 795 773 795 0.97 6 13 1.4e-05 0.00093 19.6 0.7 1 23 805 827 805 827 0.99 7 13 0.00092 0.062 13.8 2.0 1 23 833 856 833 856 0.97 8 13 0.0033 0.22 12.1 2.0 1 23 1154 1177 1154 1177 0.95 9 13 9.6e-05 0.0065 16.9 0.3 2 23 1562 1583 1561 1583 0.97 10 13 0.16 11 6.8 6.3 1 23 1589 1612 1589 1612 0.97 11 13 5 3.4e+02 2.1 3.6 1 23 1737 1760 1737 1760 0.79 12 13 0.0094 0.63 10.7 0.5 3 23 1824 1844 1822 1844 0.96 13 13 0.0015 0.1 13.2 4.8 1 23 1850 1872 1850 1872 0.99
Sequence Information
- Coding Sequence
- ATGTTGGCcacacagcaacacacaaccacaacaacagcaactgctgcctcagtagcagcagcagcagcagcaaccacaaccaTTAcccagcacagcagcagcgctggCAGCATCGACATGGAACGCCAGCGTCGCGATTCAACGACATCAGAATCATCACTGGAACATTTGGACTTGGGCCGCACACCAAAGaagctcagcagcagcagcggcgcaCCGCAGCCAACGTCAACGCCGCAtgatacaacaacagcaacagcgtcGTCGCGCAAGCGCAAACTgcgccagcaacaacatcagcagcagcagcaacaacaacatttgctcTCTGACGAAGATGATGAACAGCAGTCGCtgtcacagcaacagcaacaacaacagctagaACAGTCTGCACAGCGACCGCGTCACAAGCAGCGACGcaatgccgctgctgctgctgcagccagCGCCAGCATCGTTGTCGACTACAGCGCCAGCGGCGATGCGAGTTCGCTGCGTAAGAAATTTCGTCTGAATCGCAGCAGCGTCGTTGgtaacggcaacggcaacggcagcgaACTTTCCGAATCGGGTTTCGTTGATGGCAGCGCACACAGCGGTTATTTgcttagcagcagcagcgctgctggcagcagcaatagcgcagtggttgctgccgctgccgctgccatggtagcagcacaacagcagcagcaggcggcgTCGTCAAGCAGTTCGGGTGGCTCATCGCCAAACGgtaatttatgtttatcgaGTGCCGAATCCGGTATTGGAGCCGGCGACGATCTCATGAAATACTTGTGTCCCATCTGTGAGGTCGTCTCGGCCACGCCCCACGAGTTCACCAATCACATACGCTGTCACAATTATGCCAACGGCGACACTGAGAATTTCACCTGTCGCATCTGCTCAAAGGTGCTCTCATCTGCCTCATCGTTGGACCGGCATGTGTTGGTGCACACGGGTGAGCGACCGTTCAATTGCCGTTATTGCCATTTGACATTCACAACGAACGGCAACATGCATCGTCATATGCGTACACACAAGCAACATCAGAcaacgcaacagcagcagcagcagcaacagcaatcgcagtcgcaacagcagcagcaatcactGTCACAgtcgcagcaacagcagctgccgcagtctcagcagcaacaacagcagttgtCGCGACGCCAGCAACTTGCGGCAAAAGCAATTGCTGCACAGCTCAGCGGCCGATCGGAGAGCTATGAAAGCGATGCAAGTTGCTCAACGGATGTGTCCAGTGCGCagagtcacagcagcagcaacaacagcaacagcaacaacagtcacCGCAGtcacagcagtagcagcagccatcgtagtcacaacaacaacaataacaacaatagcaaacttggtaacaacaacaatgtggaggtggagcaacatgttgccagcAAGCAGCGACATAAAatcaaacacaacaacaacaataacaatgttGTTGATAAGCAGCTGCAAGATGAGCTCGCTTCAGatgtggagcagcagcagcatcacgataatgatgatgatgatgatgatgttgacgatgatgatgtggcACAAGTGATAACATCCACGCCCGatgtggcaacactgttaGCCTCGGGCGGCACCACGCCCAGTCAATCACCCGCCCCCGCCgccatgttgctgctgttgagctgCCCAGCATGTGCAGCGGATGAATTTGAATCGTTGCCAGCGTTGTGCCAGCATCTGGATGATGAGCATGCCGATATACCCGCCAAGTGTCGCGAATGCGAGGTAATCTTTGCCAGCCATCGCCAATTGCAGCAGCACAGTTGTCGTGCCATCAATGGACTGCAAATGATGCCACTGCTTGGCGCCAGCTCCAGTCCCATACAcaagcaggagcagcaggatgaggatgaggatgaggatgaggaggcggagcagcagcggcagctggagcaggaagatgatgagcagcagcagcagcagcatcaattgAAACGTGATGATTTCTTTCAGCAGCTCTATCTCAAGGGCAAAGCAAATGTTGCTGCCGGCTCAACAACAAGTGCTGCTGCAACCGCTTCGCTGCCCTCACCCATCAAGCATGAGCTGACGGAACGTAATGGTCAGGATTTGGCCGATATACAGAGCATCCTCAACATGACCAGCTCCAGTTGTACGTCCAGTTTTCTGCGCAACTTTGAGCAATCGGTGAACACCCCCTGCTCCAGTCAATACAGTCTCGATGGGCGCGATGGCGATGAGGAGGCACAGGATGCATTCACCAATGAGTTCCGTCGCATGAAGCTACGCGGTGAATTCCCCTGCAAGCTCTGCATTGCGGTCTTTCCCAATTTGCGTGCCCTCAAGGGACACAATCGGGTGCATTTGGCATCCGTTGGCGCTGCCGGACCCTTTCGTTGCAACATGTGCCCCTATGCGGTGTGCGATAAAGCGGCTCTGGTGCGGCACATGCGCACCCATAACGGTGATCGGCCGTATGAGTGTGCCGTGTGCAATTATGCCTTCACCACCAAAGCGAATTGTGAACGACATTTGCGTAATCGTCATGGCAAAACGAGCCGGGATGAGGTGAAGCGTGCCATTGTCTATCATCCGGCGGAGGATGCCAGCTGTGAGGAGGGGGGCAAAAGCGGTGGTGCTGGAGGTGGCAGCGGTTCGCAGCAGCAACGTTTGCTCGATGCGGATCTGTCAGAGCTGAGCTATCGTTCGGTGTCACCACCAGTGGAGCCAGTCTCACAATTGAAGCACATGTTGCTGGCGGAgagcacagcaacagcagcagcaacagcagcggcagcagcagacgtTACAGCCGCCACAGCAGCTGTTAAATCGTCGGCGCCTTTAAAGATACAAGTCAAGAGTCTGGATCAGTTGGTGGATAAACCATTGGCACCTGCCTTGGATCTAAGCATGGATGTCTTGGATCTCAGCAAgaagccaacagcagcagcagcagcacacgacttgcagcagcaacaacagcagcagcagcagcaacgtgaGCAGGAACTGCAACGTGAGCGTGaattgctgcagcaacaacaacaacagcagcagcagcagcagcagctttttGGCGCCGGTGATGCTGCCACACAGTACATGCAACAGCTGTTTCGTAATCTCATGTTCCAGCAATCGCCAGCGTTTCCCTTCTTTGGCTTCatgccaccaacaacaacagcagcagcagccgccgccgccgccgctgccgcagCAGCTGAAAAGTGTTCACCAGCAAcggcagccgcagcagcagcagcagcaacaacagcagcagcaacactgccATTGCCGCcgggtgttggtgttggcgtgGGTGTTCCCGTGCCTGCTGCAGCAGCGGGCATTGCTGGTGGCCCCATCAAGATGGTCATTAAAAATGGCGTCCTAATGCCAAAGCAGAAGCAGCGACGCTATCGCACCGAACGTCCCTTTGCCTGTGAGCATTGCTCGGCTCGCTTTACGCTTCGCTCCAACATGGAGCGTCATGTGAAGCAGCAACATCCGCAGTTCTATGCACAGCGGCAGCGCAGCGGACATCATGTGATGCGCGGACGTGCTGCCAACTCGAAtagtgctgcagcagcagcggccgcagcagccgccgccgccgcagcagcagccatgTCGAATTTaagccagcagcaacatggtCATCATGGGCATCATGCACACATTTCGGATCAGGTGAAATATGCGATATTGGCGCAACAGTTGAAGGCGCGCAAAGATACCGACTTGTTGCAGCAGGCATTGGCgcacggcagcagcagtgttgcTGGCAATCCATTGTTGCACTTTAGCAGCGCCTACAAGCAGCatagccagcagcagcagcagcagcaacagcagctgcagcagagcaatggacagcagcagcagcagcagcagcataatgatgatgatgagcccAAATTGATCATTGATgaggatgacgatgatgatgtggatgatgtggatgatgatgatgagcatGAAGAGGAAGAACTGGaggatgatgaggatgaggaagaGCAGTTGGAGGAGTTGGATGAACAGgaggaacagcaacagcagcagcagcaacagcaacagctggagcagcagcagcaacagcagcaacagcagcaaccgtCAACGGAGCAACCGCAGCGCACTTCAACGCCCATTGAGGCGGCTAAAAAGGTGGCCGAAACCATCTTGGAGCAGGCCATCAAAGCGGGTAAATCCTTGGAGTTGGAAACCAAACCGAACaaaactgccacgcccactgtcACGCCACCCGTAACGCCCACTGTAGCCACCGCGCCGCCCACTGCCAGCAGCATGAAATCCATGATTGCCTCAGCCGAATCGGTTGCCAAATCCCTCAAAGAAGTCGCCAGTTCACCGTTCAAGGATGAATCTCAGGATCTGGTGCCGGTGGCCAAACTGGTTGACAATGCCACCAGCAATCAGATGTCCTTCAACAGCTACTTTCGTCCCAGCGATGTGGCCAATCATATGGAGCAATCCGATGAGGAGGGTTTAGTTGCCTCCGGCAGTGCCAGTGAGAGCAACAACTCTGGCACCGAAGACGTcaccagcggcagcagcagcagtggcagcaacaacaacggcagcggcagcaacgaTACCAAAAAGAAATCCGCCTACAGCTTGGCCCCCAACCGGGTGAGTTGTCCCTACTGCCAGCGCATGTTTCCCTGGAGCAGCAGTTTGAGGCGTCACATCCTGACGCACACCGGCCAGAAGCCCTTCAAGTGCTCCCACTGCCCACTGCTCTTCACCACCAAAAGCAACTGCGATCGTCATTTGTTGCGCAAGCACGGTAATGTGGAGAGCGCCATGTCGGTGTATGTGCCTGCCGAGGATGTGAGTGAACCGATTCCGGTGCCCAAGTCTGTCGAAGAAATTGAGCTGGAGGAGCAGCGCAGACGCAATGCGGAGCAGCAGTTGGAGCGCGAACGAGAGCGCGAACGGGAGCGCGAAAGGGAGCGCGAAAGAGAGCGCGAACGCGAAAGGGAGCAACAGCTGCGCCGACGCGAAAAGGAGCAGGAACGCGAAagggagcaacagcagcagctaataCAGCAGCTAGCGGCAGCGGCACAGCAaatggttgctgctgctgccaacaacagcagcagcaatgcacCCGGCAGTCCACTGGCCAACGAATTACAGGGTAACGAGCTACCCTACAAGTGTCACCTCTGCGAGTACTCGTTCGGCGAGCGTTTGCAGTGCTTGGAGCACATCAAGCAGCAGCATGCCCATGAATTCGcactgctgctggccaaaGGTGCCATTGAAACCGAAGAgcaattggcagcagcagcaacaacaacaccagttGTGcccacaccaacaacaacagccagcaATGTTGCCTCCGATGATGAAAACGGTCTGACATCACGTGCCATCAAATATCCGGATTATAGCAATCGCAAAGTGAtctgtgcattttgtgtgcGTCGCTTTTGGTCCACCGAAGATCTGCGTCGTCATATGCGTACACATTCCGGCGAACGGCCGTTTCAGTGCGAGATTTGTTTGCGCAAGTTTACGCTAAAGCACAGCATGTTGCGGCACATGAAGAAGCACAGTGGACGCAGTCACAATGCCTTGGATTTGGCTGGACAATCCGATTGCTCCGATGATGAGCAGTCTGCCACACCGCCCAGCACACCCACGCCCATGAGTATGCCACAGgcacacaataacaacaacaataacaacaacaacaaccacaattgccacaacaacaacaacaatagcaaacaaaGTTTACGTCTGCCCAAATTGCACGAGTTGCTGGACAAGGCAAATGAATGGCGTGTGAGTCGTTTGGGTGAACAAAAGGAGAACATTGCAGAGAgcgcaacaccaacagcagcagcagcagcaacaacagcagctgctgccgctgcagccgccgccgccgccaccgcagCAGCGGGTGGCGATCTAATTGGAAATTTGCTGGGCATCAGCGATCAAGGTATACTCAATAAATTGCTATCCTCGGCAGATGAGGCAGCAAAGCTCTTGGGCGTAGAGAAgtaa
- Protein Sequence
- MLATQQHTTTTTATAASVAAAAAATTTITQHSSSAGSIDMERQRRDSTTSESSLEHLDLGRTPKKLSSSSGAPQPTSTPHDTTTATASSRKRKLRQQQHQQQQQQQHLLSDEDDEQQSLSQQQQQQQLEQSAQRPRHKQRRNAAAAAAASASIVVDYSASGDASSLRKKFRLNRSSVVGNGNGNGSELSESGFVDGSAHSGYLLSSSSAAGSSNSAVVAAAAAAMVAAQQQQQAASSSSSGGSSPNGNLCLSSAESGIGAGDDLMKYLCPICEVVSATPHEFTNHIRCHNYANGDTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCRYCHLTFTTNGNMHRHMRTHKQHQTTQQQQQQQQQSQSQQQQQSLSQSQQQQLPQSQQQQQQLSRRQQLAAKAIAAQLSGRSESYESDASCSTDVSSAQSHSSSNNSNSNNSHRSHSSSSSHRSHNNNNNNNSKLGNNNNVEVEQHVASKQRHKIKHNNNNNNVVDKQLQDELASDVEQQQHHDNDDDDDDVDDDDVAQVITSTPDVATLLASGGTTPSQSPAPAAMLLLLSCPACAADEFESLPALCQHLDDEHADIPAKCRECEVIFASHRQLQQHSCRAINGLQMMPLLGASSSPIHKQEQQDEDEDEDEEAEQQRQLEQEDDEQQQQQHQLKRDDFFQQLYLKGKANVAAGSTTSAAATASLPSPIKHELTERNGQDLADIQSILNMTSSSCTSSFLRNFEQSVNTPCSSQYSLDGRDGDEEAQDAFTNEFRRMKLRGEFPCKLCIAVFPNLRALKGHNRVHLASVGAAGPFRCNMCPYAVCDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHGKTSRDEVKRAIVYHPAEDASCEEGGKSGGAGGGSGSQQQRLLDADLSELSYRSVSPPVEPVSQLKHMLLAESTATAAATAAAAADVTAATAAVKSSAPLKIQVKSLDQLVDKPLAPALDLSMDVLDLSKKPTAAAAAHDLQQQQQQQQQQREQELQRERELLQQQQQQQQQQQQLFGAGDAATQYMQQLFRNLMFQQSPAFPFFGFMPPTTTAAAAAAAAAAAAAEKCSPATAAAAAAAATTAAATLPLPPGVGVGVGVPVPAAAAGIAGGPIKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQFYAQRQRSGHHVMRGRAANSNSAAAAAAAAAAAAAAAAMSNLSQQQHGHHGHHAHISDQVKYAILAQQLKARKDTDLLQQALAHGSSSVAGNPLLHFSSAYKQHSQQQQQQQQQLQQSNGQQQQQQQHNDDDEPKLIIDEDDDDDVDDVDDDDEHEEEELEDDEDEEEQLEELDEQEEQQQQQQQQQQLEQQQQQQQQQQPSTEQPQRTSTPIEAAKKVAETILEQAIKAGKSLELETKPNKTATPTVTPPVTPTVATAPPTASSMKSMIASAESVAKSLKEVASSPFKDESQDLVPVAKLVDNATSNQMSFNSYFRPSDVANHMEQSDEEGLVASGSASESNNSGTEDVTSGSSSSGSNNNGSGSNDTKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAMSVYVPAEDVSEPIPVPKSVEEIELEEQRRRNAEQQLEREREREREREREREREREREREQQLRRREKEQEREREQQQQLIQQLAAAAQQMVAAAANNSSSNAPGSPLANELQGNELPYKCHLCEYSFGERLQCLEHIKQQHAHEFALLLAKGAIETEEQLAAAATTTPVVPTPTTTASNVASDDENGLTSRAIKYPDYSNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCEICLRKFTLKHSMLRHMKKHSGRSHNALDLAGQSDCSDDEQSATPPSTPTPMSMPQAHNNNNNNNNNNHNCHNNNNNSKQSLRLPKLHELLDKANEWRVSRLGEQKENIAESATPTAAAAATTAAAAAAAAAAATAAAGGDLIGNLLGISDQGILNKLLSSADEAAKLLGVEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -