Dtri009912.1
Basic Information
- Insect
- Drosophila tripunctata
- Gene Symbol
- -
- Assembly
- GCA_035047385.1
- Location
- JAWNPS010000231.1:1129345-1131645[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0083 0.56 10.8 6.4 1 23 234 256 234 256 0.98 2 12 0.0011 0.072 13.6 2.9 1 23 262 287 262 287 0.94 3 12 0.00031 0.021 15.3 0.7 1 23 294 319 294 319 0.96 4 12 0.0018 0.13 12.9 3.1 1 23 327 349 327 349 0.96 5 12 9.9e-05 0.0067 16.9 1.0 3 23 358 378 356 378 0.98 6 12 0.00012 0.0081 16.6 0.1 1 23 384 406 384 406 0.98 7 12 0.21 14 6.4 6.4 1 23 412 435 412 435 0.98 8 12 0.012 0.82 10.3 1.8 1 23 441 463 441 463 0.95 9 12 0.00052 0.036 14.6 2.2 1 23 469 491 469 491 0.98 10 12 9e-06 0.00061 20.2 0.1 1 23 591 614 591 614 0.96 11 12 0.00072 0.049 14.2 5.7 1 23 620 642 620 642 0.97 12 12 0.0007 0.048 14.2 2.0 1 23 648 670 648 670 0.98
Sequence Information
- Coding Sequence
- ATGGAAGAGGAGGTGCCAGCCTCAATACACACATTGTGCCGCACGTGTTTAACGCACTTGCAGCACGATGAGGCCTACGATTTGTTTATACTGCCCGGACTGGCCaaaaagttgtgtgtgtgcacttcACTCTCTGTGGAACAACAGGATGGATACCCTAGAAATTTGTGCTCCATCTGCTATAGTCGCCTGAATGAGTTGCATGACTTTCAGAAGCAATGCGTGGACTCGGTGCAAAAGTTCAAGGATATGATGTCCAAGAACTGCTTTATAATGCGCACAGTGCCGGAATTTGATGCAACTGCCATACAGGTGACTGCAGCGCCACCTGTCGAGGACGAGGAGCACATCAATTTTGATCCACTGTTGAATACCAAGTTGGAAATTGGCAACGAAGAGGATGTATTCAAAATGATCGAAGATGTGGACAAGGAATCGGATAAAGAGGATGTGGATAATCTGGAGGATGCGTTCAATGACAGCGGCAGTGATTTTAACAAGGATGACGAGGATTTCCAAGCAGATAGCAGCGATACAGATGATGAGATGCCGCTATCACGCCTAAGAAGCAGCAGACGTACAGCTACCAAAGCTGGCAAAGCCAAGACAAAGTCCAAGATTGTAAAGATCAAGTCTGCTGCTGGCAAAGAGAAGCCGAAACCGAAGCGTATACCAGCGGGAGAGCGTTTGATAGATCGCTTTGAATGCCACTTTTGCCAGCAGAAGTTCATCAAGGCCAGCTGCTACGAGGAGCATATGAAATACCACAGTGATCAGCTGCCCTTCCAGTGTGCAGCCAAGGAATGTCAGCGCGGATTCACCACATCCACTGGGCTCAAGCATCACATGGAGCATACGCATCCGGAGCTGTGTAAACTGCACAAATGCACTGCCGAAGGCTGCAACGAAGCCTTTGCCCAGACTCGGATGTTAACGAAGCACTTGAGGAATGTGCATAATATAGCCAAGCCCGAGATACATCCCTGCTCCGACTGTGAGAAGGTATTCCGTTGTCCCATGGCCCTGAAGAAGCACATGTATAATCATACGGGAGAGGAGCTGCCCTTTGGCTGCACCATTTGCCAGAAGCGGTTTAGGGTGAACACAGAGCTCCGAGATCATCTGCTGCGTCATGCCGGGATTAAGAACTTTGTGTGTCCGTATTGTGGAGTGGGTAGAACGACCAAACAGGAGCTGGACAAGCACATACTGACACACACCAAGGAGAAGAAGTTCAAGTGCGATCAGTGTGATCACACATCGCACAACAAACAGTGCATGGCCAAGCACATCAAGGTGGTGCACATGAAGATCAGGAACTTTGTGTGCCAGTACTGTCCACGTTCCTTTGGCAGTGCCTATGCCTGCAAGAATCACGAGAAGCTGCACACACGTGACGATTGCTTCGAGTGCACCATCTGTGGACGCAAGTTTCTCTTCGAGAAGCGTTTAACGAAGCATTTGAGGACACATGCCAAGCGCAAGAACAAACCAGTGGCAGCTGGATCCGCAGCCAAGGCGGAAACGGCGGTGATGGCTACAGAGGCAGCCACATCAAGCACATCAACACTTGGTAATTTGGAGGTACAAGTGCCTAAGCCAGTTCACATTCCTGCACCCAAGCCAGCCAAAGTGCCCAAGCCACGAGATCCTAGACGCGTGGAGGTTGTGGACATTTCCCAGCTCGCGGGCACTTCGGTTAATCCCATACCCTCGGTATCGGTGTCCTCGTGGTCACCACAAGATGACTTCTCCAAGCACGAGGGTCAACACATTTGTCCGGATTGTGGCAAAgtgtttaacaaaattgcTGGCTTAAAGCTGCACATTAAAGTGGTGCATGACAAGATCAAGGACTATGCCTGTCGCTTCTGTCCCAAGCGTTTCAGCAAGAGTGGACACTTGCGGCATCACGAGTACACGCACACCGGGGAGAAGCCCTACGAGTGCAAGTTGTGTGCTCAGCGCTTCAGACATGATGCCACCTTGCGGCGACACTTGGAGTCACACAATCGACCGCCGCGCAAGAAGAAGGAACCACAGCCGCCCAAGCCAAAGCCCACAGATGGACAGATGGAGCCCAGATTAAAGCTAAATATGGAGCCCAAAAAGAACTATGAACAGTATCAGGATCCGGATGCGGAGCGTGCGGCGGCCACAGCTCAACTGATGGCTCAGCAGCTGGACGAGAGCGAGGCGAAACGTAGGGCGGAGGAGAAGGCCAGACAGATTCAGGAGGCAGCCTGTGAGCAGCTGCAGAAgctgcagcaggagcagcaggcaGCTACATACGATAGCTGA
- Protein Sequence
- MEEEVPASIHTLCRTCLTHLQHDEAYDLFILPGLAKKLCVCTSLSVEQQDGYPRNLCSICYSRLNELHDFQKQCVDSVQKFKDMMSKNCFIMRTVPEFDATAIQVTAAPPVEDEEHINFDPLLNTKLEIGNEEDVFKMIEDVDKESDKEDVDNLEDAFNDSGSDFNKDDEDFQADSSDTDDEMPLSRLRSSRRTATKAGKAKTKSKIVKIKSAAGKEKPKPKRIPAGERLIDRFECHFCQQKFIKASCYEEHMKYHSDQLPFQCAAKECQRGFTTSTGLKHHMEHTHPELCKLHKCTAEGCNEAFAQTRMLTKHLRNVHNIAKPEIHPCSDCEKVFRCPMALKKHMYNHTGEELPFGCTICQKRFRVNTELRDHLLRHAGIKNFVCPYCGVGRTTKQELDKHILTHTKEKKFKCDQCDHTSHNKQCMAKHIKVVHMKIRNFVCQYCPRSFGSAYACKNHEKLHTRDDCFECTICGRKFLFEKRLTKHLRTHAKRKNKPVAAGSAAKAETAVMATEAATSSTSTLGNLEVQVPKPVHIPAPKPAKVPKPRDPRRVEVVDISQLAGTSVNPIPSVSVSSWSPQDDFSKHEGQHICPDCGKVFNKIAGLKLHIKVVHDKIKDYACRFCPKRFSKSGHLRHHEYTHTGEKPYECKLCAQRFRHDATLRRHLESHNRPPRKKKEPQPPKPKPTDGQMEPRLKLNMEPKKNYEQYQDPDAERAAATAQLMAQQLDESEAKRRAEEKARQIQEAACEQLQKLQQEQQAATYDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -