Dtri014763.1
Basic Information
- Insect
- Drosophila tripunctata
- Gene Symbol
- -
- Assembly
- GCA_035047385.1
- Location
- JAWNPS010000325.1:265809-269002[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 7.4e-05 0.005 17.3 5.9 1 23 178 201 178 201 0.97 2 16 0.0025 0.17 12.5 2.3 1 23 243 266 243 266 0.97 3 16 0.0035 0.24 12.0 3.7 1 23 332 355 332 355 0.96 4 16 0.0031 0.21 12.2 0.4 2 23 410 431 409 431 0.97 5 16 3.1 2.1e+02 2.8 0.7 1 20 544 563 544 565 0.75 6 16 0.021 1.4 9.6 0.6 1 23 574 596 574 596 0.94 7 16 0.00027 0.018 15.5 0.6 1 23 603 626 603 626 0.96 8 16 0.0036 0.24 12.0 1.6 2 23 634 655 633 655 0.96 9 16 0.013 0.85 10.3 0.1 2 21 682 701 681 705 0.88 10 16 0.00029 0.019 15.4 1.1 1 23 740 763 740 763 0.96 11 16 0.58 39 5.0 1.0 1 22 770 791 770 791 0.95 12 16 0.00024 0.016 15.7 1.1 1 23 800 823 800 823 0.98 13 16 1.7e-05 0.0012 19.3 0.5 1 23 845 868 845 868 0.97 14 16 0.1 7 7.4 0.2 1 23 878 900 878 900 0.94 15 16 1.2e-05 0.0008 19.8 1.7 1 23 906 928 906 928 0.99 16 16 5.5e-05 0.0037 17.7 0.9 1 23 934 956 934 956 0.98
Sequence Information
- Coding Sequence
- ATGACACGGACCTGTCGCATCTGTGGAGGCGCAGATGGACGCTATTGGATTGAGACGCCAGTGCATAAATATGCAGAGAAAACATTTCACCAACTGCTGTCGGAGTTGGCCAGACTTGAGGTTGCTGTGGAACAGGCAGACAAGCTGCCGCCCTGGCTATGCCGCAGTTGTGCACAGAAACTGGAAAATGCCTACGACTTTGTGCTGCAGGCGCGTCAAACGCACGAACTCTGGTTGCAAAAACTGGCCACAGAAGCTGCACTGGATGAGGCCGACAAAGGCAGCTTGGAGTGCTTGCAGGAGACTCCAATTCAATTGCTGGAGATTGAGGGCGTAACCATTAAAATGGAGGAGCCATCTGCAGAGCCTGAGTTGCCACAAGCTGGCACAGCAATCACAGTGGATCCATTAATTAAGAAGAACTTGTATGAAGCCagcgatgacgacgacgacgatattgaagatgatgatgatgatgatgacgatgatgatgatgtgccGCTGAAGCAACGCAAGgcgcaacaaaagcagcacaaGTGCAATAAATGCGACAAATCCTTTAGATATGTGTCATATCTCTTCAGGCACAAGCAGCGGGATCACAGTCccaaattgaaatcgaagTCCAGTGTAGAACCATTTCTACACAATCTTCTCAAGAGCTCCATGACAGGCCAGAGCAGCGCCAACTCCGACTTGGATGTGGACAGTGAGGCGGATAACTACTACAAATGTGATCAATGCGACAAATCCTACAAGTACATCATGGTGCTGATCAGGCACAAGCACACGGCACACGGTGTCAACCAGTTGCCAGCGGAGCCAAGACCCATTCGTAGAGGGGAGACGAGTTTGGAgccagcagcaagaacaagaGGAGCTCAATGCTTAAAACCACCCAGCACAGACTCCTTGGTGCACAGTCTAATCAAGGAGATCAAAACGCCAgaggaggatgatgatgaactGGACAGCACTGGAGGCGATAACTATTACAAGTGCGATCAGTGCAGCAAGTCCTACAAATACATTGTCAGTCTGATTAAGCACAAGCACAAGGagcacaacaactacaaggATTCCGATGAGGAcaacgaggaggaggaggaggacggcacaacagcagccatGTCAGCCATGTCAGCCATGTCCAAGCCATCCCGCATTGATCGTCGGGTGAAGGATTTCGACTTGCATCGCTGTCGACCAAATGGCTCCAAGGAGATTCAGTGCATGATCTGTCTGCGAAGATTTGTGAAGCTACGCGAGCTACGCGAACATCTCCGAGCACATCCCAGGGACTTTAAATTCGAGGCACACGGTGAGCCCATCGAGCGGATTGCCGAAGGCTTCTACAGAACGGCGGTGGAGTCCACGGAGGCCGGTCTAAGAGTACGCATCTTAAATGATCTCAAACTGGGCATGTTTGGTCGCTACTATTCCATAACCAATGAGGCACGCTACGAGATGAATCTGGACAGCTCCGATACGGATAGCGATGGCGAGGCGGGAGTCGTGCAGCGACGTAGCTATGCCTGTGAGCTGTGCGATTCACCCAGCGCCATTTGGCCACGTAAATTCCAGCTGCATGAGCATCATCGTCAGCAGCACACGTGGCTGGAGGCACCCTATGTCTGTCAGCGTTGTGATTCCCGCTTCCTAAGCGCCCAACTCCTGGATCATCACACCCAGAAGCTCTGCCAGAACACGCTGAAGCGTTTCATGTGCGACAAGTGTCCGCAGCGTTTCTTCTGGCGCCGCAATCTGCGTGCCCATCTCGTGGAGCATAAGGAAAAGCAAGAGAATTATCCCTGTGATCAGTGCTCACGTAGCTTCCAGGACAAGAGCGCCGTGACGAAACACAAACTGATGCTGCACGATGTGGGCAATGCGTTGATTCCATGCCGCTGGTGTACACGGACATTCTATCGTGTGGCACTGCTGCACAAGCATGTGAAGCGTCATGGTTTCAGTGGTGAGGATCTGCCCTTGGCTGAGACTTTGCTGGCGGATGCGGCCAAGCCAGCGGGATCCAAGACAATTGTCTGCAAACTGTGCGACATGCAGTTCGTTAGCATTGCTGATCTGCGTCGGCACAACTCTATGCTGGCACACAGCATGGAGAGTTGCAATTATATGATAAGCACAGAGAATGGATTCGAGTTGCAGCTGGACGAGACGGACGATAGTGATGTGGAGACAGCCACGGGCAGATCCTACAGATGTGAGCTATGCGACATGTCCTTTCAGCGGCGCAGGGAGCTGAGTGAGCATCAATACTCCCTGCACACCTTTGATAAGCTACCCTATGCCTGTGAGCACTGCATCTTCAAGTCGGTCGATAAGACCATGTTGGAGCATCATTTGCGCACCCAGTGCTTGAATCAGGAGAAGAAGTTCAAATGCCAGCGTTGTGGCTACAAATTCATGTGGAGTTCGAATCTGGAGCAGCACATGGCCACTCAACATGCCAAAACTTCAATTCAGAcgccaactgctgctgctgctgcgaagCGAAGTCGACGCTTCAGATACCAGTGTCCCCACTGCTGGCGCTCCTTTGTGGTGCAGCCGAGTCTCGACAAGCACATCCGAGACATGCATGTGGCCAAGAAGAATCCGGGCAAGAAATACCTCTGCTCCTTATGCGGCCTAGAGTCACTCACGCCCAACAAACTCAGCATCCATATGCGTCGCCACAACGGCGAGAAGCCATTCAAATGCGATCTCTGTGACATGTCCTTCACCGTCTACTACGAGCTAAAGGTTCATCGTCGCAAGCATACGGGAGAGCGACCCTATCAGTGCACCTTCTGCGCCAAGGATTTCGCACGGCCGGACAAACTGAGGCGACATGTCTACATGCACAGCGTTAAGCGTTAA
- Protein Sequence
- MTRTCRICGGADGRYWIETPVHKYAEKTFHQLLSELARLEVAVEQADKLPPWLCRSCAQKLENAYDFVLQARQTHELWLQKLATEAALDEADKGSLECLQETPIQLLEIEGVTIKMEEPSAEPELPQAGTAITVDPLIKKNLYEASDDDDDDIEDDDDDDDDDDDVPLKQRKAQQKQHKCNKCDKSFRYVSYLFRHKQRDHSPKLKSKSSVEPFLHNLLKSSMTGQSSANSDLDVDSEADNYYKCDQCDKSYKYIMVLIRHKHTAHGVNQLPAEPRPIRRGETSLEPAARTRGAQCLKPPSTDSLVHSLIKEIKTPEEDDDELDSTGGDNYYKCDQCSKSYKYIVSLIKHKHKEHNNYKDSDEDNEEEEEDGTTAAMSAMSAMSKPSRIDRRVKDFDLHRCRPNGSKEIQCMICLRRFVKLRELREHLRAHPRDFKFEAHGEPIERIAEGFYRTAVESTEAGLRVRILNDLKLGMFGRYYSITNEARYEMNLDSSDTDSDGEAGVVQRRSYACELCDSPSAIWPRKFQLHEHHRQQHTWLEAPYVCQRCDSRFLSAQLLDHHTQKLCQNTLKRFMCDKCPQRFFWRRNLRAHLVEHKEKQENYPCDQCSRSFQDKSAVTKHKLMLHDVGNALIPCRWCTRTFYRVALLHKHVKRHGFSGEDLPLAETLLADAAKPAGSKTIVCKLCDMQFVSIADLRRHNSMLAHSMESCNYMISTENGFELQLDETDDSDVETATGRSYRCELCDMSFQRRRELSEHQYSLHTFDKLPYACEHCIFKSVDKTMLEHHLRTQCLNQEKKFKCQRCGYKFMWSSNLEQHMATQHAKTSIQTPTAAAAAKRSRRFRYQCPHCWRSFVVQPSLDKHIRDMHVAKKNPGKKYLCSLCGLESLTPNKLSIHMRRHNGEKPFKCDLCDMSFTVYYELKVHRRKHTGERPYQCTFCAKDFARPDKLRRHVYMHSVKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00478898;
- 90% Identity
- -
- 80% Identity
- -