Basic Information

Insect: Drosophila tripunctata
Gene Symbol: -
Assembly: GCA_035047385.1
Location: JAWNPS010000146.1:245559-247070[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.43 29 5.4 2.2 1 13 146 158 146 169 0.84

2 11 4.5e-05 0.0031 18.0 1.0 1 23 175 197 175 197 0.98

3 11 1.9e-06 0.00013 22.3 2.9 1 23 203 225 203 225 0.98

4 11 0.012 0.79 10.4 6.0 1 23 231 254 230 254 0.92

5 11 3e-05 0.002 18.5 0.4 1 21 261 281 261 282 0.94

6 11 8.9e-06 0.0006 20.2 2.5 1 23 289 311 289 311 0.98

7 11 3.4e-06 0.00023 21.5 2.4 1 23 317 341 317 341 0.98

8 11 4.4e-05 0.003 18.0 2.5 1 23 347 369 347 369 0.98

9 11 0.0042 0.29 11.8 6.6 1 23 375 397 375 397 0.98

10 11 4.3e-06 0.00029 21.2 1.1 1 23 403 425 403 425 0.97

11 11 0.00093 0.063 13.8 2.4 1 21 431 451 431 452 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.43	29	5.4	2.2	1	13	146	158	146	169	0.84
2	11	4.5e-05	0.0031	18.0	1.0	1	23	175	197	175	197	0.98
3	11	1.9e-06	0.00013	22.3	2.9	1	23	203	225	203	225	0.98
4	11	0.012	0.79	10.4	6.0	1	23	231	254	230	254	0.92
5	11	3e-05	0.002	18.5	0.4	1	21	261	281	261	282	0.94
6	11	8.9e-06	0.0006	20.2	2.5	1	23	289	311	289	311	0.98
7	11	3.4e-06	0.00023	21.5	2.4	1	23	317	341	317	341	0.98
8	11	4.4e-05	0.003	18.0	2.5	1	23	347	369	347	369	0.98
9	11	0.0042	0.29	11.8	6.6	1	23	375	397	375	397	0.98
10	11	4.3e-06	0.00029	21.2	1.1	1	23	403	425	403	425	0.97
11	11	0.00093	0.063	13.8	2.4	1	21	431	451	431	452	0.94

Sequence Information

Coding Sequence: ATGTCCAGCTATAAACTGGAGAACATATTTACACATCCCAAGCTTGCTGGTGAGCCAGAACTTGCTCTTATACTGGCTAATTGCACAAACTGTAAAATTAGTCAATCGGATGGGTTGCCTCAAAACATATGTGAGAACTGCATATTGGCCgctaaaaatgcatttaaattcaaattgaaatgcgaGCAGAGTGAAAAGTATTTTCAGAAACTGTTGGAAGAATgcgaacagcagcagttagCAGCTATAGACGAAGAGCTAAGCACCAGCACAGATTGGTGTCTGGGCGAAGTTTGCCAAGTCAAGCCATGGTCAGAGGAGGACGAACGGGGGGCGAGTGTAGTGAATGTGAATGATGATGCTGGTGACAGTTGTGATGCTAGCTCCATGGAAGAGATTTACGAACTGTTTCCCAGGCAACGTACAATGTTGAATTTCAAGTGTAGCGAATGTTCGGAAAGTTTTGCCAGCGAAACGAAATGTGATGAGCACAAAATACAGAAACATGGACTGCCCAACCGTTTTACCTGTACAATTTGCCATAAAGTATTGGCCACCATGTACTCATTGAAGGCACATCTAGCTCGACACGCGCTGGACAGCAGGTTCAAGTGCGAAAAGTGTGCCAAAGCGTTTAAACGAAAGAGTGAGCTACACACGCATATGGCATCCCATTCCCAGGAACGTTGCCACAAATGCGGTGGCTGTGCCAAGACGTTCAAGACCCGAAATAGTTTACATGATCACAAAGTACGAGCACATGCTAATGATGAACGTGCATACAAGTGTGATAAGTGTACGAAATCATTTGATACGGCAACGGAATTGGAAATGCATCGGGAAACATTTTGTGATGCACTGCCACACAAGTGTCCGCATTGCCCGAAGGAATTTAAGCTGAAATTGAATCTAATATCGCATATTATAACACATTCCGACAAGCGTCCACACAAATGTCCAAATCCCAACTGTTCGAGGGCCTTCAAAACGAAAAGTACCCTTAAATCCCATTTACGTGTGCATTCCGAGGATCGTCCGCATCAGTGTGAGATTTGTGCCATGGCCTTCAAGAGCAAGGAACATCTGCGAACGCATCTGGTAACGCATTCCAGTGCTCGACCCCACAAATGTAAACTCTGTTCCAAAACCTTTAAATCGCTAAAGGATGTGCATACGCACACCATAACCCATTCCAGCCAGCGTCCCTTCAAATGTGGACACTGTCCAAAGTCTTTCAAGACCAAGGGCGAGGTTAAATTGCACATTGTGGTGCACTCCAGTAAACGGCCCTTTGTCTGTGAGCACTGCAAGCGAACGTTTAAAGCGAAACCGCATTTGGTGGTGCACAAGAAGAAGTCATGTCGTGTTCTACGCGATCGCTCCAAGAAGCAGCTGGAGGGCAAGCAAGTGGTAGAGGATAACCAAGAGCTACAGGAACTGCaggaaactgaaattgaaattaaacagGTGACGCAGCAGgaacaaatgccaaaaaactTGGCAAACAGCTAG
Protein Sequence: MSSYKLENIFTHPKLAGEPELALILANCTNCKISQSDGLPQNICENCILAAKNAFKFKLKCEQSEKYFQKLLEECEQQQLAAIDEELSTSTDWCLGEVCQVKPWSEEDERGASVVNVNDDAGDSCDASSMEEIYELFPRQRTMLNFKCSECSESFASETKCDEHKIQKHGLPNRFTCTICHKVLATMYSLKAHLARHALDSRFKCEKCAKAFKRKSELHTHMASHSQERCHKCGGCAKTFKTRNSLHDHKVRAHANDERAYKCDKCTKSFDTATELEMHRETFCDALPHKCPHCPKEFKLKLNLISHIITHSDKRPHKCPNPNCSRAFKTKSTLKSHLRVHSEDRPHQCEICAMAFKSKEHLRTHLVTHSSARPHKCKLCSKTFKSLKDVHTHTITHSSQRPFKCGHCPKSFKTKGEVKLHIVVHSSKRPFVCEHCKRTFKAKPHLVVHKKKSCRVLRDRSKKQLEGKQVVEDNQELQELQETEIEIKQVTQQEQMPKNLANS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -