Dtri005244.1
Basic Information
- Insect
- Drosophila tripunctata
- Gene Symbol
- -
- Assembly
- GCA_035047385.1
- Location
- JAWNPS010000146.1:242334-244673[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 7e-05 0.0047 17.4 1.3 1 23 172 195 172 195 0.98 2 18 1.2e-05 0.0008 19.8 0.3 1 23 214 236 214 236 0.96 3 18 2.4e-05 0.0016 18.8 0.1 1 23 242 264 242 264 0.97 4 18 3.6e-05 0.0024 18.3 3.2 1 23 270 292 270 292 0.97 5 18 5e-06 0.00034 21.0 1.3 1 23 298 320 298 320 0.99 6 18 1.6e-05 0.0011 19.3 2.2 1 23 335 357 335 357 0.96 7 18 0.0001 0.0068 16.9 5.8 1 23 363 385 363 385 0.98 8 18 0.0042 0.29 11.8 0.6 1 23 391 413 391 413 0.97 9 18 0.00075 0.051 14.1 0.1 1 23 419 441 419 441 0.96 10 18 1.5e-05 0.001 19.4 0.5 1 23 447 469 447 469 0.97 11 18 8.6e-07 5.9e-05 23.4 3.0 1 23 475 497 475 497 0.99 12 18 0.00038 0.026 15.1 1.3 1 23 503 525 503 525 0.95 13 18 3.9e-06 0.00027 21.3 0.9 1 23 531 553 531 553 0.99 14 18 3.9e-06 0.00026 21.3 4.5 1 23 559 581 559 581 0.97 15 18 0.0025 0.17 12.5 0.3 1 23 587 609 587 609 0.95 16 18 0.0002 0.013 16.0 0.7 1 23 615 637 615 637 0.94 17 18 0.00023 0.015 15.7 1.1 1 23 643 665 643 665 0.94 18 18 0.00023 0.016 15.7 2.7 1 23 671 694 671 694 0.94
Sequence Information
- Coding Sequence
- ATGGACGAAGTTTGTCGCTTTTGCACCATAAACTGTGCAACGCTTGAGAAAATATTTCCCGACAGCGATCAAACAGCAATTAATGAGCCATTACTTATTGTGGTACTCGAAGATTGTACAAATTGTGTAATAAGGGAATTGGATTCATTGCCTCAAAACATATGTGCGCCCTGCATAACGGCtgctaaaaatgcatttcaatttaagctCAAATGCCAGCAAAGTCTAATGTATTTCAGGGAACTCAACGAATGTGAGCAGAAACCCAATATGGCGGAACTCACCACAGGCGATTGGTGTATAACAGAGTATGCATTGGACGAGGGCACCATCAAACAAGAGCCGAATAACACTTTGGACGAAGTGCAGGAACCCGAAGTGGATGATGACAGTGAGACaagctcaacaacaacaacagaatcaAACGAGCTTATGGATGAAGATTATACCGAGGAGAGTGATGAAGCCCATGAAGCTCCAGATTTAAATCGACGAGCCATTTTGGAAACGGATTTCAAGTGTTCCAGCTGCTCGAAAAGCTTTGCCAACAAATACATACTAAGGCGACACATTGAAACCATACATTTGGGACTTACAAAAGTCTATACCTGTCCTACTTGGCACACTGAAGAGCGACCCTATATATGTGATGACTGCCCCAAAgggtttaaaacaaaacaagagcTAAAAATGCATAGTCTGGTGCATACGGAAGAGCGACCGTTTCCGTGCGATCAATGCCAGAAGGGATTCAAGAGTGCGGCCAAATTGCAGGCACATGTGCTAATACATACCGAGGAGCGGCCGTTTAAGTGTGATCAGTGTTCGAAAGcgtttaaattcaaatacaatttgaaaCTGCATCGTGTGAGTCACTCCGAGGAGCGTCCCTTTAAGTGTGAACAGTGTTCGAAAGCGTTTAAAACGAAACCAATGTTGGCCAAGCACACACTGACGCATTCGTTGAAAAGGGAAACTactaacgataacgataaacCACGTTACCACTGTGACCTCTGCCCGAAATCgtttaaaaccaaaatgaatttaaaattgcacGCCACTGTGCATTGCGAGGATCGTCCGTATCAATGTGAACACTGTCTAAAGACATTTAAACgtgattattatttaaaggATCACATGAAATTCCATTCGGACGAACGGCCCTTTAAATGTGAACTCTGTCCCGGGACGTTCAAGACGCAAACCATATTAAATCGGCACAAAGATGTCCATACCGACGAACGACCATTTCAATGTGATCTCTGTCCGTTGGCGTTCAAAAACAAACCGGATTTGGGTAGCCATCGGGCGCTACACATAACCGAACGACCGTTCATTTGTGACATCTGTTCGAGTGCGTTCAAAAACAAGGGCAATCTCAATAAGCACCGACTGATTCATACCAGCGAACGGACATTCAAGTGTGATGAATGCCACAAGGCGTTCTTTGGCAACAACGAGTTGAATCGTCACATGCGTACGCATTCGACAGAGCGACCGCATATCTGTGAGCTGTGCTTGAAGGgctttaaaaccaaaattgaATTGCGACGACACAAAATCATCCATTCGGAAGAGCGGCCCTACAAATGTGATGAGTGCCCCAAGGCGTATAATTTGAAGAGCGAACTAAATCGACACAAATCCACGCATTCGGGCCAACGGCCGTATCAATGTGATCACTGCCCGAAGACCTTTAAGAATATATCGCATTTAAATCAACATCGGGTGATGCATTCGAATCAACGCTCCTTCAAATGTCAACTCTGTCCGAAGGCGTATAACTTGAATAACGATTTGAATGTGCACAGTGTGATGCATGCCAAtgaattaaactttaaatgtgACCACTGTCCAATGGCCTTCAATACCCTGTACGATTTGAATATGCACAGTGTGATACACGCTGACGAACCTGCCTTCAAATGTGACCACTGTCCCATGGCTTTTAATACCACATACGATCTGAATTCGCACAGTGTGATTCATTCCAATGAACCCGCCTTCAAATGTGAGCACTGCCCGATGACATTTAGAAAAAGTTTCGATTTAAATATTCACAATAAACTATTACACAATCAGACTGGCGATCTGGTGGAGGATACGTAA
- Protein Sequence
- MDEVCRFCTINCATLEKIFPDSDQTAINEPLLIVVLEDCTNCVIRELDSLPQNICAPCITAAKNAFQFKLKCQQSLMYFRELNECEQKPNMAELTTGDWCITEYALDEGTIKQEPNNTLDEVQEPEVDDDSETSSTTTTESNELMDEDYTEESDEAHEAPDLNRRAILETDFKCSSCSKSFANKYILRRHIETIHLGLTKVYTCPTWHTEERPYICDDCPKGFKTKQELKMHSLVHTEERPFPCDQCQKGFKSAAKLQAHVLIHTEERPFKCDQCSKAFKFKYNLKLHRVSHSEERPFKCEQCSKAFKTKPMLAKHTLTHSLKRETTNDNDKPRYHCDLCPKSFKTKMNLKLHATVHCEDRPYQCEHCLKTFKRDYYLKDHMKFHSDERPFKCELCPGTFKTQTILNRHKDVHTDERPFQCDLCPLAFKNKPDLGSHRALHITERPFICDICSSAFKNKGNLNKHRLIHTSERTFKCDECHKAFFGNNELNRHMRTHSTERPHICELCLKGFKTKIELRRHKIIHSEERPYKCDECPKAYNLKSELNRHKSTHSGQRPYQCDHCPKTFKNISHLNQHRVMHSNQRSFKCQLCPKAYNLNNDLNVHSVMHANELNFKCDHCPMAFNTLYDLNMHSVIHADEPAFKCDHCPMAFNTTYDLNSHSVIHSNEPAFKCEHCPMTFRKSFDLNIHNKLLHNQTGDLVEDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -