Dtri003246.1
Basic Information
- Insect
- Drosophila trichaetosa
- Gene Symbol
- -
- Assembly
- GCA_035043205.1
- Location
- JAWNNE010000074.1:10117750-10120275[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.013 0.88 10.2 3.7 3 23 281 301 279 301 0.97 2 12 0.011 0.76 10.4 0.4 1 23 307 332 307 332 0.91 3 12 0.0021 0.14 12.6 1.0 1 23 339 364 339 364 0.96 4 12 0.00057 0.038 14.5 2.6 1 23 376 398 376 398 0.97 5 12 2.1e-06 0.00014 22.1 0.1 1 23 405 427 405 427 0.98 6 12 0.013 0.86 10.2 0.2 1 23 433 455 433 455 0.97 7 12 0.069 4.6 7.9 3.0 1 23 461 484 461 484 0.97 8 12 0.0053 0.35 11.4 4.6 1 23 490 512 490 512 0.97 9 12 0.11 7.3 7.3 5.3 2 23 519 540 518 540 0.96 10 12 0.00012 0.0081 16.6 0.2 1 23 643 666 643 666 0.95 11 12 0.11 7 7.3 1.3 1 21 672 691 672 694 0.75 12 12 1.7e-07 1.1e-05 25.6 3.0 1 23 700 722 700 722 0.98
Sequence Information
- Coding Sequence
- ATGGACGTGGCGCGGACATACTCCATACATACGCTGTGTCGCATTTGCCTTAATCTCTTGCAAAACGATGCTGCCTACGACCTGTATCTGGTCCCAGGTCTGGCCAAAAAACTTTGTCTCTGCACCTCACTGTCTGTGGAGCAGAACGATGGCTTTCCCAAGAACCTGTGCACCAATTGCTACACCCGGCTCAACGATATGCACGATTTCCAAAAACTGTGCGTGGACTCTGTACAAAAGTTTCAGGATATGGTTACCAGCAACGCCTTCACATGCCAATCGAATTTTGACGTATTGGATCCATGTGTGGCGACGCACGATCTAcacaatgatgatgacgaccaCATTAATTTTGATCCACTGTTGAATCATAAAATGGAGCTAATCGAGAACGAAGAGGATGTCTTCAAGATGCTCGAGAATTGTGACAAGGAGGCCGAGGAGGTGGAAAAGGAAGAGAAAAGAGAGATCAAGCAGCCTCATATTATAAGCATGTTCAACGAAGACTCATCTTCAATTGAGagcggcaacgacaacgacaggGACGTAGACTTCGAACCAAACAGCAGCGATGACGACATTCCTTTGGCGCAGCGCATACGAGGCAGTACCAAAACCACCAGAGCCGTCAAGTCTAAGCCTAGAAAGAAGAAGCCCGCTATTGTTATTGGAGTTGGcggcgatgacgacgatgatgatgatttctCTACCTCTTCGGATGACGACTCagacgatgatgatggcgaCACTGATCCCGACGGAAGACGGCGCGGCTCCAAGGATAAACCAAAACGCAAACGCATTCCAGCTGCCGAACGACACCTGCATCGCATCATTGACTGTCACATTTGCCATCAGAAATTCAAGAAGGCAATCCGCTACGAAGAGCATATGAAGTACCACAACGATCTGTTGCCTTTCCAGTGTAAGGTGGAAGCCTGTAAGAAGGGCTTCACGACCGCCAACGGACTACGCATCCACGTCGATCATGCCCATACCGAACTCTCCGAGGTGCATACCTGCAGTGCCGAAGGCTGCGGTAAGACATTCCCACGAGTGCGTCTGCTTACCTTCCACATGAAGAAGGTGCACAACATTTCCAAGTCGGCGGCACCATTGCGCGACTTCCCCTGCACCGAGTGCAACACTGTTTTCCGTTGTCCGACAGCGCTCAAGAAGCACATGTACAAGCACACCGGCGAGGAGCTGCCATATCCATGCAACATTTGCGGCAAACGCTTTGTCATCAACAGCGCACTTAGGGATCATCTAATGCGCCACGCAGGCATAAAAAATCACGTTTGCCCCTACTGTGGAGTGGGTAAAACGACTCGACAGGAGTGGAACGCCCACATACTGACGCATACCAAGGAAAAGAAGTTCAAGTGCCGCCAGTGCGATCATGCCTCCCACAACAAACAGGCTCTGTCCAATCATGTCAAGGTGGTGCACATGAAGATCAAGAACTTTGCCTGCCAATATTGCGGCAAGACCTTTGGCAAGTCGCATGCGTGCAAGGTGCACGAGAGGACGCATACGGGAGAGAAGTGCTGCGAGTGCAAGATCTGCGGTAAGATCTTCCTCTGCGAGAAGAGTTTAACCAAGCATTTGAAGACGCACGAGAAGCGCGATCTGCCAGTGGACACCCATCGACCGCTCAACATTCCGCTGCCCGGTGTCCAAATACCCCCACATTTGCAAGACGATGGAATGATGCCTCCAAATATGGCCGACGATTTGCTGAAGGCGTGTGGCGGCGGgcccgcaacaacaacaacagcagccgcagcagctaAGCCGAAAAATTCTCGACGCGTCCAGCGTGTGGATATATCGCAGCTAGCGGGCACCTCTGTCAATCCCATACCATCGGTATCGGTGCCCTCGTGGTCGCCCCAAGTCAACTTCACAAAGAAGGAAGGCCAGCACATTTGTCCCGGCTGTGGACGTGGCTTTAATAATATTGGCAACATGAAGCTCCACTACAAGATAATACACGAAAAGGTGAAGGACTTTGCTTGTCGCTTCTGCCCGAAGCGCTTCTCAAAAGCACAAATCTTGCGTCATCACGAGTGGATTCACACCGGCGAGAAGCCGTTTGAGTGCAAGATATGCGGCAAACATTTCCGCCAAGAGACGGCGCTGAAGAAGCACATTAAGACGCACGACAAGCCCAACCGGCGCAACTATCCCGAAAAGGTTCAAGAACCACAGCCCACGTTCCACAAGATCGAACCTCGCGAAATTGATCGTGAGCCAAGAAACTATGAACAGTATCAGGACCCGGCCGCAGAGcgagctgctgccacagcggAGTTGCTCGCCCATCAGATCGAGGAGAATGAATCGAAGCGCAAGGCAGACATCGAAAGACGAAAGATTCAAGAAGCCGCTTGCGAGCAGCTGaacaagctgcagcagcagcaggagatcGAAAAGGCAACCACATCCTATGATGGCTACTATGCACAAAAGGCTCAAGCTGAGGGCCTCAGTGTGGATGCACTGAAAATAGACCATGTGTAG
- Protein Sequence
- MDVARTYSIHTLCRICLNLLQNDAAYDLYLVPGLAKKLCLCTSLSVEQNDGFPKNLCTNCYTRLNDMHDFQKLCVDSVQKFQDMVTSNAFTCQSNFDVLDPCVATHDLHNDDDDHINFDPLLNHKMELIENEEDVFKMLENCDKEAEEVEKEEKREIKQPHIISMFNEDSSSIESGNDNDRDVDFEPNSSDDDIPLAQRIRGSTKTTRAVKSKPRKKKPAIVIGVGGDDDDDDDFSTSSDDDSDDDDGDTDPDGRRRGSKDKPKRKRIPAAERHLHRIIDCHICHQKFKKAIRYEEHMKYHNDLLPFQCKVEACKKGFTTANGLRIHVDHAHTELSEVHTCSAEGCGKTFPRVRLLTFHMKKVHNISKSAAPLRDFPCTECNTVFRCPTALKKHMYKHTGEELPYPCNICGKRFVINSALRDHLMRHAGIKNHVCPYCGVGKTTRQEWNAHILTHTKEKKFKCRQCDHASHNKQALSNHVKVVHMKIKNFACQYCGKTFGKSHACKVHERTHTGEKCCECKICGKIFLCEKSLTKHLKTHEKRDLPVDTHRPLNIPLPGVQIPPHLQDDGMMPPNMADDLLKACGGGPATTTTAAAAAKPKNSRRVQRVDISQLAGTSVNPIPSVSVPSWSPQVNFTKKEGQHICPGCGRGFNNIGNMKLHYKIIHEKVKDFACRFCPKRFSKAQILRHHEWIHTGEKPFECKICGKHFRQETALKKHIKTHDKPNRRNYPEKVQEPQPTFHKIEPREIDREPRNYEQYQDPAAERAAATAELLAHQIEENESKRKADIERRKIQEAACEQLNKLQQQQEIEKATTSYDGYYAQKAQAEGLSVDALKIDHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01570408;
- 90% Identity
- iTF_00534754;
- 80% Identity
- -