Basic Information

Insect: Drosophila triauraria
Gene Symbol: salm
Assembly: GCA_014170255.2
Location: CM024334.1:14329327-14339322[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 3.6e-06 0.00028 21.1 0.9 1 23 454 476 454 476 0.98

2 7 7.2e-06 0.00055 20.2 2.1 1 23 482 504 482 504 0.98

3 7 0.012 0.94 10.0 1.5 2 23 842 863 841 863 0.98

4 7 5.2e-08 4e-06 27.0 0.5 1 23 869 891 869 891 0.98

5 7 0.00016 0.012 16.0 2.3 1 23 901 923 901 923 0.98

6 7 0.021 1.6 9.3 2.9 2 23 1224 1245 1223 1245 0.97

7 7 2e-08 1.6e-06 28.2 1.3 1 23 1251 1273 1251 1273 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	3.6e-06	0.00028	21.1	0.9	1	23	454	476	454	476	0.98
2	7	7.2e-06	0.00055	20.2	2.1	1	23	482	504	482	504	0.98
3	7	0.012	0.94	10.0	1.5	2	23	842	863	841	863	0.98
4	7	5.2e-08	4e-06	27.0	0.5	1	23	869	891	869	891	0.98
5	7	0.00016	0.012	16.0	2.3	1	23	901	923	901	923	0.98
6	7	0.021	1.6	9.3	2.9	2	23	1224	1245	1223	1245	0.97
7	7	2e-08	1.6e-06	28.2	1.3	1	23	1251	1273	1251	1273	0.99

Sequence Information

Coding Sequence: ATGAAAAATCACCTGTCCAACGTTCTGTGTGCGATGCGTAGTGACTTCAAGGATAATCACCAGGAGACCATCAATAAAATGATACAATTTGGTACAGTGAAATATGGCATTGTCAAACAGCTGAAGGATCGCGCTCGCAGCGCCGACAAAGAAATAGGCAGCGATCAGGAGGAGAACGGCGGCTGCTCGCCGCTAACCACGGCCACCACCACGGCCAGTCCCAGCCGCAGTCCCGAGCCGGAGGAGGAGCAGCATCAGCACCAGCACGAGGAGGAGCGCGACCACGAGCAGGGCTCGCCCGCTCCCAGACAGCAGCCAAAGGAGAGCGAGGAAGCGCTTCAATCAGACCAAGAAACCGTTGAGGATAACAACAACAAGGTGGTGGTGATGACCAAGCCAAGTTCCGAGGAGCGGGAGCCCAACGCCAGTGGCTCCATGCCCAGTTCACCGGTGGCCGAGGCCAGGGCCGAAGAGGCAGCCACTGAGAGGGCCACCGAAAAGGAGAAGGACATCGAGGTGGATGTGGAGATGTCGGATGACCAGTCGAGGAGTGTTCTGCCCCAGACGCAGGCAGCTTTGCCTGGAGCCGCTGGCGCCCCGGTGACCCTCGAGGCCATCCAGAACATGCAGATGGCCATTGCCCAGTTCGCGGCCAAGACCATTGCCAACGGCTCCAACGGGGCGGACAACGAGGCTGCCATGAAGCAGCTGGCCTTTCTGCAGCAGACGCTCTTCAACCTGCAGCAGCAGCAGCTCTTCCAGATCCAGCTCATCCAGCAGCTGCAGTCGCAGCTGGCCCTCAACCAGGCCAAGCAGGAGCTGGACACCGAGGAGGAGCAGGAGCAGGAGCAGGAACAGGAGCAGGACCAAGAGCTCGAGACGGACACCTACGAGGAGGAGGAGCGCATTGCGGACATGGAGCTCCGGCAGAAGGCAGAGGCTCGCATGGCGGAGGCCAAGGCCCGCCAGCACCTGATCAATGCGGGGGTTCCCCTGCGCGAATCCTCCGGTTCCCCAGGCGAGTCCCTGAAGCGGCGAAGGGAGCACGACCATGAGTCCCAGCCCAGCCGAAGGCTCAGCTCGGAGACCGCGCACAAGGAGAGCTCCGCCCAGGAGGCGCTGGCCAAGCTCAAGGAGATGGAGAACACGCCGCTGCCCTTCGGCTCGGACCTGGCCTCCAGCATTATCACCCACCACGACGACCTGCCGGAGCCCAACTCCCTGGATCTGCTGCAGAAGCGCGCCCAGGAGGTGCTCGACTCCGCCTCGCAGGGCATCCTGGCCAACAACATGGCCGACGACTTCGCCTTTGGCGAGAAGTCGGCGGACGGCAAGAACCGCAACGAGCCCTTCTTCAAGCACCGCTGCCGGTACTGCGGCAAGGTCTTCGGCTCCGACTCCGCCCTCCAGATCCACATCAGGTCGCACACCGGTGAGCGGCCCTTCAAGTGCAACGTCTGCGGCAGCCGCTTCACCACCAAGGGCAACCTAAAGGTCCACTTCCAGCGCCACGCCCAGAAGTTCCCGCACGTGCCCATGAACGCCACGCCCATTCCGGAGCACATGGACAAGTTCCACCCTCCGTTGCTGGACCAGATGTCACCCACGGACAGCTCGCCCACGCACTCGCCGGCTCCGCCCCCGGTCTCGGCGGCTCCCACCTCGTTTGCCCCGGCCTTTCCGGGACTGCAGAACCTCTACCGCCCGCCCATGGAGATCCTGAAGACCCTCGCCCGCCTCGAGGCGGAGGAGGAGGAGGAGGAGGAGCAGCGAGCGGTGCAGGTGAAGAATGAGCCCATGGAGGAGGAGAAGGACCAAAGGGAAGAGCGCGAGCGTGAGCTTGAGCGAGAGCGAGAGCAGGAGAATGCAGAGACCTCCGAGCCCGAGCCGGAACCCCTGCCCCTGGAGGTGAACATCAAGGAGGAGCGGCTGGAGTACGAGCCGGAGCGGTCTCAGGAGGAGGACCGTCACTCAGAGCACAGGAGAACACCCTCGCCAACGCCCAAGGAAGAGCGCTCGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCTATCCGCCGGTGGTGCAGCCCATCCAGCCCGCCGGCCTGATGCACCAGCAGCCCTCGCCCGGCTCCCAGTCGCACCTGGATCACCTGCCCACGCCGGGTCAGCTGCCGCCGCGCGAGGACTTCTTCGCCGAGCGCTTCCCCCTCAACTTTACCACCGCCAAGACCCACTCGCCCGAGCACCACTCCCCCGTGCGATCTCCGGCGGGAGGAGCCCTGCCCCCGGGCGTACCGCCACCGCCTCATCACCACCCACACCACATGGCCCGGTCGCCGTTCTTCAATCCCATCAAGCACGAGATGGCCGCCCTGCTGCCGCGTCCGCACAGCAACGACAACTCGTGGGAGAACTTCATCGAGGTCTCCAACACCTCGGAGACGATGAAGCTCAAGGAGCTGATGAAGAACAAGAAGATCAGCGACCCCAACCAGTGCGTCGTCTGCGATCGGGTCCTCTCCTGCAAGAGCGCCCTCCAGATGCACTATCGCACCCACACGGGCGAGCGGCCCTTCAAGTGCCGCATCTGCGGACGCGCCTTCACCACCAAGGGCAACCTCAAGACCCACATGGCGGTGCACAAGATCCGGCCGCCCATGCGCAACTTCCACCAGTGCCCCGTCTGCCACAAGAAGTACTCCAACGCCCTCGTCCTGCAGCAGCACATCCGCCTGCACACGGGCGAGCCCACGGACCTCACCCCGGAGCAGATACAGGCGGCGGAGATCAGGGATCCGCCGCCCTCCATGATGCCGGGTCACTTCATGAATCCCTTCGCGGCGGCAGCCTTCCACTTTGGCGCCCTGCCAGGTGGTCCTGGTGGGGCTCCGGGAGCCCCGAACCATGGCGTGCACAACGGCGGCCTGGGCTCCGAGTCCTCGCAGGGGGATCTGGACGACAACATGGATTGCGGCGAGGACTACGACGACGATGTGTCCTCGGAGCACCTCTCCAATAGCAATCTAGAGCAGGAGGGCGACAGGCCGAGGTCGGGCGATGACTTCAAGTCCCTGCTCTTCGAGCAGAAGCTCAGGATCGATGCCACGGGTGTGGTCAACACCAATTCCGTGCGCCCGCGATCCTCTGCCTCGAGCCATGGCCACTCGGCGGGCTCCACCTCGGCGCCCACCTCGCCCACGGTCAACCAGTTGCTGGTGCCGAAGCCCAGTGCCTCGCCCGCTCGTTCGGAGGCCTCCCAGGGCGCCCTGGACCTCACGCCACGCGCTGCTCCCACCTCCAGCTCCAGCTCGCGATCGCCGCTGCCGAAGGAGAAGCCCGTAAGTCCGCCCAGCCGGCCCAGGAGTCCCAGTGGCCCCAGCAGTGTCCATGCGCCCACCTCCCTGCTCTCCTCCCCGCTGCAACCCACGAGTGGACCTGGTGGAGCCATGTCCGGAGGTGGACCCCCACCCAATCCGCTGATGGGCGCCCGGCCGCCCTTCGGCATGTTCCCCAACCTGCCGCTCTTCCCGCCCGCCACCACGCAGAATATGTGCAATGCCATGAACCAGATCGCCCAGTCCGTGATGCCGGCGGCGCCGTTCAATCCGCTGGCGCTCAGCGGCGTCCGCGGCAGCACCACCTGCGGCATCTGCTACAAGACATTCCCCTGCCACTCGGCGCTGGAGATTCACTACCGGAGCCACACCAAGGAGCGGCCCTTCAAGTGCAACATCTGCGATCGCGGCTTCACCACCAAGGGCAACCTCAAGCAGCACATGCTGACCCACAAGATCCGCGACATGGAGCAGGAGACCTTCAGAAATCGTGCCGTAAAGTATATGAGTGAGTGGAACGATGATCGCGAATAA
Protein Sequence: MKNHLSNVLCAMRSDFKDNHQETINKMIQFGTVKYGIVKQLKDRARSADKEIGSDQEENGGCSPLTTATTTASPSRSPEPEEEQHQHQHEEERDHEQGSPAPRQQPKESEEALQSDQETVEDNNNKVVVMTKPSSEEREPNASGSMPSSPVAEARAEEAATERATEKEKDIEVDVEMSDDQSRSVLPQTQAALPGAAGAPVTLEAIQNMQMAIAQFAAKTIANGSNGADNEAAMKQLAFLQQTLFNLQQQQLFQIQLIQQLQSQLALNQAKQELDTEEEQEQEQEQEQDQELETDTYEEEERIADMELRQKAEARMAEAKARQHLINAGVPLRESSGSPGESLKRRREHDHESQPSRRLSSETAHKESSAQEALAKLKEMENTPLPFGSDLASSIITHHDDLPEPNSLDLLQKRAQEVLDSASQGILANNMADDFAFGEKSADGKNRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHAQKFPHVPMNATPIPEHMDKFHPPLLDQMSPTDSSPTHSPAPPPVSAAPTSFAPAFPGLQNLYRPPMEILKTLARLEAEEEEEEEQRAVQVKNEPMEEEKDQREERERELEREREQENAETSEPEPEPLPLEVNIKEERLEYEPERSQEEDRHSEHRRTPSPTPKEERSPXXXXXXXXXXXXXXXXXXXXXXXXGYPPVVQPIQPAGLMHQQPSPGSQSHLDHLPTPGQLPPREDFFAERFPLNFTTAKTHSPEHHSPVRSPAGGALPPGVPPPPHHHPHHMARSPFFNPIKHEMAALLPRPHSNDNSWENFIEVSNTSETMKLKELMKNKKISDPNQCVVCDRVLSCKSALQMHYRTHTGERPFKCRICGRAFTTKGNLKTHMAVHKIRPPMRNFHQCPVCHKKYSNALVLQQHIRLHTGEPTDLTPEQIQAAEIRDPPPSMMPGHFMNPFAAAAFHFGALPGGPGGAPGAPNHGVHNGGLGSESSQGDLDDNMDCGEDYDDDVSSEHLSNSNLEQEGDRPRSGDDFKSLLFEQKLRIDATGVVNTNSVRPRSSASSHGHSAGSTSAPTSPTVNQLLVPKPSASPARSEASQGALDLTPRAAPTSSSSSRSPLPKEKPVSPPSRPRSPSGPSSVHAPTSLLSSPLQPTSGPGGAMSGGGPPPNPLMGARPPFGMFPNLPLFPPATTQNMCNAMNQIAQSVMPAAPFNPLALSGVRGSTTCGICYKTFPCHSALEIHYRSHTKERPFKCNICDRGFTTKGNLKQHMLTHKIRDMEQETFRNRAVKYMSEWNDDRE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00533263;
90% Identity: iTF_00590409;
80% Identity: -