Basic Information

Gene Symbol
ct
Assembly
GCA_035043265.1
Location
JAWNND010000871.1:53476-91938[-]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 7.4e-27 7.7e-23 80.5 0.0 3 72 1236 1306 1234 1311 0.95
2 3 7.3e-32 7.7e-28 96.6 0.0 3 77 1725 1800 1723 1802 0.96
3 3 4.5e-31 4.7e-27 94.0 0.0 3 76 2003 2077 2001 2080 0.96

Sequence Information

Coding Sequence
ATGCGACTGACAACAATTGGAGCGGgaggaagcagcagcagcagcagcaacagcagcagcagttgcaagcTTGGAAAACTATCTCTAAATCGATTCCTCGATAAGAATCGCGCTACTCAAGCTGAGAAGGAAGTGAATACACTTAAGGAGCAACTATCCACAAGCACGCctggcagcaacagcgacagcaacagcaacagcgacaacaataacacaacagcagcaacaaccacaacgacaacagcaacaggagcaacagtAGCAGGCTTATTAAACGGTGAGGAGGAGGAAGGAGCCACTGGGAATAGTGAAAGCGAGTGTGACAAACTGTTGAATAGCTCGATTGTTGCAGCGGCAATAACGCTGCAACAGAACGGCGGCAATCTGCTGGCCAATACAAATACACCGTCGCCATCGCCGCCGTTGCTGAGCgctgagcagcagcaacagttgcagagCAGTCTGCAGAACGGCGTCGGTGGTGCTTGTCTCAATCCGAAGCTCTTCTTTAATCACGCACAGCAAATGATGATGGaagcggcagctgctgctgctgctgcggcggctgcagctgcagcggcagcacaacaacaacaacagcaacaatcgcCCATGCACTCCCCccttgcagcagcagccaacaacagcacaacacaagcagcagcaacaacaacagttgcaacaaacacattagcagcgacagcagcaggagatccaccagcagcagcagcagcagcagcagcaacattagcAATACCAACACATGCTGCTgaggcaacagcaaccagcaattgcaacgatgatgacgaggatgatgatgaggaagaTGCATCGATGCAGTCAAATGTTGCACATGCCGATGGCGAGCTCGATGACGATGATATGGAGTTGGAGACAGatcatgttgctgctgataacagcaatgttgttgctgccgttgctgctgaGACATCAGCAAGAACTGAACATATTGCCGATGTGCAGGCAACGCAACATGTTGATGataatgacgatgatgatgatggggatGATGCAGATGTTGCTGATGAGCATGAGGAGGAgcacgatgatgatgaggaagCTAGTTTAAATGTTAGCAATaatcataacaacaacaataccgaTAGCTGTAGTcgaaagaacaacaacaacaacaacagtgagaCGCAACATGTTGCACTGCGTGATAATAATGTAAATGAGCAACATGTGGCACATAGCGCTGAGGATGAAGATTgcaccaacaataacaatactaacagcaacaataacaacaacaacaccagcaacagcaatgagaAGCGCAAAAAGCGCAatgccaccaacaacaacaacaataacaacaacaatcagccCGCTGTTCTATTAGCTGCCAAAGACAAAGAGTTCTCTTTAAACATTGTCAAGTTCATTGCACTGTCAATCATCAGTGAAATCATCAGTGATCAGATCAGAAATCATCCCGCATTCCGCCTGCCCATTGAATTTGACATCTACTCTGGCTTGGACTTGGAGTTGGAGTGGGAGTTGAAGTTGGTTTTGAACTTCCCCTACAAGTTGACCAGCATAATGCGTAACATTAAAGCACTTTTGGATGAGTTGCAACGCCTGCGAGCTCTGGAGCAAACTCACCTTGTACAAATCCAAAGGCTCGAGGAGCACTTGGAGGTGAAACGACAGCACATAATGCGATTGGAGGCGCGTTTGGATAAGCAACAGATCAATGAGGCATTGGCCGAGGCAACTGcattggctgctgctgttaatgcggcagcaacaaataataataacaataataacaacaatagtaatagcaatatcaataataacaataataacaacaacaatcacagtAGCCAGAGTAGTGAGAACAACaatgagacaacaacaacaccaacaacaacagcgacagtgttcaatacaacaacagcaacaacaacagatctTACATCGAGTCATCAGCacaatgacgatgatgacgacgatgatgacgatgataatgatcatgatcatgatAATGAGCTGCGCGATGccattgatgatgatgacgatatGGAAATAACTGGCaacgaacaacaacatacacaacaacaacatgctgTTGTTAACAATCGGCATGAGGACGATAACGATGAGGAGGAGGCCGAGGAACAGGATGCTGATATGTCCAATGCCACAATCACAACAGAAAGCAATGagctaaaaatcaaaaaggagCAGCACAGTCCACTGGATCTGAACGTGCTCAGTCCACAGTCGGCCctagcagctgctgccgcagCCGCAGCCGCCGCTGCGTGCGCCAATGATCCGAACAAATTCCAAGCGCTGCTATTGGAACGCACCAAGGCATTGGCAGCCGAGGCACTTAAAAATGGAGCCAGCGATGCCAGCAATGCAAATAGCGATGAACAACAACGTGCAACAGACGCAGCAACAGCTGAtcatgtggcagcaacagatgaaaaagaagatgatgatgaagaagaagaagtagcagcagcaacagcagtcaAGCCACAGTCACAGCCACAAGAAACAAGCAAAATTGAAACGGAAAcgaatgaaattgaaacattGCCCGATGCCAATTTGCAGCCAAAAGTTGAAATCATCGATGATAACGATACCGATAACGATACCGATGGCAACCCTGCCACGGGGGTAGCTGAGTTGGTCAATAGCTATTGGAGGCGTGGCTTTGAAGCGCcaacaccaccagcagcagcaacagttgcagttgcagctgcagcaactgGGAGCAAAACGCcaacaatttatcaaaattccAATGCggtacaacagcaactgttgccaccaccgccaccgccaccgtcacagcaacaacagcaacagcattttgccacgcaacaacaacaacaacaacaacagcaacactatcagcaacaacaacagcaacatggaCCCTCGTCCACTGTGCTGCTCAGTCAATTGGTTAACTCAACTTTCTCACATGCCAATCACTCCTCTTGTTCCAATTCCAAATCAACTCGCCTAGATGTCGGATCacaccaccaacaccagcaCAGCCAGCATCCactccagcagcagcaacagcagcaattactgcaacagcaacatcatctgaatagcagcaatagcagcaacagcagcgcgCCTGGAAGTGATGCATtgaatcatcatcatcatggaCATCATCATGGCCATGGGCATAATCAATTGTTGCATGCGTCACATCATTTGCATCACGGTGGCGACTCCAATTCATCGAGTGCCAACAGTACACCAAACAGCACAGCACAATTGGCAGCAAGCATTGCCAATACATTGAACGGCAATAAGTCGCTGTTgcaagcagcagctgctgccaatgTTGCTGCCGCCGCTGTCGCCGTTGCCGaggacaataacaacagtttGACACCAAATGCGAATGCTGCTGCCGCGGCGGCAGCAATGGCTGCACATGCCCAACATGCCGCCGTCTTGGGTGCCCCAAGTTTTTTACCCAACCTGCCCAGTTTGCCGGCATTCCAATTTGCTGCCGCCGCAGCCGCTGGACAGGATGCCCGAGCGCATTTCCGGTTTGCCGATGctgaattgcaattgcaaccgGGTGTCTCGATGGCCGGTCGATTGGGTGAATCCCTCATACCCAAAGGTGATCCCATGGAAGCAAAACTTCAAGAGATGCTCCGCTACAACATGGACAAATATGCGAATCAAGCCCTCGACACACTTCACATCTCGCGACGTGTCCGTGAACTGTTGTCGGTGCACAACATTGGACAACGGCTGTTTGCCAAATACATTTTGGGTCTATCCCAGGGCACCGTCTCCGAGCTGCTGAGCAAGCCAAAGCCCTGGGATAAACTGACCGAGAAGGGTCGTGACAGTTACCGCAAGATGCATGCCTGGGCCTGTGATGATAATGCCGTCATGCTGCTCAAATCCCTCATACCCAAGAAAGATTCTGGACTGCCACAATATGCTGGTCGTGGCGCTGGAGGCGATGATTCCATGTCTGATGATCGCATTGCCCACATACTCAGTGAGGCCTCATCCCTGATGAAGAGCAATGTGGTTGCtgcccagcaacagcaacaacaggagcaTCAACGTCGTCATGTTGCTGTCGATGATACGCACAGCAATGAGGATAGCAAATCACCGCATCAGAGTTGCACATCACCATTCTACAAGGTCGATCAGCAattgaagcaacaacagcagcaacagcaacagcagcaacagttgcatgTCTCAGAGCATGCGCAACGTGAGCAACGTGAAGCTGCTACAGCGGCAGCCGTTGCCgttcatcagcaacagcagcagcaacaacgtgAGCAACGTGAGCAACGGGAGGCAGCACAACGCGAGCAACATCAAAGATTACGTCATGAGGATTTGGCCCAAGACAAGATGGCGCGTCTTTATCAGGAGCTGATGGCACGTACACCCCGTGAAGCAACCTTCCCAAGCTTTTTGTTGTCGCCGTTCTTTGGTGGCGCCGCTGGCATgccaggagcagcagcaaatcCATTCCCCGCGGCAATGGCCGCCGATGAGAATATGCGTCATGCGTTTGAGCGGGAAATCGccaagttgcaacagcaacatcaacagcaggcGCAGGCCGCCAGTTTTCCCAACTTTTCCAGTTTGATGGCACTGCAACAGCAGGTGTTGAACGGTGCACAGGATTTGTCCCTGGCTGGCAAGGATATCAAATTGAATGGCCAACATCAAcacagtggcagcagcagcagcaaggaTGGGGAACGTGGCGATGATGATCGCAGTTTTCCAGCATTGCCACATGCTAGAAAATCGGATGGTGGCAATACACCAGCACCGCCAGCACTACCAGCACCGCCAGCACCATCGAACAGCAGCAATCCGGtggcatcagcagcagcagcagcagcagctgcagcagcagttgtCGGTAGCGGCAATCATGGCAGCAACTCAGCGGCGCCGAGTCCATTGAGCAACTCGATCTTGCCACCAGCGTTGAGCAGCCAAGGAGAAGAGTTTGCGGCAACAGCGAGTCCATTGCAACGCATGGCATCGATAACAAATTCATTGATCACCCAGCCACCAGTTACGCCGCATCACTCGCAACCACAGCGACCCACAAAGGCGGTGTTGCCACCGATAACACAACAGCAATTCGATATGTTCAACAATCTGAACACGGAGGATATTGTGCGTCGTGTGAAGGAGGCACTTTCCCAGTACAGCATCTCGCAACGGCTTTTCGGAGAGTCTGTGTTAGGACTTTCCCAGGGATCCGTCTCCGATTTACTTGCTCGTCCCAAGCCCTGGCATATGTTGACCCAAAAGGGTCGTGAACCATTCATCCGCATGAAGATGTTCCTCGAGGATGAGAATGCGGTGCATAAACTTGTGGCAAGTCAGTATAAGATTGCACCCGAGAAACTGATGCGCACTGGGAGCTACAGTGGCAGTCCACAGATGCCACAAGGATTGGCCAACAAGATGCAGGCCACACTGCCCATGCAGAAGATGATGAACGAGTTGAAGTTGCAGGAACCGGCACAGGCGCAACACATTATGCAACAGATGCAGGCAGCTGCTGCCATGTCAGCggcaatgcaacaacagcaacaggcagcTGCGGCACAAGCAGCAGCCGTTCAACAAGCTCAAGCCCAGGcccaacatcaacatcaaagtcaacaacagcaacagcatcagagtcagcaacaacaagtggcagcagcagcacagcaACAGGCACAATTGTTGCATCATCAGAACATGCTGCTCACGTCACCGGGTTTGCCACCGCAACATGCAATTAGCTTACCAGCAGCAAGTACGCCCAGTGGCCAGTCAAGTGGCAACTCTGTCGGAGGTGTGGCAACGCCAATCAGTGGGGAAAAGAAACCGATGATGATGCCGGTGGGACATGGCGGGGCACATGCCCCAAATGCAATGCGTAGCCTGCATCAGCATATGTCGCCAACGGTTTATGAAATGGCAGCCTTAACCCAAGATCTGGATACACACGACATAACCACAAAGATCAAGGAAGCTTTGCTGGCCAACAACATTGGCCAAAAGATCTTTGGCGAGGCTGTATTGGGATTATCACAGGGATCCGTCTCGGAATTGCTCAGCAAACCGAAGCCCTGGCACATGTTGTCGATCAAGGGACGTGAACCCTTCATTCGCATGCAATTGTGGTTGAGTGATGCCAACAATGTGGAACGTTTGCAACTCTTGAAGAATGAGCGCAGGGAGGCCAGTAAACGGAGACGCAGCACAGGACCAAATCAACAGGACAACAGCAGCGATACGTCCAGCAATGATACAAATGATTTCTATACGAGCAGCCCGGGACCGGGCTCTGTGGGATCATCAGTCAGCGGTGCACCACCGAGCAAGAAGCAGCGGGTCCTCTTCTCTGAGGAGCAAAAAGAAGCCCTACGTTTGGCCTTTGCCCTCGATCCGTACCCGAATGTGGGCACCATTGAGTTTCTGGCCAATGAGCTGAGTCTGGCCACACGGACAATTACCAATTGGTTCCACAATCATCGCATGCGATTGAAGCAACAGGTGCCGCACGGTCAACCCGGTCAGGATAATCCGATACCCAGTCGTGAGAATACCAATGCCACACCCTTTGATCCCGTCCAGTTTCGCATACTGTTGCAGCAACGTCTCGTCGAGTTGCATAAGGAACGCATGGGTTTAAGTGGTGCACCCATTCCATACCCACCGTACtttgcagcagctgctctCCTCGGTCGCAGCTTGGCTGGAATTCCAggtgctgctgccgccgcgggagcagcagctgctgctgccgctgctgtggGTGCAGCAGGCGGGGATGAGTTGCAGGCATTAAATCAAGCCTTCAAGGAGCAAATGAGCGGCTTGGATTTGTCCATGCCAACACTGAAACGTGAACGCAGCGATGACTATCAGGATGAATTGGAACTGGATGCCAGTGGACACAATATGAGCGATAATGAATCTATCGAGGGTTCTAGCCACGAGCCCGATAACACGCCCGTCTCCGAATACGAGAAGGCGTTGCACAAGTCCGCActtgcctctgctgctgccgccgctgccTACATGAGCAATGCGGCACGTAGTTCACGCCGTAAACCCGCTGCCCCACAGTGGGTCAATCCCGCTGGAGCTGGCACACCGACAGCAACCggagctgctgttgccgctgccgctgttgctgccgcggctgcagcagccgctgctgctgctgctgatagCAATGAGCGGATTATCAATGGTGTCTGCGTTATGCAGGCCTCTGATTATAGTCGTGATGAAAGCGACAGCATTAAAGGCTCCAATGATGCTGGCAATGATGTGGATAATGATGAGCATGCTCAGCTTGAGATTGATCAACGTTTCATGGAGCCTGAGGTGCGCATTAAGCAAGAggaggatgacgatgacgagcaacagcaacagcaactgcagcagcagcagcaacaacagcagctgccacagcagcagctacaacagcaacagttgcaggaGGACAGTGATGCGGCAGAGAAGCAATTGAAGGTGATCAATGAGGAGAAGTTACGATTGGTGCGTGTGCGACGTCTCAGCAGCAATGGAGAAGCCGAGGAGCATTGTGCGGCAGCGCAGCAAGCAGCGACGGCAGCAGTggcgccagcagcagcagcagcttggAACTACTAA
Protein Sequence
MRLTTIGAGGSSSSSSNSSSSCKLGKLSLNRFLDKNRATQAEKEVNTLKEQLSTSTPGSNSDSNSNSDNNNTTAATTTTTTATGATVAGLLNGEEEEGATGNSESECDKLLNSSIVAAAITLQQNGGNLLANTNTPSPSPPLLSAEQQQQLQSSLQNGVGGACLNPKLFFNHAQQMMMEAAAAAAAAAAAAAAAAQQQQQQQSPMHSPLAAAANNSTTQAAATTTVATNTLAATAAGDPPAAAAAAAATLAIPTHAAEATATSNCNDDDEDDDEEDASMQSNVAHADGELDDDDMELETDHVAADNSNVVAAVAAETSARTEHIADVQATQHVDDNDDDDDGDDADVADEHEEEHDDDEEASLNVSNNHNNNNTDSCSRKNNNNNNSETQHVALRDNNVNEQHVAHSAEDEDCTNNNNTNSNNNNNNTSNSNEKRKKRNATNNNNNNNNNQPAVLLAAKDKEFSLNIVKFIALSIISEIISDQIRNHPAFRLPIEFDIYSGLDLELEWELKLVLNFPYKLTSIMRNIKALLDELQRLRALEQTHLVQIQRLEEHLEVKRQHIMRLEARLDKQQINEALAEATALAAAVNAAATNNNNNNNNNSNSNINNNNNNNNNHSSQSSENNNETTTTPTTTATVFNTTTATTTDLTSSHQHNDDDDDDDDDDNDHDHDNELRDAIDDDDDMEITGNEQQHTQQQHAVVNNRHEDDNDEEEAEEQDADMSNATITTESNELKIKKEQHSPLDLNVLSPQSALAAAAAAAAAAACANDPNKFQALLLERTKALAAEALKNGASDASNANSDEQQRATDAATADHVAATDEKEDDDEEEEVAAATAVKPQSQPQETSKIETETNEIETLPDANLQPKVEIIDDNDTDNDTDGNPATGVAELVNSYWRRGFEAPTPPAAATVAVAAAATGSKTPTIYQNSNAVQQQLLPPPPPPPSQQQQQQHFATQQQQQQQQQHYQQQQQQHGPSSTVLLSQLVNSTFSHANHSSCSNSKSTRLDVGSHHQHQHSQHPLQQQQQQQLLQQQHHLNSSNSSNSSAPGSDALNHHHHGHHHGHGHNQLLHASHHLHHGGDSNSSSANSTPNSTAQLAASIANTLNGNKSLLQAAAAANVAAAAVAVAEDNNNSLTPNANAAAAAAAMAAHAQHAAVLGAPSFLPNLPSLPAFQFAAAAAAGQDARAHFRFADAELQLQPGVSMAGRLGESLIPKGDPMEAKLQEMLRYNMDKYANQALDTLHISRRVRELLSVHNIGQRLFAKYILGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWACDDNAVMLLKSLIPKKDSGLPQYAGRGAGGDDSMSDDRIAHILSEASSLMKSNVVAAQQQQQQEHQRRHVAVDDTHSNEDSKSPHQSCTSPFYKVDQQLKQQQQQQQQQQQLHVSEHAQREQREAATAAAVAVHQQQQQQQREQREQREAAQREQHQRLRHEDLAQDKMARLYQELMARTPREATFPSFLLSPFFGGAAGMPGAAANPFPAAMAADENMRHAFEREIAKLQQQHQQQAQAASFPNFSSLMALQQQVLNGAQDLSLAGKDIKLNGQHQHSGSSSSKDGERGDDDRSFPALPHARKSDGGNTPAPPALPAPPAPSNSSNPVASAAAAAAAAAAVVGSGNHGSNSAAPSPLSNSILPPALSSQGEEFAATASPLQRMASITNSLITQPPVTPHHSQPQRPTKAVLPPITQQQFDMFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDENAVHKLVASQYKIAPEKLMRTGSYSGSPQMPQGLANKMQATLPMQKMMNELKLQEPAQAQHIMQQMQAAAAMSAAMQQQQQAAAAQAAAVQQAQAQAQHQHQSQQQQQHQSQQQQVAAAAQQQAQLLHHQNMLLTSPGLPPQHAISLPAASTPSGQSSGNSVGGVATPISGEKKPMMMPVGHGGAHAPNAMRSLHQHMSPTVYEMAALTQDLDTHDITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDANNVERLQLLKNERREASKRRRSTGPNQQDNSSDTSSNDTNDFYTSSPGPGSVGSSVSGAPPSKKQRVLFSEEQKEALRLAFALDPYPNVGTIEFLANELSLATRTITNWFHNHRMRLKQQVPHGQPGQDNPIPSRENTNATPFDPVQFRILLQQRLVELHKERMGLSGAPIPYPPYFAAAALLGRSLAGIPGAAAAAGAAAAAAAAVGAAGGDELQALNQAFKEQMSGLDLSMPTLKRERSDDYQDELELDASGHNMSDNESIEGSSHEPDNTPVSEYEKALHKSALASAAAAAAYMSNAARSSRRKPAAPQWVNPAGAGTPTATGAAVAAAAVAAAAAAAAAAAADSNERIINGVCVMQASDYSRDESDSIKGSNDAGNDVDNDEHAQLEIDQRFMEPEVRIKQEEDDDDEQQQQQLQQQQQQQQLPQQQLQQQQLQEDSDAAEKQLKVINEEKLRLVRVRRLSSNGEAEEHCAAAQQAATAAVAPAAAAAWNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00583577;
90% Identity
iTF_00583577;
80% Identity
iTF_00608339;