Dtei010155.1
Basic Information
- Insect
- Drosophila teissieri
- Gene Symbol
- -
- Assembly
- GCA_016746235.1
- Location
- CM028595.1:23088574-23090351[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.074 6.4 7.3 0.1 1 23 291 314 291 314 0.96 2 8 0.49 43 4.7 0.6 6 23 324 341 324 341 0.98 3 8 6.6e-06 0.00058 20.0 0.2 1 23 347 369 347 369 0.98 4 8 8.3e-05 0.0072 16.6 1.7 1 23 384 407 384 407 0.93 5 8 0.00012 0.01 16.1 0.6 1 23 415 438 415 438 0.97 6 8 2e-05 0.0018 18.5 1.6 3 23 446 467 444 467 0.92 7 8 0.00065 0.057 13.8 0.4 2 23 479 501 478 501 0.97 8 8 0.035 3.1 8.3 0.4 1 13 508 520 508 522 0.88
Sequence Information
- Coding Sequence
- ATGACTGTCTGCCACTTTTCGTTTTCCGAGGTTCTTACAGCGGGTCGTGATGCTGAGGTCTGTCGGGAGTGCTGGGACTGCGTTAGCAGCTTCGAGGAGTTCCACCAGCGGGTCTCCTGCCTGCATCAGCAGCAGAGCAGGGATTCCAAAAGCGAACCCATCGAATTTTGCGGTCAGACGGAGGAGGCCATTAATCCGCTGTATTCTGTGGAGCTGGACGCCTTGGCGGAGGGCTTCTTTGCGCCCAGCGAGGTCAAAGTAGAGGCAAACGAGCTGGAACCCCTGCCGAAGGTGGAACTCTGGGAAGACCCAGTTAAAACGGAAATCAGAACAGCTTCGAAACGCTTGGGTGTCCCAAGCGAAGGCTCACCGCATTCGAAGCGGCGCATTAAAAACGAACTGCCAGTGGACAGTGATTCGGATGCACCTCTGGCCGATTTTCTAAACTCGGATACAAAGAGCTGTTCAATTAGTTCCGCAAAGAACAGCGAGACGAACAAGGGTCGCCCGCTACGTCGGAGTACGAGAAGAGGACGCCCGCCCAAAGCAAAGCCTGAATCCCCTACTTCTCCAAAGAAGGAGGTCGACTCCGATGATATGTTTGTGGGAGTCGACGCCGTCTTGGGCACGGAGGACAGCTCCAGTTCCTCCAGTGAGAGCAGTGGGGAGGACTCCGACCACAGCCTGCCGGACATAGAGCCGGAGGAACGCTACGCCGAGATTCCCAAGCGGAAGGTAGTTAAGCCCAAGAAGTACCAAAAACGGGAAAAGCCACTGGTTCCACCCGTTCGCCTGAGTCGCGAGGAGATTGAGCGGAGGAAGCTCCAGCAAAACGAGTACGATGAGATTATCCTGGAGTTCTTCAAAAAGTTTCCGTGCGCCGTCTGCAATCTGCTGGTGCAGAACTTTGGGGACATGCGACGCCATCAACGCGTTTCCCACAACATCGAATCTGGCTTCATCGAATGCTGCGGCAGAAAGTTCCACCTGCGCAAGACTTTGGCGGAGCACGTGCTGGTCCACAAGAATCCAGAACACTTTACGTGCTCCCAGTGCGGGCGCGTGTTTCCGGACTCGCGCTCCCTGGATGTTCACGAACAGACACACACAAACCCGGAGGTCAAGGCGGAGCCGAAGGAGAAGCGGGTCTATCAGTGCGAGAAATGCCCCAAGAGCTTCACCACCAAAGCGGCCATAGAGTACCACCACGTTTCCAAGCATGTCCCTAAGTCCGAGTTTAAATACTCGTGTCCAGAGTGCAACAAGAAGATTCCTACGGAACGAAAACTGAAAGAGCACTTGCGATACATGCACGACCCGGAATCGGCAATCATCTGCGATAAGTGTGGCAAGACGCTGCGTTCACAAACGAATCTCAAAAAGCATCACGAGCTGGAACATTCCGATGAACCGCGTCCCAAGCCCGATCCCGTGCAGTGCGAGATTTGCGGCACCTGGCTGCGCCATCTGTCCGGACTTAAGCAGCACATGAACACGGTGCACGAACCGCCGGGCGGCGAGCATCGCTGTCACATCTGCAACAAGACATCCACCAACTCCCGAGCCTGA
- Protein Sequence
- MTVCHFSFSEVLTAGRDAEVCRECWDCVSSFEEFHQRVSCLHQQQSRDSKSEPIEFCGQTEEAINPLYSVELDALAEGFFAPSEVKVEANELEPLPKVELWEDPVKTEIRTASKRLGVPSEGSPHSKRRIKNELPVDSDSDAPLADFLNSDTKSCSISSAKNSETNKGRPLRRSTRRGRPPKAKPESPTSPKKEVDSDDMFVGVDAVLGTEDSSSSSSESSGEDSDHSLPDIEPEERYAEIPKRKVVKPKKYQKREKPLVPPVRLSREEIERRKLQQNEYDEIILEFFKKFPCAVCNLLVQNFGDMRRHQRVSHNIESGFIECCGRKFHLRKTLAEHVLVHKNPEHFTCSQCGRVFPDSRSLDVHEQTHTNPEVKAEPKEKRVYQCEKCPKSFTTKAAIEYHHVSKHVPKSEFKYSCPECNKKIPTERKLKEHLRYMHDPESAIICDKCGKTLRSQTNLKKHHELEHSDEPRPKPDPVQCEICGTWLRHLSGLKQHMNTVHEPPGGEHRCHICNKTSTNSRA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -