Basic Information

Gene Symbol
Trerf1
Assembly
GCA_016746235.1
Location
CM028597.1:27890413-27902746[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.7e-09 2.6e-06 27.3 0.1 2 45 1571 1614 1570 1615 0.94

Sequence Information

Coding Sequence
ATGGCTGCCATAAATACGGTACCAAAGAGCATCCACCTGCCATTGACGACTCTCAGCAGCGCGCCGCGCGTGTTGATGTGCAGCGCATCCGTGGGCACCGAAGGATCCGTCACTCTGCAACTGCGTGATGCGAACGCATTGGAGGCAGCAGCCACAAAGACAGCAGCAGCAGCAGCGGCAGCCACATCGACGACGTCACCGAATGGCGCTGCAAGTGCGCCAGCGTCGACGCTAGAGAATGCGCTGACCATCGGCTATCCGGATCCGGAAATGTTGGCAGATGTCTTGGGCACCATTCAGACAGCCTCTCTCAAGAACAACAACTCAATCACAGCAGCAACTTCAAGCAATAGCTCGACCAACGTTGAGGCGCCCCGCAAAAATCGACCCAAATTATCATCGCCAACGCGTCACGGACCGCAGCAGTGTCAGATTTGTTGCAAGATCTTTGGAAATGCCTCGGCGCTGGCCAAGCACAAACTGACGCACAGCGACGAGCGGAAATACATCTGTGCGCTCTGCTCGAAGGCATTCAAGCGGCAAGATCACTTAAACGGACACATGATGACTCATCGGAACAAGAAGCCTTACGAGTGTAAGGCGGATGGCTGCGGCAAGTCCTACTGCGATGCCCGATCACTGCGGCGCCACTCGGAGAACCACCATGCCGGCGGAGCAGCCACGCCCACCACCAGCCAATCGCTTTCGCCCACCGCCAGCTCGAGCGGTGCCAGCAATAGCAGTGGTGCCGGCGTGGCCACCAGCTCCTTGAGTCTATCGCCGGCCACGGCCAGCGGAGATGCCAGCTCCCCGGACGGCGCCACCTGCATTCGAACGTACATTTCCACGGGCAGCTCGGTGGTGGACGCCGCCACCGGGATCGCCCTGTCGGACGAACAGATCAAGGCGATGAATCTGCCGATCAAGACGGGCGTCACCTTGCTGTCGCCCACCACCTCGACCTCGTCGAATGCCTCCTCCTCGGCCTCGTCCGCCAGCTCGTCGCTTTCCTCGACGGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGTCGGGTTGCGGATCGGTATCCATGCCATCCCCGTCACCGTCGAGTGGCTCAGTGATAGCCGCTAGTTCGCCCACCATCACGCTCAGCGATGGGATGAGTCTCGAGGGCGAGGGTCTCACGCGGGAGCAGTTGGATCTCATCAGCAAGATAATGCAGCAAACGAAGCAGACGAGTGCCCAGGTCACCGTCTCCTCGCCCACCAGCGTCAGTTCCTACAAGATCAACACCAACTCGTCGCCATCGCAGAACAGACCGCGCACCTGGAACATGCAATTGCTAAATAGTGCACAGAATGTGACTGTCACAGTCGAGGACAACTCTGAGCTCGCCACTCCCTCCTCCAACTCACCCGTGGAGGTCAAGGAGGAGGAGCTGAGCCCACAGCTGGTGGGCAACATGAATCCCCACCTGCTCAACATCGTGAAGCTCGACAAGCCCGTGGAGTGCAATCTCTGTCACCGCAAGTTCAAAAACATACCCGCCCTCAACGGGCACATGCGTCTGCATGGCGGCTACTACAAGAAGGATCCGGAAACCAAGCGCAGCGAGAAGAAGGACTCCAGTGGTCCGCCCCTGCAGACGGCCAGCATTGGCGTGCGCGCCCTCATCGAGGAGAAGATCATCAGCAAGCGCAAGGACATGACAAAGGGCTCCTTTGTGGTGCCGGCACCACCGCACAGCAGTGGCACCACCACCACGCTGCGGCGATCGATCAGCGACCTGGAGAGCTTCCTCAACCCGAAGACGAGCACCAGCAGTCACGCCCAGACGATGACCACCACCACGGGCACCACCACAGCGGTTCTGCCGGCGGCCACCACCATCAAGAGCAGCAACGGCCTCAGCATCCAGCAGATTGGCCTGCCGCAGAGCATCGAGATCTTCAGCGGCGGTCAGAAGCAGGCGAAGACGCTGAACCTGGGCACTGGCACCAACACGATCACGATAACCACCAACAATGTACCCACCACCACGACGATGAGTGCTCTCACTGCGCTGAAAGCGGGTGGCACCATCAGTGGCATCTCCACCGCCACCAACACGGATCCCAAGGACTCCACACTCATCGAGCTCCTGAAACGCGGCACTCGCATTGCGGTCACTTCGAAAAAGAGCCAATCCCATGGCCAGACGGGATCCAGCATAATGATGACCTCCAGCGGAGCGGCTACAAATGCAGTGGGTGCTGTCACCGAGCTGACCACCATCGGTGCCGGCGGAGGAGTGCAGACGGTGGGCCGCCAGATCATCACCAACAACAACCGCACCGTGATCATACCCTCCGATGTCCAGGTGGTGTCCACCAAGAGCAAGCTGAGCAGCTTGAGCAGTCTGGTCAAGAGCAATATGGTCGGTAGTGGCACCTGCTCCTCGGGCAATCTTTCGCTGGCCGATGGCACGCCGCTTTCCCTGACAATTGCGCCCAATCAGGAGGTCACCGGCGGTGGAGGCAACTCCGGCGGATCGGGTGGTGTGATCACGAGCGGGGGTGGTGGAGTCTACACGGTTACCTACACCAGTGATGGCACCGATCTCTTCGACGATGCCGAGGTCTACAACGTTTCGGACACCGAGATGCTGCTGCAGACGGTGGACTCCATGGAGCTGCTCAACGACGAGGAGATCAAGAGCGAACATTCCGAGGACTTTGCCCTGCTCAGCGAGGCCGGCGACAGTGCGCACACCCAGCTGGTGAAACTGGAGCCGGAAAGTGGGCAGGCCAACTCCGGAGCGGGAAGCGTATCCGGCGCCAACACCACGCCGCTGCCCACCTTCCAGCAATTCCATTCCAAGGAGCTGATCATGCAGAACAGTTCGCAGATCCAGGCGATAGCCAGCATGCGTGGAAGTGGTGGTGGCATCCTCGCCTCGCCGCTCCACTCGCCACTGGCCTATCCCACTCCGCCGTCGAGCCACGAGAACATGGCCCAGAGTTCGCCCTTCATCGAGGATGCGGCTGCCCAGTTTGTGGACGCCAGTAACACCTTCTTCGGCGACAAGACGGACTTCTCGCACATCTATTTCAAAACGGATGAGGGGGAGGCCACCATTGAACAGCTGAACGAGCACGACAACGAGAAGATCCTGAAACTGAAATCGGTGCTGGAGGAGAGCAGCTTCGATCCCTCGATCAAAGTGGAGGACCTGCTGAATGGCACAGACGATGACACGGAGTGCGATCTGCGGGAGTTTGCCGAGACTAATCTGTCGTTTCTGGACGAGGATCAGGAGTTCCTCAATGACTCGAGGAACGCCACCTCACCGCTCTCGGAATCCTTCTTCACCAGCGGCATCGGCTCCGCGGAGGATGTGAAGCAGGTGTTGCGAGAAGTCCTGCCCGATGAGAACATGCAGCTGCAGCTGAGCAGCGAGCAGCAGGGCGAGAACATCATCGATCTCTACTATCTGCCTGGCCTGGGCCTGCAATCCCAGATGATGCCCAATTCGGAGGACCCGCTGCTCTCCTCCTCGCCGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCCCCTGGTGGGTGGTCATGGATTCAGCCAAGTTACCAGCCAAACACAATACATTGATGGCAGCCAGGGCGGCATGGGGATGCAGCCCCTCAACAGCCTGCTGCAACCACTGCTCTATGGTGGGGCAAGCACATCCAATGGCAGCGCCTCGGCCGGGGGCAACGAATCTCTGCTCACCACCGATTGTCAAATGAATGCCAATCCAGGCCAGATCGATACGGGCCTGTTGTTCGCCTGTGGCAACACGACAACCATGACAGCCCACAAATCCCTGGCGGCTCTCGTGCCAAGTCCGCCGAGTGTGGCTAATCTGCAGCCCTTGTCCAACCAAACCAATTCCATTCTGAAGCGCCGCCTGCGCTCCAATGCGCCCCAGGAGACGCACAAGTTCTCCAAGTTCCACACCCTGTCGCCGCATCGTTCCAAGCTGCGCAAGCCATCACGTACCCACTATACGCCCGCACCCATTCTCAATCCGGATCGCAAGGGCACCGGGCTCTACTGCAATGTGCGCAAGCAACTGGGTCAGGGTTTGTTCGACGCCTTCGACGATGACTTCGGGGACTCGGTGGGCCTGGTGGACTTCTCGGACGAGTCCAAGGTGAACTTGGGCTCCACCTACCAGGCGCAGATACCCAGCTGCCGGCCGCTGGAGGAGGCATCGCGCGAGTCTGCGGGCGCCGAGTTGATGTGGAATCCCGAGGTGCAGGAGGACGAGAAGATACTGATGCGCTACATTGATCTCAGCAAGTCGTCGGCCGTGCCCATGGGCAGTCATTCCGAGGAGGTGGCGCTCCAAACGCTGCTGCGGGCCAAAGGAAACTCGGCGGCGGCTGTGCTCAGTCTACTCCAAACGCAGTCCGGCGCCTTCCAGATGAAGTGGACCGCCTACGAGCTGGAGCAGTTCTTGCGCGGACTGGAAAAGAATGGCAAGGACTTTGGCAAGATCGCCAGTGAGCTGCAGACGAAATCCTCCGGCGAGTGTGTGCAGATGTACTACTTCTGGAAGAAGCTGTGCGTGGACTACAAGGTGACGCACTTGAAGATGGAGCCCGTGGTGGTGATTGCTCCCCCGGTGGAGAAGCCCTATGTCTGCGAGATCGCCGACTGTTCAGCGAGCTTCAGTTCGAAGGCGGCGCTGCACGGCCATGTCCGCATACACGCTTATGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTTCGACCACGCCCAAATTGGAGGCGGGCATGGGCGGTGCCACGAACATAGCCATTGCCAAGGAGGGCGAGTTCCCCTGCAAGGTGTGCGGCAAAGTCTTCAATAAGGTGAAGAGTCGCAGTGCGCACATGAAGACGCACCGCGTCCAGGAGCCGGACCAGAAGCACCAGCTGAACCACCAGGCTGGAGCCGGCCACCTGGCCACCGTCGCCTCATCAACCATAACCGCACCATCGTAG
Protein Sequence
MAAINTVPKSIHLPLTTLSSAPRVLMCSASVGTEGSVTLQLRDANALEAAATKTAAAAAAATSTTSPNGAASAPASTLENALTIGYPDPEMLADVLGTIQTASLKNNNSITAATSSNSSTNVEAPRKNRPKLSSPTRHGPQQCQICCKIFGNASALAKHKLTHSDERKYICALCSKAFKRQDHLNGHMMTHRNKKPYECKADGCGKSYCDARSLRRHSENHHAGGAATPTTSQSLSPTASSSGASNSSGAGVATSSLSLSPATASGDASSPDGATCIRTYISTGSSVVDAATGIALSDEQIKAMNLPIKTGVTLLSPTTSTSSNASSSASSASSSLSSTGXXXXXXXXXXXXXGSGCGSVSMPSPSPSSGSVIAASSPTITLSDGMSLEGEGLTREQLDLISKIMQQTKQTSAQVTVSSPTSVSSYKINTNSSPSQNRPRTWNMQLLNSAQNVTVTVEDNSELATPSSNSPVEVKEEELSPQLVGNMNPHLLNIVKLDKPVECNLCHRKFKNIPALNGHMRLHGGYYKKDPETKRSEKKDSSGPPLQTASIGVRALIEEKIISKRKDMTKGSFVVPAPPHSSGTTTTLRRSISDLESFLNPKTSTSSHAQTMTTTTGTTTAVLPAATTIKSSNGLSIQQIGLPQSIEIFSGGQKQAKTLNLGTGTNTITITTNNVPTTTTMSALTALKAGGTISGISTATNTDPKDSTLIELLKRGTRIAVTSKKSQSHGQTGSSIMMTSSGAATNAVGAVTELTTIGAGGGVQTVGRQIITNNNRTVIIPSDVQVVSTKSKLSSLSSLVKSNMVGSGTCSSGNLSLADGTPLSLTIAPNQEVTGGGGNSGGSGGVITSGGGGVYTVTYTSDGTDLFDDAEVYNVSDTEMLLQTVDSMELLNDEEIKSEHSEDFALLSEAGDSAHTQLVKLEPESGQANSGAGSVSGANTTPLPTFQQFHSKELIMQNSSQIQAIASMRGSGGGILASPLHSPLAYPTPPSSHENMAQSSPFIEDAAAQFVDASNTFFGDKTDFSHIYFKTDEGEATIEQLNEHDNEKILKLKSVLEESSFDPSIKVEDLLNGTDDDTECDLREFAETNLSFLDEDQEFLNDSRNATSPLSESFFTSGIGSAEDVKQVLREVLPDENMQLQLSSEQQGENIIDLYYLPGLGLQSQMMPNSEDPLLSSSPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPLVGGHGFSQVTSQTQYIDGSQGGMGMQPLNSLLQPLLYGGASTSNGSASAGGNESLLTTDCQMNANPGQIDTGLLFACGNTTTMTAHKSLAALVPSPPSVANLQPLSNQTNSILKRRLRSNAPQETHKFSKFHTLSPHRSKLRKPSRTHYTPAPILNPDRKGTGLYCNVRKQLGQGLFDAFDDDFGDSVGLVDFSDESKVNLGSTYQAQIPSCRPLEEASRESAGAELMWNPEVQEDEKILMRYIDLSKSSAVPMGSHSEEVALQTLLRAKGNSAAAVLSLLQTQSGAFQMKWTAYELEQFLRGLEKNGKDFGKIASELQTKSSGECVQMYYFWKKLCVDYKVTHLKMEPVVVIAPPVEKPYVCEIADCSASFSSKAALHGHVRIHAYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSTTPKLEAGMGGATNIAIAKEGEFPCKVCGKVFNKVKSRSAHMKTHRVQEPDQKHQLNHQAGAGHLATVASSTITAPS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00605509;
90% Identity
iTF_00607948;
80% Identity
iTF_00607948;