Basic Information

Insect: Drosophila tani
Gene Symbol: Trerf1
Assembly: GCA_008042535.1
Location: VNJO01004425.1:41788-52100[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.045 3.9 8.4 1.7 2 23 335 356 334 356 0.97

2 6 4.2e-06 0.00036 21.1 1.3 1 23 362 384 362 384 0.98

3 6 0.00041 0.036 14.8 2.5 1 23 390 414 390 415 0.94

4 6 0.00069 0.06 14.1 0.8 2 23 692 713 691 713 0.97

5 6 0.0019 0.17 12.7 0.1 1 23 1871 1895 1871 1895 0.98

6 6 9.3e-05 0.0081 16.9 0.8 1 23 2026 2048 2026 2048 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.045	3.9	8.4	1.7	2	23	335	356	334	356	0.97
2	6	4.2e-06	0.00036	21.1	1.3	1	23	362	384	362	384	0.98
3	6	0.00041	0.036	14.8	2.5	1	23	390	414	390	415	0.94
4	6	0.00069	0.06	14.1	0.8	2	23	692	713	691	713	0.97
5	6	0.0019	0.17	12.7	0.1	1	23	1871	1895	1871	1895	0.98
6	6	9.3e-05	0.0081	16.9	0.8	1	23	2026	2048	2026	2048	0.98

Sequence Information

Coding Sequence: ATGTGCAGCGCCTCCGTGGGCACCGAGGGATCCGTGACTCTGCAACTGAGGGATGCGAACGCCTTGGAGGCGACGACATCAAGCTCTTCGAAGACAGCAACcagcggcggaggagcagcagcggcggcggcaggagcaggagcatcgTCCACGAATGGCGCTGCAACTGCGTCAGCGGCGACGCTAGAGAATGCGCTGACCATCGGCTATCCGGATCCGGAAATGTTGGCAGATGTCTTGGGCACCATTCAGACAGCCTCTCTTAAAAACCACAACAGCAACTCAATCACAGCAGTAACTTCAAGCAATAGCTCGGCCAAATCGGCCATTGGCAATCATTTGAGTAATCCCAATAAGATAACCATAACCAGACGCAGTGTGCAATCGGTCAGCACATCCACCAATACCACTAGCAGTAGCAACAGTagtggaagcagcagcagcagcagtagcatcacaagcagcagcagcagcaacggcagcagcagcagcaacggtaCAAAGACCAACACCAGCTACATTAAGAACTGCTtgatccgcagcagcagctgcagcaacacgGTCACCAATGTCACGACGCTGGCGCAGATTatgagcaacagcagcaccagcagcgcgGCCAGTTTACTCAAtcagcacaacaacaacagcaactgcagcaacagcagcaacttcagcaccgcctcctccgtgggcagcagcatcagcatcggcagcagccacagcaacggcagcaacagcagcagcggcagcaatagcaacagcaacgacagCAATAGTAGCACAGGCGGCGGCCACAGCCTCAGCTTCAAGAGcaacggacacggacacggacacggtcACGGCAGGCATGTGCCCAGCTCCGGAGGAGTAAGcacagcggcggcagccacTAGCAACAGCTCGAACGGGATAGGGATAGGGATTGGCGGGATCATCAGCGTTGAAGCGCCGCGCAAGAATCGCCCCAAGTTATCCTCACCGACGCGACACGGTCCGCAGCAGTGTCAGACTTGTTGCAAGATCTTTGGAAATGCCTCGGCGCTGGCCAAGCACAAACTGACGCACAGCGACGAGCGGAAATACATCTGTGCGCTCTGCTCGAAGGCATTCAAGCGGCAAGATCACTTAAACGGACACATGATGACTCATCGGAACAAGAAGCCTTACGAGTGTAAGGCGGATGGCTGCGGCAAGTCCTACTGCGACGCCCGCTCCCTGCGGCGTCACTCGGAGAATCACCATGCCGGCGGAGCGACCacgcccaccaccaccagccagCAATCGCTCTCGCCCACCGCCAGCTCGAGTGgggcgagcagcagcagcgtgggcgtggccaccaGCTCGCTGAGTCTCTCGCCGGCCACGGCCAGCGGGGATGCCAGCTCCCCGGACGGCGCCACCTGCATCCGCACCTACATCTCCACGGGCAGCTCGGTGGTGGACGCGGCCACCGGGATAGCATTGTCGGACGAGCAGATCAAGGCCATGAACTTGCCGATCAAGACGGGCGTGACCCTGTTGTCGCCCACCACCTCGACCTCGTCGAATGCCTCCTCCACGGGCTCGTCATCGTCCTCCTCCGTTTCTGCCTCGGCCTCCATCTCGTCGCTCTCCTCGGCCTCATCTGGTATTGGCCTAACGGCGGTGTCTTCGCCCTCCAGCGTGGGCACCGTGATAGCCACCAGCTCGCCAGCGCCGACCATTACGCTCAGCGATGGGATGAGCCTCGAGGGCGAGGGCCTGACCCGGGAGCAGCTGGACCTCATCAGCAAGATCATGCAGCAGACGAAGCAGACGAGCGCCCAGGTCACCGTCTCCTCGCCCACCAGCGTCAGCTCCTACAAGATCAACACCAACCAGGCGCCGTCACAGTCTAGGCCGAGGACCTGGAACATGCAATTGCTCAACAGTGCACAGAATGTAACGGTCACCGTCGAGGACAACACCGAACTGGTGGCTCCCTCTTCCAGCTCCCCCGTGGAggtcaaggaggaggagctgagtCCCCAGCTAGTGGCCGCCATCAATCCCCACCTGCTCAACATTGTGAAGCTCGACAAGCCCGTCGAGTGCAATCTGTGTCACCGAAAGTTCAAAAACATACCCGCCCTCAATGGGCACATGCGTCTCCATGGCGGCTACTACAAGAAGGATCCGGAGACCAAGCGCAGCGAGAAGAAGGACTCCAGTGGTCCGCCCCTGCAGACGGCCAGCATAGGAGTGCGTGCCCTCATCGAGGAGAAGATCATCAGCAAGCGCAAGGATATGACAAAGGGCTCCTTTGTGGTTCCCGCACCCCCACACAGCagcggcaccaccaccaccctgCGACGCTCCATCAGCGACCTGGAGAGTTTCCTCAATCCCAAGAGCAGCTCGAGTGGCCACACCCAGACCCTAAACACTGGCACGGGCACCACCACGGCGGTCCTGCCGGCGGCCACCACCATCAAGAGCAGCAACGGGCTGAGCATCCAGCAGATCGGCCTGCCGCAGAGCATCGAGATCTTCAGCGGCGGCCAGAAGCAGGCAAAGACCCTCAACCTGGGCAGTGGCACCAATACCATCACTATAACCACCAACAATGTGCCCACCACAACGACGATGAGTGCTCTGACCGCCCTGAAGGCCGGCGGCACCATTAGCGGCATTTCCACGGCCACCAACACGGATCCCAAGGACTCAACGCTAATAGAGCTCCTGAAGCGTGGCACACGGATCGCGGTCACCTCGAAGAAGGCGCAGGCCCAGTGCCAAACGACATCCGGTGTCCTGATGACCTCCAGTTCGACGGCCACGCAATCGATGGGCACCCTCACCGAGCTGACCACCATTGGCGGGAGCAGTGTCCAGGCGGTGGGCCGCCAGATCATAACGAACAACAATCGCACCGTGATCATACCCTCCGACGTCCAGGTGGTGTCCACCAAGAGCAAGCTGAGCAGCCTGAGCAGTTTGAGTAGTCTGAGCAGCCTGAGCAGTCTGAGCAGTCTGGTGAAGACCAGCACCGTCACAACCACCAGTAGTTCCACGAATaccagctgctcctccggcAATCTCTCGCTGGCAGATGGGACTCCGCTCTCGCTGACCATAGCGCCCAGCCAGGATGTGTCCGGAGGCAATGGGGTACCGAGCGGGACTGGCAGCGTGATCACcagcggaggcggtggcgtcTATACGGTGACCTACACCAGCGACGGCACCGATCTCTTCGACGACGCCGAGGTGTACAACGTGTCCGACACGGAGATGCTGCTGCAGACGGTGGACTCGATGGAGCTGCTgcacgacgacgaggaggagccgcAGATCAAGAGCGAACATTCCGAGGACTTTGCCATGCTGAGCGAGGCCGGTGACAGTGCGCACACCCAGCTGGTGAAGCTGGAGCCGGAGAGCGGGCAGGCCAACGGCGGCAACTCCtccgcaggaggaggaggagcgggagcCAACACCACGCCGCTGCCCACCTTCCAGCAATTCCATTCCAAGGAGCTGATCATGCAGAACAGTTCGCAGATCCAGGCGATAGCCAGCATGCGGTCAAGTGGAGCAGGATCCGGAGCAGGAACTGGCAATGGCAGTGGCGTCCTGGCCTCGCCGCTCCACTCGCCGCTGGCCTATCCCACGCCGCCGTCGAGCCACGAGAACATGGCCCAGAGCTCGCCGTTCATCGAGGATGCGGCCGCCCAGTTCGTGGACGCCAGCAACACCTTCTTCGGCGACAAGACGGACTTCTCGCACATCTACTTCAAGACGGACGAGGGCCAGGCCACCATCGAGCAGATGAACGAGCACGACAACGAGAAGATCCTCAAGCTCAAGTCGGTGCTGGAGGAGAGCAGCTTCGATCCCTCCATCAAGGTGGAGGACCTGCTCAACGGCACCGACGACGACACCGAGTGCGATCTGCGAGAGTTTGCCGAGACAAATCTCTCCTTTCTGGACGAAGACCAGGAGTTCCTCAACGACTCTCGCAATGCCACCTCCCCGCTCTCGGAGTCTTTCTTCACCAGCGGCATTGGCTCGGCGGAGGATGTGAAGCAGGTCCTGCGGGAGGTACTCCCGGATGAGAACATGCAGCTCCAGCTGAGCAGCGAGCAGCAGGGCGAGAACATCATCGATCTCTACTACCTGCCGGGGCTGGGACTGCAGTCCCAGATGATGCCCAACTCGGAGGACCCCTTGCTGTCCTCGTCGCCCAGGGAGtttggccagcagcggcagcagatgAGCAGCATCCAGCCcttggagcagcagctccagcagaaTGGCAACCTCTACCAGCCacagcaacaggagcagcagcagcagacgcagcagctccaggagcagcaacagcagccccagcaggacccatcccagcagcagcagcaataccAGCAGATCCTGCTGCCCCAGCAGACGGCAAATCAAGGGGAATCCCTGCCAGCAgtggtgcagcagcaggccgactTCATGCTGCCCCTGGTGGGAGGCCATGGCTTCACCCAGGTCTCCTCCGGCCAGGCCCAGTACGTGGACAATGGCCAGGGCAGCATGCAGGGAATGCAGCCCCTCAACAGcctgctgcagccgctgctcTACCAGGGAGGAGTCACCTCCAATGGcatcgccgccgcctccgGGCAAGAGGGCCTGCTGTCCACTGATTGCCAAATGAATGCCAATCAGAGCCAGACATCGACTCTGGATGCCGGACTGCTGTTCGCCTGCGGCAACaccaccacaaccacaaccagCAATGCAGCCACGACGACAATGGGTGGTAATAAATCCCTGCTAGCCTCGGGGCCCCCGCCCGGCTCTGTGTCCAACCTGCAGCCGCTGTCGAACCAAACCAATTCCATTCTGAAGCGCCGCCTGCGCTCGAGTGCGCCCCAGGAGACGCACAAGTTCTCCAAGTTCCACACGCTCTCGCCGCACCGCTCCAAGCTGCGCAAGCCCTCCCGCACCCACTACACGCCCGCCCCGATCCTGAATCCGGATCGCAAGGGCACCGGCCTCTACTGCGGCGTCCGCAAGCAGCTGGGCCTGAGCCAGGGCCTCTTCGATGCCTTCGACGATGACTTTGGGGATCCGGTGGGCCTGGTCGACTTCTCAGACGAGTCCAAGGTGAATCTGGGCTCTACTTACCAGGCCCAGATACCCAGCTGCCGGCCGCCCGAGGAGGCTGTGCGAGACTCACCCTGCGCCGAGCTGATGTGGAATCCGGAGGTGCAGGAGGACGAGAAGATCCTGATGCGGTACATTGATCTCAGCAAGTCGTCGGCCGTGCCCATGGGCAGTCATTCCGAGGAGGTGGCGCTCCACACGCTGCTCAAGGCCAGGGGCAACTCGGCGGCAGCGGTGCTCACCCTGTTGCAGACGCAATCAGGAGCCTTCCAGATGAAGTGGACGGCCTACGAGCTGGAGCAGTTCCTGCGGGGCCTGGAGAGGCATGGCAAGGACTTTGGCAAGATTGCCAGCGAGCTCCTCACCAAGTCCTCCGGCGAGTGCGTGCAGATGTACTACTTCTGGAAGAAGCTCTGCGTGGACTACAAGGTCTCGCACCTGAAGATGGAGCCCGTGGTGGTGATCACGCCCGCCGTGGAGAAGCCCTATGTCTGCGAGATAGCCGACTGCTCAGCGAGCTTCAGTTCGAAGGCGGCGCTGCACGGTCATGTCCGCATTCACGCTTATGGTCGCAGCAACAGTAGCAACACcagcaatggcaacaacaacagcaccagcggcagcagcagcagtaacaataatagcaacaataaCCAGCATGGCACGGCCACTAGTGTGAATAGTAGCGGCGGCAACCCCAgtagcagcaacaccaacaacatcagcagcagcaacctcaACGGCAACATCAACGGCAGCAACTTTacctgcaacaacagcagcagcaataatcCCGCCAGCAATGCAGCAactccagcaggagcaggagcagcacatGCCGCTTGCAATCCGAATCCTGGCACAACGACTGGAGCGGCCACCGCAATCTCGGCCACGTCCAAGCCGGAACAGGGAATTAACGCCATACCAGGTGCCGCCAAGGAGGGCGAGTTTCCCTGCAAGGTGTGCGGCAAGGTCTTCAATAAGGTGAAGAGCCGCAGTGCGCATATGAAAACCCATCGTGTCCAGGAGCCGGATCAGAAGCACCAGCAGCTCAATcaccaggcagcagcaggaggagcagctgcatcaGCTCTGGCCACCGTCGCCGCATCAAGCATCACCACTTCGTCGTAG
Protein Sequence: MCSASVGTEGSVTLQLRDANALEATTSSSSKTATSGGGAAAAAAGAGASSTNGAATASAATLENALTIGYPDPEMLADVLGTIQTASLKNHNSNSITAVTSSNSSAKSAIGNHLSNPNKITITRRSVQSVSTSTNTTSSSNSSGSSSSSSSITSSSSSNGSSSSNGTKTNTSYIKNCLIRSSSCSNTVTNVTTLAQIMSNSSTSSAASLLNQHNNNSNCSNSSNFSTASSVGSSISIGSSHSNGSNSSSGSNSNSNDSNSSTGGGHSLSFKSNGHGHGHGHGRHVPSSGGVSTAAAATSNSSNGIGIGIGGIISVEAPRKNRPKLSSPTRHGPQQCQTCCKIFGNASALAKHKLTHSDERKYICALCSKAFKRQDHLNGHMMTHRNKKPYECKADGCGKSYCDARSLRRHSENHHAGGATTPTTTSQQSLSPTASSSGASSSSVGVATSSLSLSPATASGDASSPDGATCIRTYISTGSSVVDAATGIALSDEQIKAMNLPIKTGVTLLSPTTSTSSNASSTGSSSSSSVSASASISSLSSASSGIGLTAVSSPSSVGTVIATSSPAPTITLSDGMSLEGEGLTREQLDLISKIMQQTKQTSAQVTVSSPTSVSSYKINTNQAPSQSRPRTWNMQLLNSAQNVTVTVEDNTELVAPSSSSPVEVKEEELSPQLVAAINPHLLNIVKLDKPVECNLCHRKFKNIPALNGHMRLHGGYYKKDPETKRSEKKDSSGPPLQTASIGVRALIEEKIISKRKDMTKGSFVVPAPPHSSGTTTTLRRSISDLESFLNPKSSSSGHTQTLNTGTGTTTAVLPAATTIKSSNGLSIQQIGLPQSIEIFSGGQKQAKTLNLGSGTNTITITTNNVPTTTTMSALTALKAGGTISGISTATNTDPKDSTLIELLKRGTRIAVTSKKAQAQCQTTSGVLMTSSSTATQSMGTLTELTTIGGSSVQAVGRQIITNNNRTVIIPSDVQVVSTKSKLSSLSSLSSLSSLSSLSSLVKTSTVTTTSSSTNTSCSSGNLSLADGTPLSLTIAPSQDVSGGNGVPSGTGSVITSGGGGVYTVTYTSDGTDLFDDAEVYNVSDTEMLLQTVDSMELLHDDEEEPQIKSEHSEDFAMLSEAGDSAHTQLVKLEPESGQANGGNSSAGGGGAGANTTPLPTFQQFHSKELIMQNSSQIQAIASMRSSGAGSGAGTGNGSGVLASPLHSPLAYPTPPSSHENMAQSSPFIEDAAAQFVDASNTFFGDKTDFSHIYFKTDEGQATIEQMNEHDNEKILKLKSVLEESSFDPSIKVEDLLNGTDDDTECDLREFAETNLSFLDEDQEFLNDSRNATSPLSESFFTSGIGSAEDVKQVLREVLPDENMQLQLSSEQQGENIIDLYYLPGLGLQSQMMPNSEDPLLSSSPREFGQQRQQMSSIQPLEQQLQQNGNLYQPQQQEQQQQTQQLQEQQQQPQQDPSQQQQQYQQILLPQQTANQGESLPAVVQQQADFMLPLVGGHGFTQVSSGQAQYVDNGQGSMQGMQPLNSLLQPLLYQGGVTSNGIAAASGQEGLLSTDCQMNANQSQTSTLDAGLLFACGNTTTTTTSNAATTTMGGNKSLLASGPPPGSVSNLQPLSNQTNSILKRRLRSSAPQETHKFSKFHTLSPHRSKLRKPSRTHYTPAPILNPDRKGTGLYCGVRKQLGLSQGLFDAFDDDFGDPVGLVDFSDESKVNLGSTYQAQIPSCRPPEEAVRDSPCAELMWNPEVQEDEKILMRYIDLSKSSAVPMGSHSEEVALHTLLKARGNSAAAVLTLLQTQSGAFQMKWTAYELEQFLRGLERHGKDFGKIASELLTKSSGECVQMYYFWKKLCVDYKVSHLKMEPVVVITPAVEKPYVCEIADCSASFSSKAALHGHVRIHAYGRSNSSNTSNGNNNSTSGSSSSNNNSNNNQHGTATSVNSSGGNPSSSNTNNISSSNLNGNINGSNFTCNNSSSNNPASNAATPAGAGAAHAACNPNPGTTTGAATAISATSKPEQGINAIPGAAKEGEFPCKVCGKVFNKVKSRSAHMKTHRVQEPDQKHQQLNHQAAAGGAAASALATVAASSITTSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00572137;
90% Identity: iTF_00606247;
80% Identity: iTF_00606247;