Dtan012778.1
Basic Information
- Insect
- Drosophila tani
- Gene Symbol
- -
- Assembly
- GCA_008042535.1
- Location
- VNJO01003685.1:88346-91808[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7.7 6.7e+02 1.4 1.7 8 23 190 206 180 206 0.63 2 13 0.013 1.1 10.1 0.3 1 23 212 235 212 235 0.97 3 13 5.9e-05 0.0051 17.5 5.1 1 23 240 263 240 263 0.94 4 13 4.9e-05 0.0043 17.7 2.1 1 23 268 290 268 290 0.98 5 13 1.2 1.1e+02 3.9 3.7 1 23 296 320 296 320 0.95 6 13 0.0013 0.11 13.3 6.2 3 23 331 351 330 352 0.94 7 13 0.005 0.44 11.4 0.2 1 23 358 381 358 381 0.95 8 13 0.011 1 10.3 0.1 2 23 392 414 391 414 0.93 9 13 0.00037 0.033 14.9 0.3 1 23 442 464 442 464 0.97 10 13 8.6e-06 0.00075 20.1 4.0 1 23 471 493 471 493 0.97 11 13 0.00046 0.04 14.7 0.1 2 23 500 521 500 521 0.97 12 13 0.0005 0.043 14.5 0.8 1 23 528 550 528 550 0.99 13 13 0.00014 0.012 16.3 3.7 1 23 556 579 556 579 0.98
Sequence Information
- Coding Sequence
- ATGGAAACGTGTCGCACCTGTGCGATTTCCATGTTTGTGTGTGACTTCGAAAATGGCAGCAACAACTTCCTGGACCTCTACCATTCCAACTGCTGGCCAAGCGAAATGGCCCAAATACGGCAGCAGTTCCTCAACTGGAATCTAAAGATCTCACCTAATGACGGACTGCCTCAGAAGATATGCAGCGACTGCTTTACCAAGTTCTGCTCCATCAACGCCTTCCGAGTGGCCTGCCAGGAGGCCCAAGTGAAGCTCTCTAATATTTACGACAAGATCGATGCCAGCAGCTTGGAGGATGAGCAGCAGGAGGACTCGGACCAAGCAGAGGATCCTCAAGGAACGGGAACAAccataacaacagcaacaacaacaacaacgatggTTTCAGACGAAACACAACCAACAAACACTGCCACTGATCCCATACAGATTTTTGTGGATGCCCTAGACATCGAAGTggaagaggagcaggaagCAGAGGAAGCTGAGGAGGAGCAACCACCGGAGGAATCTGCCCCCCCGGAACTGACCATTAGCTATGCGTGCAAGTTTTGCCTGCAGCCGCAGGAGAGCTACCAGCTGCAGCAACATTTGCTGGAACACATCAATACCTGCCACGATCCGGAGCAGCCGTACAATTGTTCGGAGTGCGAGGCGCGATTTCAGGATGCCGCCTCCCGCACGGTGCACCTCAAGAGCTATCACGTGGCGAAGCAGCATGCCTGCGAGGTGTGCGGCAAGAAGTATAGCGATCGGCACAATCTGCGCCACCACGTCGAGAAGTACCATTCGGAGACGGACTTCGAGTGCGGCCTGTGCGAGAAGCGTTTTTTCACGCGGAAGAGTCTCAACTATCACATGAAGTGGCACAATCCGGAGCGCCAGTTCAAGTGCCGCCAGGCCGGCTGCGAGCGTCTGTTCATCAGCCAGAGGCACCTCAAGTGCCACGAGGCCACGCACACGGGCACCAGTGCCAGGAAGAGCGAGCACTGCGGCTTCTGTGGGAAGACTTTCATACACCTGAAGACCCTGCGCTGGCACATCTACCGTCACCATGGCGGCGAGAAGCCCTTCAAGTGTGCCAACTGCACGGAGGTGTTCGCATCATATGCGGAGAAACGGATCCATATGCTGGAGCAGCACAGGGAGAACTTGACGGCCATCGAGCGGAGTGAGTGCATGCTGTGCCGTCAGGCCTTTACCAGCGAGCAGGATCTGGTCATGCACATGTCCGGAGAGCACCTGCACCAGCCGGGGGCTCCGGTGATTGCCAACAACAAGCGCGTGGTGCAGCAGAAGCGGGAGCGCCAGTACTCCGGGCTTTTCCAGTGCGGCAGCTGCACTCAGCGATTCAACATGAAATCGGCACTGGAACGGCATGCTGCTGTCCATTCGGAAAAGGATCGACCGCACGCCTGTCCGCACTGCTCGAAGAGATTCAAGCGGGCCCAGGACATGAAGTGGCACATCAAGACGCACGAGAAGGAGAAGCCCAATGTGTGCGACGTCTGTGGCAAGGGCTTCGCCCTGAAGTATGTGCTCACTCAGCATCGCTTGAGCCACGAGATCTTGGAGAAGAACTTCAAGTGCAACGTTTGCGGTCGCGCCTATCTGTTTGAGAAGTCTCTGCGGCTCCATCAGCGGGTTCACACCGGCAAAACCTACTACAAATGCGATCTCTGCCAAGAACGATTTGTCACGCACATCAAGCTGAAAACTCACATGCAAAAGACACACACCTCTCAGCCGAACATTGCGGACCCTTTGGATGATTTGATAAACATTGTGATTTCCTAG
- Protein Sequence
- METCRTCAISMFVCDFENGSNNFLDLYHSNCWPSEMAQIRQQFLNWNLKISPNDGLPQKICSDCFTKFCSINAFRVACQEAQVKLSNIYDKIDASSLEDEQQEDSDQAEDPQGTGTTITTATTTTTMVSDETQPTNTATDPIQIFVDALDIEVEEEQEAEEAEEEQPPEESAPPELTISYACKFCLQPQESYQLQQHLLEHINTCHDPEQPYNCSECEARFQDAASRTVHLKSYHVAKQHACEVCGKKYSDRHNLRHHVEKYHSETDFECGLCEKRFFTRKSLNYHMKWHNPERQFKCRQAGCERLFISQRHLKCHEATHTGTSARKSEHCGFCGKTFIHLKTLRWHIYRHHGGEKPFKCANCTEVFASYAEKRIHMLEQHRENLTAIERSECMLCRQAFTSEQDLVMHMSGEHLHQPGAPVIANNKRVVQQKRERQYSGLFQCGSCTQRFNMKSALERHAAVHSEKDRPHACPHCSKRFKRAQDMKWHIKTHEKEKPNVCDVCGKGFALKYVLTQHRLSHEILEKNFKCNVCGRAYLFEKSLRLHQRVHTGKTYYKCDLCQERFVTHIKLKTHMQKTHTSQPNIADPLDDLINIVIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00491676;
- 90% Identity
- iTF_00491676;
- 80% Identity
- -