Dtak014506.1
Basic Information
- Insect
- Drosophila takahashii
- Gene Symbol
- -
- Assembly
- GCA_018152695.1
- Location
- JAECXN010000001.1:12713523-12715376[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00032 0.02 15.1 3.8 1 23 177 200 177 200 0.96 2 9 0.00019 0.012 15.8 4.4 1 23 228 251 228 251 0.97 3 9 0.74 46 4.6 0.0 1 23 258 281 258 281 0.92 4 9 1.8e-05 0.0011 19.1 2.6 3 23 286 306 285 306 0.97 5 9 0.0024 0.15 12.4 1.4 3 23 314 336 312 336 0.94 6 9 4e-06 0.00024 21.1 2.0 1 23 342 364 342 364 0.98 7 9 1.2e-05 0.00072 19.7 0.7 3 23 372 392 370 392 0.97 8 9 0.00053 0.033 14.4 3.4 1 23 398 420 398 420 0.94 9 9 0.00014 0.0084 16.3 0.0 1 23 426 448 426 448 0.98
Sequence Information
- Coding Sequence
- ATGCTCAAGTCGCTCAAGCCGGACACGTACGCCGGCATGGCGAACGCCAAGTGCGGCGAGATCTACTTCCAGAGCCTGCACAGCTTCCGCATCGACTGCGTCTTCTGCGAGATGAAGAGCTTCGTGTTCGGCGACTTCCTGCTCCACGTCCAGAATGTCCACTTTGAGAACGGGCTGCTCAAGACGGAGGCGGCGGATCTGAAGCAGGAGCGGGATAGGGAAAGGGATAGGGAACCCAATTCGCCCGTGCCCATTGTGGCGCAGGTGAATCCCTTTGCCTGGTACGAGATTGGCGGCGAAAGCGAGGACGAGGATGAGCGGGGCTCCCTGGGGCAGCAGCATGACGAAGACGAGGAGGAGGAGGAGGCGGAGGAGCAGCCGACCATCATCAAGTGGCAGGTGGAAACCAGCGAATCCCTGCGCCAGGTTAGAGCCCTAAAAGTGGACTACAAGGAGGAGGACTCCGAGCAGGAGGAGCCGCACTCCATGATCAAACCGGATCCGGATAGCGAGAGCCGGAAGACGCCCCACTCCTGTCCGCACTGCACGAAGGTCTACCAGAGCCGCAAGGTCCTCGAGCGGCACATAATGCGCCAGCACAAGGAGCTCGCCGCCGCCGCCGCCTCGGACAGCGAGGATGGCGACTACGAGCTGCCCTCCTCTTCCGCCGCCGCCCAGGAGCACAAGTGCGAGCATTGCGGCAAGATCTACCAGGGAAAGAACAGCTTGAGGCAGCATTTGAAGCGGGATCACGAGAATGGCAGCACCACCTTCACCTGCCTGGAGTGCGAGGCCCAGCTGCCGCGTCTGCGCCTGCTGGACGAGCACATGGTGCAGGCGCACGGAGGAGCAGCCTGCGTGGTCTGCGGACGACGCTACAAGACGCGCCACGAGCTGAAGCGCCACCAGCTGAAGCACACCAGCGAACGGAACGTGCCCTGCCCGCATCCCGGCTGCGGCAAGCGCTTCTTCACCGTGCGCCACATGCGCAATCACGGCAAGGTGCACACGGAGCAGAAGAACTTTGTCTGCGAGAGCTGCGGCTACAGCTGCCGGAACAAGGAGACGCTGCGCGTTCACATAAGGAGTCACACGGGCGAGCGACCCTTTGGGTGTCAGGTGTGCGACAAGCGGTTCCCATCGCACTCGGGTTTAAGGGAACACATGGCCATGCATTCCACCGAGCGACCGCATGTGTGCAGCGTCTGCGGGGCGACCTTCTCGCGGCAGAAGGGCCTCTATCACCACAAGTTCCTGCACGCGGACACCAAGCAGTTTGTGTGCAAGCTCTGCGGGAATGCCTACGCCCAGGCGGCGGGACTCGCTGGCCATATGCGCAAGCACCGGAACGACGAGCTCAACGGTTAG
- Protein Sequence
- MLKSLKPDTYAGMANAKCGEIYFQSLHSFRIDCVFCEMKSFVFGDFLLHVQNVHFENGLLKTEAADLKQERDRERDREPNSPVPIVAQVNPFAWYEIGGESEDEDERGSLGQQHDEDEEEEEAEEQPTIIKWQVETSESLRQVRALKVDYKEEDSEQEEPHSMIKPDPDSESRKTPHSCPHCTKVYQSRKVLERHIMRQHKELAAAAASDSEDGDYELPSSSAAAQEHKCEHCGKIYQGKNSLRQHLKRDHENGSTTFTCLECEAQLPRLRLLDEHMVQAHGGAACVVCGRRYKTRHELKRHQLKHTSERNVPCPHPGCGKRFFTVRHMRNHGKVHTEQKNFVCESCGYSCRNKETLRVHIRSHTGERPFGCQVCDKRFPSHSGLREHMAMHSTERPHVCSVCGATFSRQKGLYHHKFLHADTKQFVCKLCGNAYAQAAGLAGHMRKHRNDELNG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00529751;
- 90% Identity
- -
- 80% Identity
- -