Basic Information

Insect: Drosophila suzukii
Gene Symbol: pita
Assembly: GCA_013340165.1
Location: WWNF01000003.1:5795278-5802386[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00069 0.047 14.0 0.1 1 23 291 313 291 313 0.96

2 10 2.6e-05 0.0018 18.5 3.4 1 23 319 341 319 341 0.94

3 10 1.8e-06 0.00012 22.2 2.7 1 23 347 369 347 369 0.99

4 10 0.041 2.8 8.4 0.3 1 23 375 397 375 397 0.96

5 10 0.0001 0.007 16.6 0.3 1 23 403 425 403 425 0.95

6 10 5e-06 0.00034 20.8 0.8 1 23 431 453 431 453 0.94

7 10 4.3e-05 0.0029 17.8 4.8 1 23 459 481 459 481 0.98

8 10 0.00022 0.015 15.6 0.6 1 23 489 511 489 511 0.98

9 10 2.1 1.4e+02 3.1 0.0 2 23 517 538 516 538 0.91

10 10 0.051 3.5 8.1 3.8 1 23 544 567 544 567 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00069	0.047	14.0	0.1	1	23	291	313	291	313	0.96
2	10	2.6e-05	0.0018	18.5	3.4	1	23	319	341	319	341	0.94
3	10	1.8e-06	0.00012	22.2	2.7	1	23	347	369	347	369	0.99
4	10	0.041	2.8	8.4	0.3	1	23	375	397	375	397	0.96
5	10	0.0001	0.007	16.6	0.3	1	23	403	425	403	425	0.95
6	10	5e-06	0.00034	20.8	0.8	1	23	431	453	431	453	0.94
7	10	4.3e-05	0.0029	17.8	4.8	1	23	459	481	459	481	0.98
8	10	0.00022	0.015	15.6	0.6	1	23	489	511	489	511	0.98
9	10	2.1	1.4e+02	3.1	0.0	2	23	517	538	516	538	0.91
10	10	0.051	3.5	8.1	3.8	1	23	544	567	544	567	0.91

Sequence Information

Coding Sequence: ATGGCCGAGAAACTAGAGGCTCGCGAGGCGCTGATGACCGAAAAGAAGGTCTGCCGCTTTTGTCTGACGGAGCAGAAGTTGGCCTCGATTTTCGAGGAAAACTCGCGTGTGAAGACCACCGCCAATCTTCCCCTGCAGATCATGGCCATCACGGCGATCGAGGTCTATGCCGGTGATGGAATGCCTGGGCATATCTGCCTAGAATGTCGTCTACTCTTTGAGCACTGCTACCGTTTCAAGCAGATGTGCAAGAGGGCGGAAACCCTCCTCCGGCAATACCCATTGACCGGAAACTGGCCCGCGCCGCTGGAGAAGCCCCGTGCTCCCATAATGACGGTGGCTCCCAAGAAGGTGGTGGTCATACCGGCTGCAGCGCCATCCGAGGCATCCGCTGCCGAAGCTCCCAAAAAACTGCTGAACACCATGGCCAAGTCGAACCCGGTGGTCATCGAGAATGTCCAGGTGCTGGAGACCACCTTGTTGCCCCACAGGAAGGTAGCCGTCTCCTCTCCAGTCACCACCAGTCGCCGATCCCATGCCTACGAGCTGAAGGTGGAGAACAACCAGGAGCTCTCCATGGACGATGTGCAGAACATGCTGGAGGACATGGCCAACGAACTGGACAAGGAGTTCGAGTCTGAGTCCACTCCCAAGACATCACCCGTGAAACCAAAGGTGTTGAACAAGTCGTCGATTCGGATCCTTAACAAGGGACCCTCTGCCCCGGTGGAACCTCGCTTGGCCACGCCCCAAGTCAAGCGAGATGACAGCGGCAATGTGGCCATAGTGACCGAGGTTCTGGATGCGGAGCTGCCATTAGACGATCAGGATGATCCCACGAAGAATGCCGAGACGGTGGCCACCGACGTGTTTCCCTGTCCCGATTGCGAGCGCTCCTTTccgctgcagcagctgctcgATATCCATCGGCTGAATCACACGCGCTCGCGCAGCTTCCAGTGTCCTCACTGCGAGAAGAGCTTCTTCTCCAAGTATGACCTGGCCAAGCACAATTTCATCCACACCGGCGAGCGGCCCTTCAAGTGCGCCGTCTGCAACAAGGGCTTCACTCGGAAGGCACTGCTCCATCGCCACGAGCGCACGCACACGGACGTGCCCAAGTTCATCTGCGTGTACTGCGAGAAGCCCTTCCTGTCGCGCCAGGAGATGGAGAAGCACGCCGAGCGGCACCAGAAGAAGCGGCCATTCCAGTGCGGCGTGTGCACCAAGTCTTTTGCCTTTAAGCAGGGATTGGAACGCCATGAGGTTGTCCACTCCACCAATCTTCCCTTCCCCTGCCAGCATTGCGAGAGGAGCTTCTCCACCGCCTCCAAGCTAGCCCGTCATCTCGTGGCCCACGCCGGCAAGAGAGCCTATCCTTGCAAGTACTGCCCCAAGTCGTACATGCTGTCCCACCATCTCTCGCGGCACCTGCGCATGCACACGCAGACCTCGGACGCCTCGTTCGTGTGCAGCGATTGCAAGATCTCGTACAGCACCTACAACAGCCTGCTGGAGCACTCGAGAATACATGCTACAGCAACTCTGAAGTGTCCCATGTGCCGGGAGCAGATCGAGGATGTGGACAGCGTTGATGCCCACATGGAGCAGCACAAGGAGAGCGAGCGTCACGCGTGCGAGTTCTGTGATCACATATTCTTGACCCAGAGCTGCCTGCAGCGGCACATCGAGGACGATCATGTGATGGACATGGAGCCGTACCACAACGACGACTTTGAGGAAGAGCTCGAGAGCAAGGAAGACGACATtatcgaggaggaggaggaagaatTGGACGAAGTAAAGGCTGAGGAGTTTGAGGAGGAGTATCTGGAAGACGATACCCTCGAAGAGGATCATCTGGATGATAGCGACGACTCCTTTTCGCCGCCTCCGCCTTCTAAGCAGCGCAAGATAAGCACATCCAAGGGAGTCCAGCAGTCCTCGCGCCAAACACGCAGCCGGGATACTCCAAAGGTCTCGCCAAAGGCAGTTTCAGTGAAGAAGGAAACCAAGTCGCCTCCGAAGCCGGAGCGCTCACTTGTCAAGAAACGCAGAGCTGCTAAATAA
Protein Sequence: MAEKLEAREALMTEKKVCRFCLTEQKLASIFEENSRVKTTANLPLQIMAITAIEVYAGDGMPGHICLECRLLFEHCYRFKQMCKRAETLLRQYPLTGNWPAPLEKPRAPIMTVAPKKVVVIPAAAPSEASAAEAPKKLLNTMAKSNPVVIENVQVLETTLLPHRKVAVSSPVTTSRRSHAYELKVENNQELSMDDVQNMLEDMANELDKEFESESTPKTSPVKPKVLNKSSIRILNKGPSAPVEPRLATPQVKRDDSGNVAIVTEVLDAELPLDDQDDPTKNAETVATDVFPCPDCERSFPLQQLLDIHRLNHTRSRSFQCPHCEKSFFSKYDLAKHNFIHTGERPFKCAVCNKGFTRKALLHRHERTHTDVPKFICVYCEKPFLSRQEMEKHAERHQKKRPFQCGVCTKSFAFKQGLERHEVVHSTNLPFPCQHCERSFSTASKLARHLVAHAGKRAYPCKYCPKSYMLSHHLSRHLRMHTQTSDASFVCSDCKISYSTYNSLLEHSRIHATATLKCPMCREQIEDVDSVDAHMEQHKESERHACEFCDHIFLTQSCLQRHIEDDHVMDMEPYHNDDFEEELESKEDDIIEEEEEELDEVKAEEFEEEYLEDDTLEEDHLDDSDDSFSPPPPSKQRKISTSKGVQQSSRQTRSRDTPKVSPKAVSVKKETKSPPKPERSLVKKRRAAK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00605752;
90% Identity: iTF_00602796;
80% Identity: -