Basic Information

Insect: Drosophila suzukii
Gene Symbol: -
Assembly: GCA_013340165.1
Location: WWNF01000003.1:7494697-7498494[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.053 3.6 8.1 4.5 2 23 335 357 334 357 0.96

2 18 0.4 27 5.3 0.1 1 23 364 389 364 389 0.90

3 18 0.032 2.2 8.8 2.2 2 23 400 421 400 421 0.93

4 18 0.1 6.9 7.2 0.1 3 23 462 483 461 483 0.95

5 18 0.0041 0.28 11.6 0.3 3 23 491 511 489 511 0.95

6 18 0.12 8.4 6.9 0.1 1 23 519 542 519 542 0.96

7 18 0.0005 0.034 14.5 0.3 2 23 547 568 546 568 0.97

8 18 1.5 99 3.6 0.1 1 20 576 595 576 597 0.92

9 18 0.00046 0.031 14.6 0.5 1 22 616 637 616 640 0.90

10 18 0.33 23 5.6 1.4 3 21 647 665 647 666 0.90

11 18 0.0088 0.59 10.6 0.5 1 23 685 710 685 710 0.96

12 18 0.22 15 6.2 1.3 2 23 728 750 727 750 0.93

13 18 0.0017 0.12 12.8 0.2 2 23 756 778 755 778 0.92

14 18 0.0094 0.64 10.5 0.1 2 23 782 804 781 804 0.95

15 18 3.7e-05 0.0025 18.0 2.2 1 23 810 832 810 832 0.98

16 18 0.0028 0.19 12.1 0.9 1 23 836 859 836 859 0.94

17 18 1.1e-05 0.00073 19.7 2.2 1 23 865 888 865 888 0.97

18 18 3.7e-05 0.0025 18.0 0.2 5 23 901 920 894 920 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.053	3.6	8.1	4.5	2	23	335	357	334	357	0.96
2	18	0.4	27	5.3	0.1	1	23	364	389	364	389	0.90
3	18	0.032	2.2	8.8	2.2	2	23	400	421	400	421	0.93
4	18	0.1	6.9	7.2	0.1	3	23	462	483	461	483	0.95
5	18	0.0041	0.28	11.6	0.3	3	23	491	511	489	511	0.95
6	18	0.12	8.4	6.9	0.1	1	23	519	542	519	542	0.96
7	18	0.0005	0.034	14.5	0.3	2	23	547	568	546	568	0.97
8	18	1.5	99	3.6	0.1	1	20	576	595	576	597	0.92
9	18	0.00046	0.031	14.6	0.5	1	22	616	637	616	640	0.90
10	18	0.33	23	5.6	1.4	3	21	647	665	647	666	0.90
11	18	0.0088	0.59	10.6	0.5	1	23	685	710	685	710	0.96
12	18	0.22	15	6.2	1.3	2	23	728	750	727	750	0.93
13	18	0.0017	0.12	12.8	0.2	2	23	756	778	755	778	0.92
14	18	0.0094	0.64	10.5	0.1	2	23	782	804	781	804	0.95
15	18	3.7e-05	0.0025	18.0	2.2	1	23	810	832	810	832	0.98
16	18	0.0028	0.19	12.1	0.9	1	23	836	859	836	859	0.94
17	18	1.1e-05	0.00073	19.7	2.2	1	23	865	888	865	888	0.97
18	18	3.7e-05	0.0025	18.0	0.2	5	23	901	920	894	920	0.94

Sequence Information

Coding Sequence: ATGTCGGAAAACGCGAAAAACAATAGCTGCCTGCATTGCAGCGTATTCAGTACGAAATACCAGTACCAGGAGATATTCGATGAGTTCGGAATCGAGCTGGGACTTCAATCCCTGCTGGCCAAGCACTTCCAGTTCGATGTGTTCCCCGATCCGCAGAAACAGCAGCTTCTGTGCGAGGTGTGCGTCAACAATCTCATCCGCCTGTTTGATATTGATGAACTGGAGAGGGAAAGGGATGCGGCCAAGGAGGTGGGTCAGGACCAGGTCCATGTTCAAGTTCAGGATGAGGCCCCCACGCAGGAGGAACCAATTGTCATCACCGAGGTCCAGTCATCTCCGCCAGCTGCAAGACCCGCCAAGAAAGAAGCGCCTCCAAAGCCTCTGGCCAAGGTCCTGCGTCCTGTGCCCATTATTCCCCCTAGGGCACCAAGTGCCCGGCTAAGGAAATCAGTAGTTCCTGCTCCCCAGATAACATCTAAACCAGCTAGATCTCCTGCGATAGCCAAGGAGCCTTCGCCGGAACTTCCTCCTCCTAAAAGTGAAGCCAAGCTGGCAGATCAGGAGCAAATAAGTGTCCTGATGCAAAACATCCTGGACGAAGACGAAGCTATTGCTAACGACGAGTCCATTGTTGAAGAGGTGACCTGTGAAGATCCCCAGTTCCCCGAGCAAACGGAAACCGCTGAACAAATGGTTCTTCTGAACAGTGAATCTGTTGCAGATCCTAATCTGGATGAGGATGTATACATATACGAGCAAGAGgACATTTTAGATCCAAACTTGGAGGACGTGAAGGTCAAACCAATTGTTCGTCCATCAAGATTGATAGCTGAAGCAGAGGAAAGTCAAAGTGAAGGAGAACTCGATGAGGGGGAGCCCAGCAACATAGTactgtttaattttgttgatatCAAAGATAAGGATGACATTCATGATATTCCGGAATATCTGTCCACCGTGGTGAAGACCAGCTTTGAGAAGCTTACATTTGAGTGGTGTACTGTGTGCAAGCACTGCTCCCTGAAGTGTCCCACATTTGAAAACCTTTTCAGTCACATTTTGAAGACCCACAAAACCCGTAGAGATATCTTTCAGTGTCCGATTGAAGGCTGCAACAAGGAGCTAAAAGGACGGCAGTTCCTAGCCATGCATTTGGTTCTTTTGCACGCACCTGTGGCTGAaaTTCCAATTTATGGAAGCTGTCCGGAATGTAAAATGacattttcaaacattttgcaGTACAACAAACATTCTTGTGCTCATGTTATCAAAAAGAAGAGAGGTATTCGCTCGTTTTGTGAAATGTGCTCCCTGGAGTTTCCATCCTGGAAGCGTTTCAATTTCCACAACCAATTCCATTTGGAGAAGCATAGACCTCGTGCTTGCTTCGTTTGCGATTTTGCCAGCACCAACATCGATGAGCTTTTCCAGCACTTGAACTACGCCCATGAGCCAGTGGGCACCTTGTTTTGTGACCTTTGCGACCGCACTTTCCGGGATCCCGCAGTTTTCATGGAGCACAACAAGTCGCATGCCAATGTGAGCAGCACAACATACTCTTGCGGGGAATGTATGGCGAACTTTGAGTCCCGAGGTCGTTTAAATGGACACATGagAGCAATGCATGGCAGCGTTATAAGCTGCGAACTCTGCTCCCGCGAATTTGCCACCGAAGCCACCTACAACATACACATGAAGAAGCATCTGATCATCGAACGTGATGTTCATGTGTGCGGAAATTGTGGTTTTTTAAGCGACAGCCGCGATACCCTACTTGCCCATGTGGATTCCGAAAAGTCTCCCTGTTTTGGTACCAAGAGATATGTGGAAATTCTTCGGGATGCTTACATCTGCGAGTACTGCTCCTCGTACTTTAAAACCAAGGAAAATCTTCAAGCCCATCGGGACTCGGGAGTTCATAAGGACGGATTGTACTGGTGCCAGCCCTGCGGCAAGGACTTTCCGCACATGAAACTGTACCGCCATCACCTGCGCAACTATCAACAGCTCCGCTCGGACTCGACGCATCGCAAGCTTGAGATTTGTGTGTACTACATGTGCGATCAGGAGAACTGCTCAGAGGCTTATGTAAACTGGAACTCCTTGTACACACACAAGCGACGCACCCACGAATCTTCGAAAAAGCAGGCGGAGAAGAATTCTAAGACTGCCCCAGAATGGATTTGCCAGTTTTGTCTCAAGGAATGCCGCTCGAAGATGTCCTTGTCCGTGCATGTGGCAAGGAGCCACAATAATGACAACGTGGTTTGTCCTTTGTGCAAGGCTTCATACAAAAGCCAGGAGGCTCTGGCCAAACATCATGCCTATTGGCATGAACCCATTGAGTGCCCGGAATGCTTTAAAATCGTCAAAAATCGAAGGAATTATGACACTCATGTTAATGTAGTGCATTCGAATAAGAAGCGCTATTCCTGCAGTGTCTGTCAGAAGGGTTTTTATCACAAGAGTGAAATGGAGGCTCATCAGAAGCTTCATGGACAGTCTTACAGCTGCGATCAGTGCAGTTTCACCACTAGGAACAAGAAGTCGCTTTCTGTTCACATCCTTGGTCAGCACTACAAGCGTTTTGCCTTTGAATGCAAGGAATGCAAGAAGAGGTTTGGCCGTCGGCAGGGCTTGAATACTCACATGCAGCGATCTCATGGCTCCAAGTTACTGTGCCGTGATTACTTCGAGGATGGATGTGGACGCACCTTTGTGAACAGTTCTCAGTTGAACGTTCATGTTCGAAAGGTGCACAAGGGAATCATTTTACTCCAAGAGGATGTGGTCGAAGAGGATGAATACGACGATATGCCATCGACATCCAAAAAGCGTTGCATTCGAATTAACGATGACAATGTTGAATTTATAGAAGAGGTCGGAGATGAACAGGATGGCATAGAGATGGAGGAGGGTGACGAGGAGGAAGACGAGTTCATCGACGAGATACCAGAAGAAGACACCAAGAATTGA
Protein Sequence: MSENAKNNSCLHCSVFSTKYQYQEIFDEFGIELGLQSLLAKHFQFDVFPDPQKQQLLCEVCVNNLIRLFDIDELERERDAAKEVGQDQVHVQVQDEAPTQEEPIVITEVQSSPPAARPAKKEAPPKPLAKVLRPVPIIPPRAPSARLRKSVVPAPQITSKPARSPAIAKEPSPELPPPKSEAKLADQEQISVLMQNILDEDEAIANDESIVEEVTCEDPQFPEQTETAEQMVLLNSESVADPNLDEDVYIYEQEDILDPNLEDVKVKPIVRPSRLIAEAEESQSEGELDEGEPSNIVLFNFVDIKDKDDIHDIPEYLSTVVKTSFEKLTFEWCTVCKHCSLKCPTFENLFSHILKTHKTRRDIFQCPIEGCNKELKGRQFLAMHLVLLHAPVAEIPIYGSCPECKMTFSNILQYNKHSCAHVIKKKRGIRSFCEMCSLEFPSWKRFNFHNQFHLEKHRPRACFVCDFASTNIDELFQHLNYAHEPVGTLFCDLCDRTFRDPAVFMEHNKSHANVSSTTYSCGECMANFESRGRLNGHMRAMHGSVISCELCSREFATEATYNIHMKKHLIIERDVHVCGNCGFLSDSRDTLLAHVDSEKSPCFGTKRYVEILRDAYICEYCSSYFKTKENLQAHRDSGVHKDGLYWCQPCGKDFPHMKLYRHHLRNYQQLRSDSTHRKLEICVYYMCDQENCSEAYVNWNSLYTHKRRTHESSKKQAEKNSKTAPEWICQFCLKECRSKMSLSVHVARSHNNDNVVCPLCKASYKSQEALAKHHAYWHEPIECPECFKIVKNRRNYDTHVNVVHSNKKRYSCSVCQKGFYHKSEMEAHQKLHGQSYSCDQCSFTTRNKKSLSVHILGQHYKRFAFECKECKKRFGRRQGLNTHMQRSHGSKLLCRDYFEDGCGRTFVNSSQLNVHVRKVHKGIILLQEDVVEEDEYDDMPSTSKKRCIRINDDNVEFIEEVGDEQDGIEMEEGDEEEDEFIDEIPEEDTKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00605739;
90% Identity: iTF_00486740;
80% Identity: -