Basic Information

Insect: Drosophila suzukii
Gene Symbol: Paris
Assembly: GCA_013340165.1
Location: WWNF01000001.1:18230662-18231714[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.8e-06 0.00012 22.2 1.5 1 23 128 150 128 150 0.98

2 8 0.00012 0.0081 16.4 1.1 1 23 156 178 156 178 0.95

3 8 2e-07 1.3e-05 25.2 3.7 1 23 184 206 184 206 0.99

4 8 1.6e-07 1.1e-05 25.5 2.1 1 23 212 234 212 234 0.99

5 8 1.1e-08 7.2e-07 29.2 4.3 1 23 240 262 240 262 0.98

6 8 0.012 0.84 10.1 4.2 1 23 268 290 268 290 0.98

7 8 9.5e-05 0.0065 16.7 4.1 1 23 296 318 296 318 0.97

8 8 3.2e-05 0.0022 18.2 1.7 2 23 325 347 324 347 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.8e-06	0.00012	22.2	1.5	1	23	128	150	128	150	0.98
2	8	0.00012	0.0081	16.4	1.1	1	23	156	178	156	178	0.95
3	8	2e-07	1.3e-05	25.2	3.7	1	23	184	206	184	206	0.99
4	8	1.6e-07	1.1e-05	25.5	2.1	1	23	212	234	212	234	0.99
5	8	1.1e-08	7.2e-07	29.2	4.3	1	23	240	262	240	262	0.98
6	8	0.012	0.84	10.1	4.2	1	23	268	290	268	290	0.98
7	8	9.5e-05	0.0065	16.7	4.1	1	23	296	318	296	318	0.97
8	8	3.2e-05	0.0022	18.2	1.7	2	23	325	347	324	347	0.93

Sequence Information

Coding Sequence: ATGGAGCAAATCTGTCGTGTTTGTCTGGGAAGATCGGATTATTTGGTGAACATCTTCGATGCCAGGCGAAAGACCCGAGTTTCCATTGCTGAGATGATTGCCCAGTGTACTGGTTTTGAAGTCAAACGTGGCGACTTGTTACCGGAAATGATATGTCCACCGTGTTTGGAGGATGCCAAGAATGCATTTTCCATAAGGCAAACCTGCGAGAGGAGTCACCAGTTCTACTGCAAAGTTCGGGATGATGGAATCGAGGAGGCATTGTGCACCTTGCTCGATGAAGAGGACTGGGATTCTTCGGAATATGAAGAGAAGTGGAAACATTCTCCATCCGATGATGATCTCCATGACGATGACGAAATCGACAGGAAGGCGGTCTCATTTGAATGTCGGGAATGCCAGAAGATCTTTCAACGAAAGGGTTCCTGGCTGAGGCACATGAGAACGCACGTGGATGGACAATCCTTTCCTTGTATCTACTGCTCGCAGAACTTTAGATTTCGGGTCACTCTCAATGCCCACATGCGAACCCACAACTTGGCTAAGCCTTATGAGTGTTCCCACTGCTCAAAGTCCTTTGCCCAGAAGTCCACACTGCAGTCGCACGAAAGGACTCACACTGGCGAACGGCCGTATAAGTGTGCACAGTGCTCCAAGACCTTTATTAAATCAACAGATCTTCGCCGGCACATCCGCACCCACGGAGGGGAAAGGCCATACAAGTGTCCGGATTGCTCGAAAACCTTCACTAGGAAATCTCATCTCAAAAACCATCTCCTTAGTCACACGGGTGAACGACCGCACCAGTGTCCCCAATGCATATCGTCCTTTGCTTTAAAGCATCATCTCAACGAACACCTCCGCATCCACTCTGGAGTTCGTCCTTTTCAGTGCTCTTTGTGCTCCAAGTCGTTCCGTCTCAGCAGCACCCTTAAGGAACACAAGCACATACACAAAGCGGAAAGAACCTTAATGTGTCCCCACTGTTCTAGTTCCTTTAGGCAGAGAAAAACACTTACAAGACATATTCTCGAAATTCACGAACGAGCATGA
Protein Sequence: MEQICRVCLGRSDYLVNIFDARRKTRVSIAEMIAQCTGFEVKRGDLLPEMICPPCLEDAKNAFSIRQTCERSHQFYCKVRDDGIEEALCTLLDEEDWDSSEYEEKWKHSPSDDDLHDDDEIDRKAVSFECRECQKIFQRKGSWLRHMRTHVDGQSFPCIYCSQNFRFRVTLNAHMRTHNLAKPYECSHCSKSFAQKSTLQSHERTHTGERPYKCAQCSKTFIKSTDLRRHIRTHGGERPYKCPDCSKTFTRKSHLKNHLLSHTGERPHQCPQCISSFALKHHLNEHLRIHSGVRPFQCSLCSKSFRLSSTLKEHKHIHKAERTLMCPHCSSSFRQRKTLTRHILEIHERA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00486717;
90% Identity: iTF_00602764;
80% Identity: -