Basic Information

Insect: Drosophila sucinea
Gene Symbol: -
Assembly: GCA_018150745.1
Location: JAECWP010000001.1:15171079-15187386[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.26 19 6.0 2.0 1 23 620 642 620 642 0.96

2 7 1.4e-05 0.001 19.4 1.1 1 23 648 670 648 670 0.98

3 7 1.2e-05 0.00089 19.6 0.2 1 23 676 698 676 698 0.98

4 7 2.8e-06 0.00021 21.6 1.4 1 23 704 726 704 726 0.98

5 7 0.00032 0.024 15.1 2.1 1 23 732 754 732 754 0.98

6 7 4.2e-06 0.00031 21.0 2.4 3 23 762 782 760 782 0.94

7 7 1.2e-06 8.7e-05 22.8 1.1 1 23 788 811 788 811 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.26	19	6.0	2.0	1	23	620	642	620	642	0.96
2	7	1.4e-05	0.001	19.4	1.1	1	23	648	670	648	670	0.98
3	7	1.2e-05	0.00089	19.6	0.2	1	23	676	698	676	698	0.98
4	7	2.8e-06	0.00021	21.6	1.4	1	23	704	726	704	726	0.98
5	7	0.00032	0.024	15.1	2.1	1	23	732	754	732	754	0.98
6	7	4.2e-06	0.00031	21.0	2.4	3	23	762	782	760	782	0.94
7	7	1.2e-06	8.7e-05	22.8	1.1	1	23	788	811	788	811	0.98

Sequence Information

Coding Sequence: ATGTTGCCACTTCAGCAGCAACAGCAACAACAGCCAGAGCAAGTGCATCCTCCCACATTCAATTGGCAATTGGAGGACTATGCGTATTTTCGTAAATGTGGAGAAATCACAACATCACCGGATGTTCAATGCTTTGGATTCAATTGTGCCTTCTGTCCGGCCATTTGCCTGCAATTCACTGTCTTTATGGATCACATACGTGAACACCTGCAGGAGGTGCAACAACGTTATGAGGAGGGAGCCGATGAGAAAATCGAACAAACAACTCAAACGGATTTAATGATAATGGAAATGGACGGCAGCGGCGTCATCGGAAGCCCATACACTTGCCCCGATATCTATTCAGACCTAGACCATCAGGCCACAACAAATAAATTTACCAACGCCAAGGTGCTCGACACGCAATCTTTGGGTGTGGGTCTTCAGTTGGTGAACATATCCCAAACGACCCCAACTCCTTCATCTACCCACCTAGTGCAGCAACAGCACCAGCACCCGCAGGAGCTGTCGACTGCAGGAATAGATTTGGTTTATGTCATGTCAAATCCATTACCATTGCCATTGCCACCCTCGCCGCCCCTTTCCAGCGACGAGCAGCAGAGTCCAAGTCCAAGTTGTTCATTGCCTCTGGCTCCATTTGAAGTATTGCAAGCGGGCATAGGTGGCACGCCCACACTCAGTCATGGTATGGGGGGAACGACGCCAACTCCTTTGCCTTTGCCACGATATGAGACACGACGCGTGCGCTCCCGACGTGATTTGGAAAGAAATCGTGAATTTGTTAGCTGCCTTCTGGTGGCGTATAAACGTTTAGAGAAATTATGGAATCCCAAGCATCCGGACTATAAATACAATGCCAAACGTAGTGTATATAGTGAATTGGCTGCACCATTGGAAAATGCGTTTAATTTACAACTCACTGGAGCTGAGATATTTGCCGTACTCAAAGAACTACGTGGTCGCTATCGTCGCGAACTAAGCAAATTGAATGCCTTGGGTGGAAAATATAAATCCAGATTATGGTATTTCAATCAAATGCATTTTCTAAGAAGTGTCATCGAAGACAAACGTGCCGAAAAGGAAGCCAAGATCTCAAATGAAACTGCCGAAAGTGAGAACGCCTGCGAGACTGATACAGAATCCTCAACAAAATCCTCCACTTATCGTGAGGTATTAAGCTATATACTCGATGCTTTCAAGCGTCAGGAGTGTTTGTGGAATCCTCAGCATTATGATTATGCCAGCTGCTGCAAACAGGAATTATATCGTGAGATTTCCACACAATTGCACGAAGATCTCAACTATGAGATGAGCGGGGAGGAGTGCTATAAGGAAATTCAAAAGCTAAGGACACGCTATCGCAAAGAATTGCGCATGGTGATCAAGCATAAGGGTTTATATTTACCAAAACTTTGGTGTTACGATGAAATGGATTTCCTACAGCATATACTACAAGAGCAAATCTTCAATAAGATCAGCAAAAAAGTGGGCGTGGTTGAAACAAATCAGAAAACCAAATTCATCAATGCCAATTCCATAGAGTTTGCCACAGCGGAAGATCAATTGCAATTTGTGGATATCTATAGAAATTATCCAGCCCTCTGGGATGTAGATCATCCAGATTTTCGTTCGAATGCCTATCGCAGTCAGGCTTTGGGTCAAATGCTGGATGAGTTGAATACTACTTTTAATGGAGATGCATACACTGCCGAGCAACTGGAGAAGACGCTGTTCGAGTTACGTAAACAGTTTTCCGCACAGAAGAGAAAAATCTTGACAAATCCACCGAACGCTTGTAGCAGCATTTCCCTGATGCATGCCAAATTGTCACAGTTTTTGGAACAGAATCTGGGACCATTTCGTTGTGATGTTTGCTCGGAGCTAATTAAAACCTGCGATCAATTCAAGGTCCATCGTTCGGGTCATGATGGTACACAGCCTTTTATTTGTACGCTCTGCGGCAAAGGATTCCAAATGCCTTGCAATCTGACTGTACACATAAGACGACATCGTCGTGATTTTCCCTATGCCTGCGAGAGATGCGATAAAAGATTTGCCACATCCACTGAGGTGGCCATCCATATGCGTAGTCATACTGGCGAACGTCCATATATTTGCGATTTGTGTGGCAAGTCGTTTAAAACATGGTCGTTCTTCGATATACATCGACGGAGACATCTCAATCAGTCGACGTTCCATTGTCCCATCTGTCCGAAAGGTTTCTATGAGAAGAATCGTTTCACCGATCACATGAATTCCCATTGGGCCATACGTAAACATTTGTGCACTGTTTGTGGCAAAACATTTACCACATATGGCAATCTCAAAAAGCATACCGAACTCCATTTGGCTGTTAAGAAATACAAGTGCACTGACTGTGGCAAACGATTCGCCCAGTTTGCCAGTTTACGTTGGCACAAGAAACGTGCCCATGCCGAGCAGCAGCAGCAGGAGGAAGAGGAGGAGGTGGAGGTGGAGCCGGAGAAGAGCACTTGA
Protein Sequence: MLPLQQQQQQQPEQVHPPTFNWQLEDYAYFRKCGEITTSPDVQCFGFNCAFCPAICLQFTVFMDHIREHLQEVQQRYEEGADEKIEQTTQTDLMIMEMDGSGVIGSPYTCPDIYSDLDHQATTNKFTNAKVLDTQSLGVGLQLVNISQTTPTPSSTHLVQQQHQHPQELSTAGIDLVYVMSNPLPLPLPPSPPLSSDEQQSPSPSCSLPLAPFEVLQAGIGGTPTLSHGMGGTTPTPLPLPRYETRRVRSRRDLERNREFVSCLLVAYKRLEKLWNPKHPDYKYNAKRSVYSELAAPLENAFNLQLTGAEIFAVLKELRGRYRRELSKLNALGGKYKSRLWYFNQMHFLRSVIEDKRAEKEAKISNETAESENACETDTESSTKSSTYREVLSYILDAFKRQECLWNPQHYDYASCCKQELYREISTQLHEDLNYEMSGEECYKEIQKLRTRYRKELRMVIKHKGLYLPKLWCYDEMDFLQHILQEQIFNKISKKVGVVETNQKTKFINANSIEFATAEDQLQFVDIYRNYPALWDVDHPDFRSNAYRSQALGQMLDELNTTFNGDAYTAEQLEKTLFELRKQFSAQKRKILTNPPNACSSISLMHAKLSQFLEQNLGPFRCDVCSELIKTCDQFKVHRSGHDGTQPFICTLCGKGFQMPCNLTVHIRRHRRDFPYACERCDKRFATSTEVAIHMRSHTGERPYICDLCGKSFKTWSFFDIHRRRHLNQSTFHCPICPKGFYEKNRFTDHMNSHWAIRKHLCTVCGKTFTTYGNLKKHTELHLAVKKYKCTDCGKRFAQFASLRWHKKRAHAEQQQQEEEEEVEVEPEKST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00600522;
90% Identity: iTF_00600522;
80% Identity: -