Dsuc013583.1
Basic Information
- Insect
- Drosophila sucinea
- Gene Symbol
- -
- Assembly
- GCA_018150745.1
- Location
- JAECWP010000001.1:23600897-23608600[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00022 0.016 15.6 3.4 1 23 289 311 289 311 0.98 2 11 0.0011 0.079 13.5 10.5 1 23 318 340 318 340 0.96 3 11 0.00011 0.0079 16.6 6.5 1 23 346 368 346 368 0.98 4 11 0.00033 0.024 15.1 2.3 1 23 374 396 374 396 0.95 5 11 2.3e-05 0.0017 18.7 0.5 1 23 402 424 402 424 0.97 6 11 7.7e-06 0.00057 20.2 0.1 1 23 430 452 430 452 0.98 7 11 7.4e-05 0.0055 17.1 2.0 1 23 457 480 457 480 0.97 8 11 0.00084 0.062 13.8 0.2 1 23 486 509 486 509 0.94 9 11 0.00018 0.013 15.9 0.1 1 23 567 589 567 589 0.98 10 11 0.016 1.2 9.8 2.7 1 23 670 692 670 692 0.95 11 11 0.0047 0.35 11.4 4.9 5 23 705 723 697 723 0.92
Sequence Information
- Coding Sequence
- ATGTGCGCTGCACAGAGCAATCCGCCGCCCTTCGGCTACGCTTGGGGCTTTGCAGACAACGGCAGCCGTACCGCCGAATCGGTATTGGAAATATCGCCAAATATTAATTACACCGTTAGTGGGGAATCGATGCCCTATTTGCTATCCACGGATGGATCATTGGCCGTACAAAAGGATGTTAAAGGTGCACTGGCTGGCAATAAGGCAAATGTGGTGCGTCGCATGTTCGTGGTGAACGATTCCTCATTTCCGCACGGTACACAAAGAGTAATTACCACAGGCGCCACCTCGACGGTGGTGAAGAAACAGGACTCAACTACTCAACAGGTGTTGAGTATAAATTCACTCGATAAGAACTATCTTCTGGTCGATCAGGCCACAGCCGCAGCTGCAGCAGCCGCCGCTGCTGGTGATCCGGCGGCTCATCATCATACGTTGACGAATGGTAGCATTGTTGATTCCAAGACAGGACAAACCGTTTTGACCTCGGGCGCAGCTGCTGCTGCCGCTGCTAAATCCCATTTCGGTTCAATAGGTGCACTGCATCTAACGCAAGAGGAGTGCAACGAGATATTGATAAAGCGTGCCATCGCTGCCGGCCACCATCAGACGCACACAATCACCACCGCCGACGGAGCGCATCATCATAGCACGGCGCCAGGCGCGACACCAAGTGACCTACTTCCTGGTATTTCAGTTCAAGTACAGAAAGTAATACAAGGACTCGAAGATAACGAGGACTCACAGGGCGACGCACCCAACTTAAAGTTGGAGCCAGGCACATTAGAGTTGTCCCCAAAGACCGAACTACAGGAATCAATGCATTTCAGCGAAACGGACGCCACTATTAAGAAGGAACGCCCGTACAGTTGTGACGAGTGCGGCAAGTCCTTTCTGCTCAAGCATCATTTGACCACACACGCCCGCGTCCACACAGGTGGTGAACGTCCACATATCTGCACCCATTGCGGCAAGAGCTTTGCCCACAAACATTGCCTGAATACCCATTTGCTGTTGCATTCAACAGACCGCCCATATCAGTGCCAGGAGTGCAAGAAAAGTTTTACCCTTAAGCATCATCTGTTGACGCATTCGCGTGTCCATAGCCGGGATCGGCCATTTGTGTGCCAGGAGTGTGGACGCTCATTTCCACTGAAGCGTCACCTGGTCACTCATAGTAAATTTCACGCAGGCGAACGTCCATACGTCTGCGAGGAATGCGGTGAGAGTTTTGCCCAGGAGAATCATTTGATTATGCACTCGCGCTTTCACGGGTCATTGAATCCATTTGTCTGTTCTGAGTGCGGTGCTTCATTTCCCCGCAAATTCCAATTGGTAAATCACGGACGTATACACGGCAAAATTCCACATTCGTGTACCATTTGTGGTAAAGAATTTCTACAGAAGCGCACACTAGTTTCCCACATGAGGCGCGTACATACGGGCGAGCAGGCCCATCCCTGCGTGAGTTGTGGCGAGGGTTTCCCCACAAAGGCCGAACTTCATCAGCATGTTCGTGCCGCTCACAATGGCGTTAATCCCAATACAAGTAGCGCCACTATAATAGCAAATCAGCAGCAGCTACAACAGCCTCACCATCACCCCGGACATCCGCAGACCATTGTGGTTAGCAATGCGGCCAATTCTACACTACTTACGGTCTCCACAACCGACGCAAATGGTGTGGCACGACCACAGTTTGTTTGCCGTGAGTGCGGAAGCGCCTTTAATAGCCGCGAAGCTTTGGCGCTGCACTTGCGTCTGCACACTGGCGACAAGAGTCTAATGACCGATTTGTGCGCCCTAACGGCAGCTCTACCAGGACATTTTTTGAGCACAGCCAGTCTAAATCCAGGCACTGTTGTAACAGCCAATCCCAATTTGGTTGGTCAGAGTCCAGTGCCAGTGCAAATTATTTCGTCCACCGGCCAGGTAATGCAACAAACCACGCTGGTGCAGGCCGCCAATTCGACCCATCCGCAGGCTGTTGTCACCGCTCCGAAATCGCATTTCTGTGCCAGCTGCGGCAAGGGATTCGCTGCAAAACATGGGCTGATGCAGCATAATCGGCGACATCCCAACGGCGGTTGCACGGTCCGCACCCATGTCTGTGAGTGTGGCAAGGCATTCTTCCAGAAGAATCATCTGATGTTGCATCAGCGCCAGCATTTGGAAACAAAGCCAGCCATATCACAGCAACAGGAGGCCAATGCCCAGCAGCAACAGCAAGTGGTAGTGGCCACATCCACGGCATCTGGACAGCAACAGCCGACACAGGTTCAGGTGCAGATATTACCCGATGGTCATATGGCACATGGCAAGGTTATTAAGTACGAGATATGCCGAAATGTATTGCAGGAGGATCAGGCAGCACAACAACAGCAGCAGCAACAACAACAATCGGGCATGAACACTGACTAA
- Protein Sequence
- MCAAQSNPPPFGYAWGFADNGSRTAESVLEISPNINYTVSGESMPYLLSTDGSLAVQKDVKGALAGNKANVVRRMFVVNDSSFPHGTQRVITTGATSTVVKKQDSTTQQVLSINSLDKNYLLVDQATAAAAAAAAAGDPAAHHHTLTNGSIVDSKTGQTVLTSGAAAAAAAKSHFGSIGALHLTQEECNEILIKRAIAAGHHQTHTITTADGAHHHSTAPGATPSDLLPGISVQVQKVIQGLEDNEDSQGDAPNLKLEPGTLELSPKTELQESMHFSETDATIKKERPYSCDECGKSFLLKHHLTTHARVHTGGERPHICTHCGKSFAHKHCLNTHLLLHSTDRPYQCQECKKSFTLKHHLLTHSRVHSRDRPFVCQECGRSFPLKRHLVTHSKFHAGERPYVCEECGESFAQENHLIMHSRFHGSLNPFVCSECGASFPRKFQLVNHGRIHGKIPHSCTICGKEFLQKRTLVSHMRRVHTGEQAHPCVSCGEGFPTKAELHQHVRAAHNGVNPNTSSATIIANQQQLQQPHHHPGHPQTIVVSNAANSTLLTVSTTDANGVARPQFVCRECGSAFNSREALALHLRLHTGDKSLMTDLCALTAALPGHFLSTASLNPGTVVTANPNLVGQSPVPVQIISSTGQVMQQTTLVQAANSTHPQAVVTAPKSHFCASCGKGFAAKHGLMQHNRRHPNGGCTVRTHVCECGKAFFQKNHLMLHQRQHLETKPAISQQQEANAQQQQQVVVATSTASGQQQPTQVQVQILPDGHMAHGKVIKYEICRNVLQEDQAAQQQQQQQQQSGMNTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01556276;
- 90% Identity
- iTF_00523858;
- 80% Identity
- -