Dsub011398.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila subsilvestris
Gene Symbol
su(Hw)
Assembly
GCA_035043285.1
Location
JAWNNB010001746.1:5166081-5169102[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00065 0.047 14.3 2.2 1 20 220 239 220 241 0.94
2 12 2.7e-06 0.0002 21.8 0.4 3 23 292 313 290 313 0.93
3 12 0.04 2.9 8.7 0.0 1 23 319 341 319 341 0.95
4 12 5.3e-07 3.8e-05 24.0 2.4 1 21 348 368 348 369 0.95
5 12 6e-06 0.00043 20.7 1.0 2 23 381 402 380 402 0.96
6 12 0.00028 0.02 15.5 6.3 1 23 413 435 413 435 0.99
7 12 7.9e-05 0.0057 17.2 0.9 1 23 441 463 441 463 0.97
8 12 9.2e-06 0.00066 20.1 0.7 1 23 469 491 469 491 0.98
9 12 1.5e-06 0.0001 22.6 3.0 1 23 497 519 497 519 0.98
10 12 7.1e-05 0.0051 17.3 0.4 1 23 523 545 523 545 0.97
11 12 6.1e-05 0.0044 17.5 0.2 1 21 553 573 553 577 0.92
12 12 0.00093 0.067 13.8 1.4 3 21 597 615 595 618 0.94

Sequence Information

Coding Sequence
ATGAGCGCCGCCGCAAAGGAGGGAAGAAAGACAGATGGCTCCTCCGAAAGGGCCAGCAGGGCCAGCACAACTGTAGTGAAAATAATTGGCGTGGACAAACTGTGCTTGCCAAGGGTCAAAGGCCCGACGACGCGCATGAAGCTGCTCAACGACGTCGCCGCCTCTGCCAAGCCGGATAAGCGTGTGAGCCTTGGTGGCGCTCGCATCAAAATACTCAACGATGAGGCCATGATCTCGCCAAAAGCCGAGAAACGCAGCCCACAAAAGACAGCCAGTCCCTCGGGCTCTGTCAAGATATTAAACGAGAAGCGCCTGGCTCCATCCGCGGCGACGACTGTGGAGACGACAAAGATCAAGACTTCCCCCACCAAACCGAAGAAGAAGATGGATCACTACGTGCTGCAGGCCGTCAAGGCCGAGAACAGCAAAGCAGACACCACATCCAGTGTATCCGAGGAGGACGAGAGCATTGCCTTCATCCTAGCCGACGACGATGAGATGGAACCTGTGGCTAGTCGAGCCAATGGCGAGGAGATTGTGGTTTCAGGTGCAGAAGAGGACAatgaggatgatgaggatggcgatgacgatgacgatgacgatggcgcTGTTAAAAGCACCGTTGGCAGCCAGGTGGCGATCAAGGAAATGGTTGAACACGTTTGCGGCAAGTGCTACAAGACATTCCGCCGTGTGAAGAGCCTGAAGAAGCACTTGGAATTCTGTCGCTACGACAGTGGCTATCATCTGCGCAAGGCGGAAATGCTCAAGAACTTGGAGAAGATTGAAAAGGATGCAGTGGTGATGGAGAAAAAGGACatttgcttctgctgcagcgaGAGCTACGACACCTTTCATTTGGGCCACATCAATTGCCCCGATTGTCCAAAGTCATTCAAGACGCAGACCAGCTACGAGCGTCACATCTTCATCACGCACTCGGAGTTCAATACCTATCCCTGTTCGATTTGCAATGCCAATTTGCGCAGCGCCGCATTGCTGACGCTTCACGAGGAGCAGCACAAGTCGCGTGGCAAGCCATATGCCTGTAAAATCTGCGGCAAGGACTTTACACGCTCCTATCACCTGAAGCGCCACCAGAAGTACTCGTCCTGCTCGGCCAATGAGAACGATACCATGAGCTGTAAGGTGTGCGATCGTGTCTTCTATCGCCTGGACAATCTGCGCTCGCATCTGAAGCAACATTTGGGCACACAAGTGGTGAAGAAACCCGAGTACATGTGCCACACCTGCAAGAATTGCTTCTACAGCCTGTCCACGCTCAACATTCACATACGCACCCACACTGGGGAGAAGCCCTTCGATTGCGATCTGTGTGACAAGAAGTTCTCCGCCTTGGTGGCTCTCAAGAAGCATCGACGCTACCACACTGGCGAGAAGCCCTACAGCTGCACAGTGTGCAATCAATCCTTTGCCGTCAAGGAGGTGCTCAATCGCCACATGAAGCGACACACCGGAGAGCGTCCGCACAAGTGCAACGAGTGTGGCAAGAGCTTCATCCAGGCCACCCAGCTGCGCACCCATTCCAAAACCCATATACGTCCCTACGCCTGCGATTTGTGTGATGAAAAGTACAAGACAGAGAAGCAACTCGAGCGCCACGTTAAGGAGCACACGCGGCAGAAGCGCGCGTCATTCGCTTGCACTGACTGCAAGCGTACCTTCCGCACCACAGCCCTGCTCAAGGAGCACATGGATGCCGGCGATCATTCGCCTAAACCACAACGCGCCAAGCGCTCAGCCACCAAGGTTATCGAACGCACGGACTGTGCCATTTGTGACAAGAATTTCGACAGCACCGAGACCTTGCGCAAGCATATCCGCTGCGTCCACGAATGCGATCCCGATGACATCTTTGGGGTCGAACCGCCAAAGCGCAAGAAGTCCAAAAAGTCTGTCGAAGCAGAGGAGCCTACTGAAATGGTGGATCTTAATCCATCGGCGGGCTCGCTGATTTCCAGCAAAACCGATGGCAATGGTGTTGTGGTCAGGGAGTTTCTGGTGGACGATGACAGTGCCCAGACCATCTTGTTGGAGAACGAGACGTACACCATTCTGCCCCTGGATGATGGGGGCACTAGCAGTGACCAACAGGTGCTCGAAGCAGGGGACAATGTCAAGCCGGAGGCCAACAAAAGTGAGTCGAAGAAAGCGGTGGTTTCCCCGGTGGTCAAGAAGGAGCAGCGAAAATCGCTGGCGGCCAGCTTGGCGGCAGCTATTGCCGACAACATGGAGGAGCCGACAAGTGAGGATGATTTCAGCGGCGATGTACTCACCGAATGCGACCTGAAGCTCAAGGAGAATGTCGCCAAACTGATTGACATGCTGGTCGATCCGCACATCCTCAAGAAGTACGGCTGGCCCAACACCTCCGAGGAGACAATGCTCTGCAAGGTGATCGAGAATTGTGGCCACGATCTGAGCAAGGATGAGAGCTACGCAGAGCTCGAATACGGCGATCGTATGCGTGAATATTGCAAGCTTCTCTTCACTGTGGTCATCCACAATGAGTCTATACGGTCCCTGCTCAACAACTtccccatcgatgatgtcatcGAGTATGTACTGGGGGACGAGGACCAGGAGAATGAGcctgaggaggaggaggaggaggatggcaAGCAGAAAGACAACGATGATGCATCCGACAACAAGTCGGATACCGCAGAGACCCCTCCAGATGATAAGGCTTAG
Protein Sequence
MSAAAKEGRKTDGSSERASRASTTVVKIIGVDKLCLPRVKGPTTRMKLLNDVAASAKPDKRVSLGGARIKILNDEAMISPKAEKRSPQKTASPSGSVKILNEKRLAPSAATTVETTKIKTSPTKPKKKMDHYVLQAVKAENSKADTTSSVSEEDESIAFILADDDEMEPVASRANGEEIVVSGAEEDNEDDEDGDDDDDDDGAVKSTVGSQVAIKEMVEHVCGKCYKTFRRVKSLKKHLEFCRYDSGYHLRKAEMLKNLEKIEKDAVVMEKKDICFCCSESYDTFHLGHINCPDCPKSFKTQTSYERHIFITHSEFNTYPCSICNANLRSAALLTLHEEQHKSRGKPYACKICGKDFTRSYHLKRHQKYSSCSANENDTMSCKVCDRVFYRLDNLRSHLKQHLGTQVVKKPEYMCHTCKNCFYSLSTLNIHIRTHTGEKPFDCDLCDKKFSALVALKKHRRYHTGEKPYSCTVCNQSFAVKEVLNRHMKRHTGERPHKCNECGKSFIQATQLRTHSKTHIRPYACDLCDEKYKTEKQLERHVKEHTRQKRASFACTDCKRTFRTTALLKEHMDAGDHSPKPQRAKRSATKVIERTDCAICDKNFDSTETLRKHIRCVHECDPDDIFGVEPPKRKKSKKSVEAEEPTEMVDLNPSAGSLISSKTDGNGVVVREFLVDDDSAQTILLENETYTILPLDDGGTSSDQQVLEAGDNVKPEANKSESKKAVVSPVVKKEQRKSLAASLAAAIADNMEEPTSEDDFSGDVLTECDLKLKENVAKLIDMLVDPHILKKYGWPNTSEETMLCKVIENCGHDLSKDESYAELEYGDRMREYCKLLFTVVIHNESIRSLLNNFPIDDVIEYVLGDEDQENEPEEEEEEDGKQKDNDDASDNKSDTAETPPDDKA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00487439;
90% Identity
iTF_00473938;
80% Identity
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