Dsub006253.1
Basic Information
- Insect
- Drosophila subsilvestris
- Gene Symbol
- bab2
- Assembly
- GCA_035043285.1
- Location
- JAWNNB010001571.1:4942561-4944234[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.9e-17 3e-14 52.5 0.0 1 43 62 105 62 107 0.95
Sequence Information
- Coding Sequence
- ATGATCGAAAGCGGCGGACATGGCGGCTGGatgggcgctgctgctgcggcaacAGGCGCTTCTGTTGCGGCAGACAGCTACCAGTACCAGCTGCAGTCCATGTGGCAGAAATGCTGGAACACCAACCAGCAGAATCTCGTGCAGCAGTTGCGCTTCCGCGAACGCGGCCCCTTGAAATCGTGGCGCCCCGAGGCCATGGCCGAGGCCATCTTCAGTGTCCTCAAGGAgggtctctccctctcgcagGCGGCCCGCAAATTCGACATCCCCTACCCCACGTTCGTGCTGTATGCGAATCGAGTGCACAACATGCTGGGGCCCTCCCTCGATGGCGGCACCGATCCGCGGCCCAAGGCCAGGGGCAGGCCGCAGCGCATCCTGTTGGGCATGTGGCCGGAGGAGCTCATTCGCAGTGTCATCAAGGCGGTGGTCTTCAGGGACTATCGTGAGATCAAGGAGGACATGGGGGCACATCAGTACGCGAATGGACAGTCGCATGCCACCTACATTGGTGGCGGCACCACTACGAATGGCTATCACAGCGCTGCAGCCGCCAAGATGGCCGCACAGAATGCCGCCTTGGCCCCGCCCGATGCCAGCAGTCCGCTGAGCACCATGACAGAGTCCCTGCGCAGGCAGATCctgtcgcagcagcagcaggcggcgcagcatcagcagcaccaacagcaggcGCCGCACATGTACAAGTCGCCGGCCTACTTGCAACGTTCCGAGATCGAGGATCAGGTctcggcggcagcggctgtggcagcagcggcggccaagcatcagcagcagagcggcggaggtggtggcggcggtggtcgAGGCTCTGAGAATCTGCCCGATCTGACGGCCTTGGGGCTGATGGGGCTACCAGGCCTCAATGTCCTTCCATCGCGTGGGGCAGGTGGCAATGGGGGTGGCAGTGGTGCGGCGGCTCCCTCGAGTGCCGCCAGCTATGCGCGAGAGCTGACACGCGAGCGGGAGCGTGATCGGGAGCTCAAGGAGGCGATGCAGGCGCTCGAATCGTCCTGGCGCCGCCTCCCCTACTCCACGCACTAtgcgaagcagcagcagcagcagcaacagcagcagcagcagcagcagcacaccaaGCAGGAGCATCCGAATTATGCGTACAACAAGCGCTTCTTGGAGAGCCTGCCGGCGGGCATTGACTTCGAGGCCATTGCAAACGGCCTGCTACAGAAATCGGTGCAGGCACAGAACAAGAGTCCCCGCTTCGAAGACTTCTTTCCGGGGCCCGGGGGGCCGCAGGATATGAGCGAACTGTTTGTGAATTCCgatgcggcggcagcagcggcagccgctgCGGCCTATGCCCCCGTGCGTGAGTCGCCACTGATGAAGATcaagctggagcagcagcagcatgccaCAGAGCTGCCGCATGAGgactga
- Protein Sequence
- MIESGGHGGWMGAAAAATGASVAADSYQYQLQSMWQKCWNTNQQNLVQQLRFRERGPLKSWRPEAMAEAIFSVLKEGLSLSQAARKFDIPYPTFVLYANRVHNMLGPSLDGGTDPRPKARGRPQRILLGMWPEELIRSVIKAVVFRDYREIKEDMGAHQYANGQSHATYIGGGTTTNGYHSAAAAKMAAQNAALAPPDASSPLSTMTESLRRQILSQQQQAAQHQQHQQQAPHMYKSPAYLQRSEIEDQVSAAAAVAAAAAKHQQQSGGGGGGGGRGSENLPDLTALGLMGLPGLNVLPSRGAGGNGGGSGAAAPSSAASYARELTRERERDRELKEAMQALESSWRRLPYSTHYAKQQQQQQQQQQQQQHTKQEHPNYAYNKRFLESLPAGIDFEAIANGLLQKSVQAQNKSPRFEDFFPGPGGPQDMSELFVNSDAAAAAAAAAAYAPVRESPLMKIKLEQQQHATELPHED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00487222;
- 90% Identity
- iTF_00580638; iTF_00535969; iTF_00517635; iTF_00473705; iTF_00484369; iTF_00471538; iTF_00487222;
- 80% Identity
- -