Dsup006031.1
Basic Information
- Insect
- Drosophila subpulchrella
- Gene Symbol
- -
- Assembly
- GCA_014743375.2
- Location
- NC:627885-630119[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 6.4 3.7e+02 1.6 2.0 2 23 248 270 247 270 0.89 2 10 0.023 1.3 9.3 1.1 6 23 279 296 279 296 0.98 3 10 0.0005 0.029 14.5 5.9 1 23 302 325 302 326 0.93 4 10 0.00042 0.024 14.8 0.6 1 23 333 355 333 355 0.95 5 10 5.6e-05 0.0032 17.6 0.7 2 23 361 383 360 383 0.96 6 10 0.14 7.9 6.9 0.1 2 23 389 410 388 410 0.95 7 10 5 2.9e+02 2.0 7.2 2 23 419 440 418 440 0.92 8 10 0.00047 0.027 14.6 0.2 2 23 446 468 446 468 0.96 9 10 5.6e-06 0.00032 20.7 0.6 1 23 474 496 474 496 0.97 10 10 0.00016 0.0092 16.1 8.9 1 23 502 525 502 525 0.98
Sequence Information
- Coding Sequence
- ATGATTTGCCGTTTGTGCCTCAACAGCGTCAACGATTCGGATACAATACGGATTTTCGAGGACGTTGGCCTTTCCCTTAATGTGGCTAATGTGCTGGCCAAATACTTTTGGTTTGAGCCAAAAAGCGATGATCCCATATCCACGGTTATTTGTTTGGCCTGCTGGAATCAGGTGAACGATTTCCACCAGTTCTATGGAGCGGTTGAAAGTGCACATCGATTGCTCACGGAAAGGTTTTCGCTGAAATCTGGCCAGGAGCAGGGGAAAGCAGAGCAAGATGAGGACTTGGAGCTTCAGCAGGAGGGACAGAATGAAGTTCAGGAGGAAGGCTTACCCGCCAGCGATTGCGACAGCGCTTCCTTTACAAATGAACAGTTCCTCAGCGATGTCATAGCCCAGCAGGAGGAGCGAGGTGAATCTAAGGCACTGGAAGAGGAGTTCATCAAAGAAGCATCCGAACTCGAAACTGGCACAAAGGGTCTCCCAGATCCCGAACCCTTACCAACCTTACCCACGGAGGAACGTAGAGAAACGAGATCCACCACCAAAAGTAAATCCCACCAGGCACTCGAACCTACTCTCCCGCCTCCTCAAGAGAAGCCCAAGCCTGCAGTGACCAAGTCCAGAGCCAAGAGAAATAACTGCAAAGCAGAAGAAGCCcctcaaaaaacaaaacgttATGCGGACTATAAGCAGTGCATGCTGGAGATCGATGCCAAGATCGCCGCCCACATGCGACTCACCTGCGACGTTTGCCACGAGGGCCAGGAGACCTTTCTGCTCCTCTGCAAGCACATGCTGCAGGAGCACCGCCGGAAGGGGTATGCCATCTGCTGCAACAAAAAGTTCTACAAACGCTCCTTTCTCACCGATCACATCGATCGTCATGCTGATCCCGAGAAGTTTAAGTGCACGCAGTGCGATAAGCGGTTTGCGGACAAACAGTGCCTGAGGAACCATGAGCTGCTGAAGCATCATCCAGAGGAGGAGAAGACCTTTATCTGCGAGCAGTGTCCCAAAAGATATACCAAACAGTATCTGTTGGATCAGCATCGTGTTATCCACAAAGAGCGTAATGTTGTGTGCGATCTCTGTGAGAGGAGATTCCCCAACCAATCCCTTCTCTGCACCCACGTCAAGATGGCGCATGGCAACTATGGAACTATGTGCGACATATGCGCCCAGGTCATACGCGGTAGAGCCGCTTTCCAGCGCCATCAGCTGGAGCACGCTGGTGTTACCGAACCCAAGGTTCAGTGCGACATCTGTGGATCCTGGCACAAGAACAAGCATAGCCTCAAGAAGCATGTACGACGTCATAATGGCACTGCTGCTACTTGCGACCTTTGCGGAAAGGTTTCGCCCAACCGCAGCGCCATGTTGAGTCACCAACGATATGTGCATCTCACGGACAGGAAGCACGAGTGTGGCGTGTGTGGAAAGGCCTTTAAGAAGGCCATAACGTTGAAGGAACACATGACCATGCACACGGGCGAGGTGCTGTACAAATGTCTTCACTGTCCGAAGACGTTCAACTCGAATGCAAACCTGCACACTCATCGCAAGAAGTGTCATCCAAAGGAGTTCGAGGAGGCGCGGAAGGCACGGTCCGAGAAGCGAAAGGCAATCGATGAGGAGGCGCCCAGTGTCCTGGCCATCTCAACAGGCGAAGATGGCGAGACCCACAGCATTTTGCTGGCGAACAGCGACGAGGATCTAAAGGCCGACACTATCGAGTTCACCCTGTGTCTTAGTCCTGATACCACAGATTGA
- Protein Sequence
- MICRLCLNSVNDSDTIRIFEDVGLSLNVANVLAKYFWFEPKSDDPISTVICLACWNQVNDFHQFYGAVESAHRLLTERFSLKSGQEQGKAEQDEDLELQQEGQNEVQEEGLPASDCDSASFTNEQFLSDVIAQQEERGESKALEEEFIKEASELETGTKGLPDPEPLPTLPTEERRETRSTTKSKSHQALEPTLPPPQEKPKPAVTKSRAKRNNCKAEEAPQKTKRYADYKQCMLEIDAKIAAHMRLTCDVCHEGQETFLLLCKHMLQEHRRKGYAICCNKKFYKRSFLTDHIDRHADPEKFKCTQCDKRFADKQCLRNHELLKHHPEEEKTFICEQCPKRYTKQYLLDQHRVIHKERNVVCDLCERRFPNQSLLCTHVKMAHGNYGTMCDICAQVIRGRAAFQRHQLEHAGVTEPKVQCDICGSWHKNKHSLKKHVRRHNGTAATCDLCGKVSPNRSAMLSHQRYVHLTDRKHECGVCGKAFKKAITLKEHMTMHTGEVLYKCLHCPKTFNSNANLHTHRKKCHPKEFEEARKARSEKRKAIDEEAPSVLAISTGEDGETHSILLANSDEDLKADTIEFTLCLSPDTTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00539886;
- 90% Identity
- iTF_00605081; iTF_00486805;
- 80% Identity
- -