Basic Information

Insect: Drosophila subpulchrella
Gene Symbol: -
Assembly: GCA_014743375.2
Location: NC:9329699-9339749[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00063 0.036 14.2 0.1 1 23 101 123 101 123 0.98

2 9 1.7e-06 0.0001 22.3 0.6 2 23 125 146 125 146 0.98

3 9 0.00076 0.044 14.0 7.0 1 23 152 174 152 174 0.99

4 9 1.2e-06 6.7e-05 22.9 2.1 1 23 180 202 180 202 0.99

5 9 2.4e-05 0.0014 18.7 2.4 1 23 206 229 206 229 0.96

6 9 4.6e-06 0.00027 21.0 1.9 2 23 240 261 240 261 0.97

7 9 1.1e-07 6.2e-06 26.1 0.8 1 23 267 290 267 290 0.98

8 9 0.022 1.3 9.4 4.8 1 23 298 320 298 320 0.97

9 9 6e-06 0.00035 20.6 0.5 1 23 326 348 326 348 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00063	0.036	14.2	0.1	1	23	101	123	101	123	0.98
2	9	1.7e-06	0.0001	22.3	0.6	2	23	125	146	125	146	0.98
3	9	0.00076	0.044	14.0	7.0	1	23	152	174	152	174	0.99
4	9	1.2e-06	6.7e-05	22.9	2.1	1	23	180	202	180	202	0.99
5	9	2.4e-05	0.0014	18.7	2.4	1	23	206	229	206	229	0.96
6	9	4.6e-06	0.00027	21.0	1.9	2	23	240	261	240	261	0.97
7	9	1.1e-07	6.2e-06	26.1	0.8	1	23	267	290	267	290	0.98
8	9	0.022	1.3	9.4	4.8	1	23	298	320	298	320	0.97
9	9	6e-06	0.00035	20.6	0.5	1	23	326	348	326	348	0.98

Sequence Information

Coding Sequence: ATGGATAGGGGGGACTGGGAGAACGTGGAAACCTTGCTAATACAAGAAGTGTGCAGATTATCAGACTGCGAAAGTGAGAAATCGGATGAAAAAGAAATCCCTAAAGTTAAGACGGAAGAGAACCCAGGCGAATTGCCAGTGGAAGACGTTTCTTATAGAGATCACTTTTTCGAATGTGCAGTGAAAAACGAGCCACTCGAAGAGGACACATTTGAAGAAGACTACTGTATGTACGATTTTCTTGTAAAAGGGGAAGAATTTGAAGATGATTTACCGGGAGATAATGCTGACAGAACCCCGCATAAGTGTCCTGATTGTGCGATAGTATTCCCAGAAATCAAAGAACTAAAAGAACATGCTCGCATTCACAACAGGTGTTCTCTTTGTCCGCGGGGTTTCGCTAGTGCAAAAAATCTAAGACAACACTTGCGAACGCACACAGGCGAAAATCCCTTCAAGTGCTTCCACTGTTCGAAGACTTATAACTTGTGGCGATGTCTGAAGGCCCACCTGCAAACGCACACGGGAAAAGGAGCCTACAAGTGCAACAATTGCTTAAAGACCTTTTCTCAGATTGGAAAACTTAACAGACATATCAAAACGCACACGCGACCGCATGAGTGTCCCACCTGCTCTAAAAGATTTGGAGACCGTACGAATTTTCTCAAGCACATGGAATCGCAGCATTTGCGAAAACCCCGCGAAGATAAACCTGCTAGCTGTGACATTTGTGCGAAGACTTTTGCAAACAGCACCGGTCTCAAGAGACACATGCACACGCATGCGGTGGATTTGCCCTTTAAGTGCACCCAGTGCCCAAGGGCATTTGCCAATAATACGAATCTCAGGCGGCACACTCGAGTGGTCCATGTGGAACCAGGCAAACGCCCGTTTCAGTGCTCCCAATGCCCAAAGAGTTTCGGATGCTTTCAGAGTTTTAATCGACATCTTAAGCTTCATACAGAAGAAAAGCCCTTCGAGTGTTCCAAATGTCCGAAAGCTTTCGCAACCAAAAAATTACTAGATACCCATTTGAAGTGGCATTTGCCCACAAAATCTGGGAATTGTAAACTACGCATAGAAATGAAACACTTGCTAAAGAGCTCGGAAAAAGAAGCCTAA
Protein Sequence: MDRGDWENVETLLIQEVCRLSDCESEKSDEKEIPKVKTEENPGELPVEDVSYRDHFFECAVKNEPLEEDTFEEDYCMYDFLVKGEEFEDDLPGDNADRTPHKCPDCAIVFPEIKELKEHARIHNRCSLCPRGFASAKNLRQHLRTHTGENPFKCFHCSKTYNLWRCLKAHLQTHTGKGAYKCNNCLKTFSQIGKLNRHIKTHTRPHECPTCSKRFGDRTNFLKHMESQHLRKPREDKPASCDICAKTFANSTGLKRHMHTHAVDLPFKCTQCPRAFANNTNLRRHTRVVHVEPGKRPFQCSQCPKSFGCFQSFNRHLKLHTEEKPFECSKCPKAFATKKLLDTHLKWHLPTKSGNCKLRIEMKHLLKSSEKEA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -