Dsup004854.1
Basic Information
- Insect
- Drosophila subpulchrella
- Gene Symbol
- -
- Assembly
- GCA_014743375.2
- Location
- NC:5207903-5210254[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.064 3.7 7.9 2.8 2 23 184 205 183 205 0.96 2 12 4.8e-06 0.00028 20.9 4.1 1 23 211 233 211 233 0.99 3 12 0.00014 0.0082 16.3 2.7 2 23 239 260 238 260 0.97 4 12 9.2e-05 0.0053 16.9 4.2 1 23 266 288 266 288 0.99 5 12 1.2e-05 0.00066 19.7 1.2 2 23 293 314 292 314 0.97 6 12 0.0013 0.074 13.3 0.7 1 23 322 344 322 344 0.94 7 12 0.0015 0.089 13.0 6.5 1 23 350 374 350 374 0.98 8 12 2.8e-05 0.0016 18.5 4.8 1 23 386 408 386 408 0.99 9 12 6.3e-06 0.00036 20.5 3.9 1 23 414 436 414 436 0.99 10 12 2.3e-06 0.00013 21.9 3.3 1 23 441 463 441 463 0.98 11 12 1.2e-05 0.00067 19.7 4.3 1 23 469 491 469 491 0.99 12 12 9.5e-08 5.5e-06 26.3 2.8 1 23 497 519 497 519 0.99
Sequence Information
- Coding Sequence
- ATGGAGACACCAACGTGTCGTGTTTGCCTAAGTGAAAATGGAAATATGGTCGATATGTTTAAAGGGACACTTGAATCCGAATCCATTGTGAATATCGTTTCCCAGTTCAGCGGCTCTAAAATTGCAAGAGGGGATTTGTTCCCTGAAACCATTTGCTCTTCCTGCCTGCAGGACGCAAAAAATGCATTTGGGTTATCAAAAGAAGTGCCTCAGTTTGAGGAAGAAGTGGTCGAAGTGGAACCACATGAAGAGCCGTTCCAGTGTCAGGTGAAGAACGAGCCCCTGAATGAAGAGGAGTTGGACTATCAGCACGATGTCCAATTTAACGACGAAGTGGTGGATGAGGAGGAACCACCTACAAACCTGTTCCAGGTGAAGAACGAACCTCTTGAGGTCGATGAATTCGAAGAAGAAAACCGTCTTAATTCAAACAGCGACTTTGAGGAATTGGTAGACGAAGTTAAAGTCGAGGAGACTGAAATCGATAATGAAGAAGAAATAGACGGAGACGATGTATATTATGAGTCTCGCCATGGCGAGAGTAATAAGAAATGCTATGCTTGCCTGAAGacttttataattaaatgtgAACTCAAGGATCACTTGCAAACCCACACAGGATATCGTCCGTTCCAGTGCTCACACTGCTCCAAGGCTTATACAACGAATTTGAGTCTAAGGAATCATTTGCGCACTCACGCAGGAGGACTGCTCAAGTGTTCCCACTGCGAAgagacttttaaaaaaatagcCAGTCTTAGCACACACTTAAAAACGCACACTAGTGAACCATTGTTCAAGTGTTCTTACTGTTTTATGCCTTTTATTAACAAATCATGTTTTCAGGAACATATGGAAACCCACAAAAAACAGTTACGGTGCTCTCGTTGTTCACTGACTTTTACCTCAAATCCTGCTTTGCAAAAGCACTTGCGAACCCACGAAGAATCTTCCAGAGGATCGTTCCCATGTTCATATTGTCCAGCGAGTTTTTCACATGTTTCGAGTCGTAATAGACACGAAGTAATCCACTCAGAACTACGACCGTTCAAGTGTACCCATACCGACTGCTCATTGTCTTTCAAACGGAGTCAGTGTCTTCAAAAACACCTGATATCGCACTCATTAAAACAAATGGGACGCAATCAAACGCAGTTTAAGTGCCCCTACTGCGAAAAGTCTTTTACCCGGAAACTAAGTTGTCAATCACACATGCGAATCCACACAGGTGAAAAACCGTTTCAGTGTTCCCACTGCTTAAAGTCTTTTATCAGTAGTTCTTATCTTGATAAGCACTTGCGATCGCACTCAGAACGACTGTTCGAGTGTCCCCACTGTAAAAAGTCTTTTACACAGGATTTGAGTCTTCAGAAGCACTTGCAAACTCACATAGGAATAGGACAGTACAAGTGTTCCCAGTGCCCAAAGATCTTTCCCAGTAATCTACATCTTCAAAGGCACCTACACACGCATTCAGAAGTTCTTCTCTTTAAGTGCTCCCACTGTCCAAGGGCGTTCAGCGAGAAGGACAATCTTCAGACACATTTGCGAACGCATACAGGATAA
- Protein Sequence
- METPTCRVCLSENGNMVDMFKGTLESESIVNIVSQFSGSKIARGDLFPETICSSCLQDAKNAFGLSKEVPQFEEEVVEVEPHEEPFQCQVKNEPLNEEELDYQHDVQFNDEVVDEEEPPTNLFQVKNEPLEVDEFEEENRLNSNSDFEELVDEVKVEETEIDNEEEIDGDDVYYESRHGESNKKCYACLKTFIIKCELKDHLQTHTGYRPFQCSHCSKAYTTNLSLRNHLRTHAGGLLKCSHCEETFKKIASLSTHLKTHTSEPLFKCSYCFMPFINKSCFQEHMETHKKQLRCSRCSLTFTSNPALQKHLRTHEESSRGSFPCSYCPASFSHVSSRNRHEVIHSELRPFKCTHTDCSLSFKRSQCLQKHLISHSLKQMGRNQTQFKCPYCEKSFTRKLSCQSHMRIHTGEKPFQCSHCLKSFISSSYLDKHLRSHSERLFECPHCKKSFTQDLSLQKHLQTHIGIGQYKCSQCPKIFPSNLHLQRHLHTHSEVLLFKCSHCPRAFSEKDNLQTHLRTHTG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -