Dsup013681.1
Basic Information
- Insect
- Drosophila subpulchrella
- Gene Symbol
- -
- Assembly
- GCA_014743375.2
- Location
- NC:27565368-27567384[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.2e-16 3.5e-13 48.7 0.0 2 45 349 392 348 392 0.95 2 3 0.039 63 3.1 0.0 28 37 422 431 417 436 0.89 3 3 4.2e-20 6.8e-17 60.6 0.0 2 42 458 498 457 500 0.95
Sequence Information
- Coding Sequence
- ATGAATCACCTGAAGTGGATGGGACACTCGTCCACGATAATGGACATACAACGCTCGCTGCGCAACGACAACCACAACTGCGAGGTGATCCTGGCCTCCAGGGACGGCGTCCGAGTGCGCGCCCATCTCTTCGTGCTGAGCACCTGCAGTGAGCTGATGCGCAACATCCTGGTGGACGTGCCGCGTGGCCAGGAGGCCACCATCGTGCTGCCCGACATCCGAGGCGAGCTGCTGGAGAGCATGCTCTCCTTCATCTACATGGGCGAGACTAGCCTGCCCTCCGCCTCGCTGTCCGAGTTCCTGGAGGCCATCAACCTGCTGGGCATCAAGTCGGCCATCAGCTTCGAGTGCAACCCCTCGGCCAGTCCACCGAGCGCCGATGTGGAGAACGGTTCGATGGCCGTGGAGACGGCCAAGTCGATTACTGGCCTGCAAATAGCCGAAGCGGAGCtgctggaggaggaggaggaggcacAGCCGACTGTAACCGTGCCAGCGACTGTCCTTGCGGAGAGCCAGCATCAGCCCAATCACGGTAGCCGATCGTTGGAGTACTTGGATGTGTACGAGCCACCAAAGATCACCTACTCCATCGAACACATGGACGGCAATTCCAGCGGCAATCAATTCATCCTCACCGAAAACACGGGCACCTTCACCATCACGCAGGCCGCTACCAGTTTGTCCAAGATGGACAACGATGAGACGGCCACCAGCGGTGCTGAAGTGGAGCTGGTAGACGATGACGCGGAGGCGGAGATTACTGAGGATTCTGAGGAGCACGATACACAGATGATCGATGAAGAGTTTGCGCAAAGTGATCCCCTAATTGAGTTGGGTACTGCCACCGAAATGGACGACGACGAGGAAGTGGCCGGCGACCTGGTGGACGACGAATTAGAAGAAGAGAAGCCACGCAAGTTGGGTGGCGGAAAGCCGCGGGTCCGTCGCCCCGTTAATATTAAGACCGAGAAGCGATCGCCCCAAAAGCCAACTCGACTCCAGCAGTTTGTAGCGCTTAAGCGAGAAGTGAAAGACGATATCAACGATGCTTTGGATCTGGCGGCGGACGCTGTAATCCTAGAGGGATTGAGCCTGCAGAAGGCCGCCGACCGGTTCGACATTTCCAAGACGGTCCTGTGGCGACGCGTGCGCACCAATCCCGCCTACATGCGGAACAACCGTGAACGACCATCGCTGATCGAAGCCTACGAGCGGCTGAAGAACGGAGATTCACTGAAGAGCATCAGTACGGAGTTGCAGATCCCCATGTCCACGCTGCACCGGCACAAGGTTCGGCTGTCGGCCCAGGGACGCCTGCCCGACTTTGTGGCCTGCCGCCGGCGGGACAGTACGCCCAAGGACGAGCTGCGGGACAAATTGGCCAAGGCAGTGCACGCCTGCCTAAATGAGGGAATGTCCCAGAACCATGCAGCCAACCTTTTCGAGATCCCCAAGAGCACGCTCTGGCGACACCTGCAGCGACGTATGTCGAACCAGGACCGAAAGGTCAAGAAGGAGCTGCAGGACGAGTACGACGAAGATATGCTAAATTAG
- Protein Sequence
- MNHLKWMGHSSTIMDIQRSLRNDNHNCEVILASRDGVRVRAHLFVLSTCSELMRNILVDVPRGQEATIVLPDIRGELLESMLSFIYMGETSLPSASLSEFLEAINLLGIKSAISFECNPSASPPSADVENGSMAVETAKSITGLQIAEAELLEEEEEAQPTVTVPATVLAESQHQPNHGSRSLEYLDVYEPPKITYSIEHMDGNSSGNQFILTENTGTFTITQAATSLSKMDNDETATSGAEVELVDDDAEAEITEDSEEHDTQMIDEEFAQSDPLIELGTATEMDDDEEVAGDLVDDELEEEKPRKLGGGKPRVRRPVNIKTEKRSPQKPTRLQQFVALKREVKDDINDALDLAADAVILEGLSLQKAADRFDISKTVLWRRVRTNPAYMRNNRERPSLIEAYERLKNGDSLKSISTELQIPMSTLHRHKVRLSAQGRLPDFVACRRRDSTPKDELRDKLAKAVHACLNEGMSQNHAANLFEIPKSTLWRHLQRRMSNQDRKVKKELQDEYDEDMLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00605685;
- 90% Identity
- iTF_00602702; iTF_00604954; iTF_00604764; iTF_00486489; iTF_00486667;
- 80% Identity
- iTF_00602702;