Basic Information

Insect: Drosophila suboccidentalis
Gene Symbol: indra
Assembly: GCA_037043435.1
Location: JBAMBK010000397.1:398942-401242[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 4.3 3.2e+02 2.4 1.2 1 8 8 15 8 16 0.91

2 8 0.039 2.8 8.8 3.0 1 23 245 268 245 268 0.96

3 8 0.00031 0.022 15.4 0.3 2 23 277 298 276 298 0.96

4 8 0.00024 0.017 15.8 0.7 1 23 370 393 370 393 0.98

5 8 3.6 2.6e+02 2.6 4.6 1 23 401 424 401 424 0.92

6 8 0.001 0.076 13.8 2.4 1 23 663 686 663 686 0.98

7 8 0.0085 0.62 10.9 0.3 2 19 691 708 690 711 0.92

8 8 0.26 19 6.2 0.2 5 23 724 743 719 743 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	4.3	3.2e+02	2.4	1.2	1	8	8	15	8	16	0.91
2	8	0.039	2.8	8.8	3.0	1	23	245	268	245	268	0.96
3	8	0.00031	0.022	15.4	0.3	2	23	277	298	276	298	0.96
4	8	0.00024	0.017	15.8	0.7	1	23	370	393	370	393	0.98
5	8	3.6	2.6e+02	2.6	4.6	1	23	401	424	401	424	0.92
6	8	0.001	0.076	13.8	2.4	1	23	663	686	663	686	0.98
7	8	0.0085	0.62	10.9	0.3	2	19	691	708	690	711	0.92
8	8	0.26	19	6.2	0.2	5	23	724	743	719	743	0.90

Sequence Information

Coding Sequence: ATgagcaacaaaaatgaaatatttcaatgcAATTACTGCCAAAAGGAGAAGGAAGgcaaacatatgtatacaacTAGAATGCAATTTGCAGGCAGCAAGATTATTGACATTCTACAAACAGTCGCACAATGCAAAATTCCACTGAGCACGCCCATCAAAATGTGTGGCATGTGCGCCTCGACATTGCTTTCCACAACGGGCGTCATCGAAAAAGTTGGGCACATGGTCTCAGATCTAATGGGGACTAATCAGCCACAAGCTGTGGAAATGCAAAAAGAGGCTGACTTGCCAAACTCTGAGCCAGAGATagtggaggtggaggaggtACAGGTAGAGCCATCGAATGCCAAAGCATCCCCAAAGAAAAGCGCTCCAACTTTAAATGGAACGCCAACTGCAGAACAGCCAAACGCCAAAAAGCCGGCAGCTAAAGAAAAAGCTCTGTCTAGTCCGACTAAGCAACCGAAGAGCATCAAGGATCAAGGCACACCAAATGTGCCATCAGCTGAAACTCCTAAGAAGCAGCCCAAGGAACTGCAAACCAGCTTTAAGGTGAACCTAGACGACAGTCTAAAGGATGTGATTAAGCTGACTCCTGCCAAGGAAGTGTCTAAGAAGCACAAGGACTTGACTCAACTGTTTGGCAACAGCGTTAATCATATACCTGACAGCGACGACGGAagcgatgacgatgacgacatCCCTGACAACCCAGAGGATAAGGATATGGGCTTTGAATGCAAGCTATGTGACTATAAAACCACTTTAGCGGTTAAATTTAAGCATCATCTTCGTGATAATCATGGACAAAAGCGTCCACGCATCTTGAACTGCTCTGTGTGTCCCAAATCGTTTGGTGTATTAAAAACTCTAAATAAGCATTTGGTAACTCACGGCATTGTGCCAAAGCAAGCTGATGTTGAGGCCAAAAAAGAGCATCCCAAAACTGGAGATGCACAACTAGCAGTTCTAACTGCCTTGaagccaacaacaaagccGAAGCCCATACTCAATGCTGAGCTTACATTTGCCATTAAAGACACCAACTCATCCACACCAAAGGCCAACgaggaacagcagcagcagccccaACAAGCAGAGCCGATATACAAATGTGACATGTGTGAGACTCAGACCAAGGTGCCAAAATACCTTCAGGAGCACATGAAGACAGTGCACAACATCGAGAAGCCCAGGATCTTCAAGTGCGGTGCCTGCAATACTACTTTCATGCACAAGACTACAAGGGATCGCCACTTTATGAATAAGCACTGCGGAGATCAGGGCCAGGACAAGGCAACAAAGACACCAGCCCGTCGTAAGACCATCGATGTGCGTCCTACCATCACCATCAAGGTACCGAAGCCAGCTAAAAGTCCAATTCGGCGTAAAACGGTTGATGTGAGGATTCTCGAGTCGCCGCTGGCGAAGAAGAAAACTGAGCTGGAAGTCATCGTGGGAACGCCGACCAAGAAAGTTAAAAATGAGGACGCACATACTCCCAATCAAATAAATGATTCGATGAAGGCAACCGATTCGCcatcaaagaaaaaattaaaagagaaCCACAAAGATGAAGCTGCCAACTTCTTAAAAGATGTTTTAAAAGCATCCGAGTCACCAGGCAAAAAGAAATCCAGGAAAGAGGACGCTGACATCACGTCAATCCAGCTGGACGACACGGCACTTGAAGGGTCCGTGGCTGGCACGCCGAaaaagtccaagtccaagaaGGGATCAGACATGCTGGACAATCCACAAGTGACTCCAATTGAAAAGAAGTCAAACAAAAGAAAGtcggaatcggaatcacaAGTCGAGTTAGTGCCAAGTCCACTAAAGAAATCAAAGCtggaaaagagaaagaaatcCGAGTGTGAGGTGATTGAGCTGCTGGACGAGGTCAACATAAATCCAGTGCCTCACAAGCGTGAAATGCTCGAGTCGCAGTCCGAGTCACAGCTCGAGTCACAGCCCGAGTCACAGTTTAGCTGCAGCCAATGCAGCAAGGTGGTCAGCACTCGCAAGCGTTTGGATTCCCACATGAGGAAGAAGCACAATCCACTCCTCAACTGTCGCAAGTGCGGGGAGAACTTCTCCGACAGCGAGAAGTTTATCAATCACTTTGCCAGCTGTGAAGATGCCAATGGATTGGCTTGTGGCGTCAAGAGCTGTGACAAAATATTCGCAGCACCAAATTTCCTAAGCTCACATTTGAAAAAGAAGCACAAATTTGACTAg
Protein Sequence: MSNKNEIFQCNYCQKEKEGKHMYTTRMQFAGSKIIDILQTVAQCKIPLSTPIKMCGMCASTLLSTTGVIEKVGHMVSDLMGTNQPQAVEMQKEADLPNSEPEIVEVEEVQVEPSNAKASPKKSAPTLNGTPTAEQPNAKKPAAKEKALSSPTKQPKSIKDQGTPNVPSAETPKKQPKELQTSFKVNLDDSLKDVIKLTPAKEVSKKHKDLTQLFGNSVNHIPDSDDGSDDDDDIPDNPEDKDMGFECKLCDYKTTLAVKFKHHLRDNHGQKRPRILNCSVCPKSFGVLKTLNKHLVTHGIVPKQADVEAKKEHPKTGDAQLAVLTALKPTTKPKPILNAELTFAIKDTNSSTPKANEEQQQQPQQAEPIYKCDMCETQTKVPKYLQEHMKTVHNIEKPRIFKCGACNTTFMHKTTRDRHFMNKHCGDQGQDKATKTPARRKTIDVRPTITIKVPKPAKSPIRRKTVDVRILESPLAKKKTELEVIVGTPTKKVKNEDAHTPNQINDSMKATDSPSKKKLKENHKDEAANFLKDVLKASESPGKKKSRKEDADITSIQLDDTALEGSVAGTPKKSKSKKGSDMLDNPQVTPIEKKSNKRKSESESQVELVPSPLKKSKLEKRKKSECEVIELLDEVNINPVPHKREMLESQSESQLESQPESQFSCSQCSKVVSTRKRLDSHMRKKHNPLLNCRKCGENFSDSEKFINHFASCEDANGLACGVKSCDKIFAAPNFLSSHLKKKHKFD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00585566;
90% Identity: -
80% Identity: -