Dsub003364.1
Basic Information
- Insect
- Drosophila suboccidentalis
- Gene Symbol
- -
- Assembly
- GCA_037043435.1
- Location
- JBAMBK010000483.1:1148445-1152692[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0036 0.26 12.0 0.6 2 23 275 297 274 297 0.94 2 9 0.015 1.1 10.1 4.6 2 23 430 452 430 452 0.91 3 9 0.0069 0.5 11.2 2.3 3 23 535 556 533 556 0.94 4 9 0.00038 0.027 15.1 0.7 2 23 798 820 797 820 0.96 5 9 0.0016 0.12 13.1 0.1 2 23 877 899 876 899 0.93 6 9 0.012 0.86 10.4 3.6 2 23 948 970 947 970 0.96 7 9 0.12 8.5 7.3 4.2 2 23 984 1006 983 1006 0.92 8 9 0.017 1.3 9.9 0.6 3 23 1066 1087 1065 1087 0.96 9 9 0.054 3.9 8.4 0.6 1 23 1179 1201 1179 1201 0.99
Sequence Information
- Coding Sequence
- ATGGCAGCATCCATATATGCCACCCCACCGCCGGATCTGAGCAGCGAGGACACTGCGCTCTCCGATGTCTCCAACTCATCCACACTCAACACAAAtcgcggcggcggcagcagcagcaacaacagcaatcacaACAAtataagcaacagcaacaacaacaacaacagtcataTTTTGCAGCCACATGAAGCcacaacagaagcagcaacagcaacggcagcagcagccacaacaacagcaacaacaacaacaacaaccaacacatCAGCAATGTCACCCACTCAACAAGCACTCTTGGACACGGAGTTCAAGTCAAAGTCGCCGCTGTTGAACGCCACGGGAAGCAACACAAATGAGGCAGACATGGAAGCTGAAGCAGATGAggcagagggagagggggaaTTGGATCAGACGGCAATGGCcgcaatggcagcagcagcagcaaatgcagCAGCCATGCAGCTGCAACTCCTCGAAGCGCTCAGCGATGCGGCCAAAAAGCGACGCAAGCAACACAATCCCAGTCGCCTCGAGGCGCTCAATTTGAGCGGAGGAGGCGAGACGGAAGAGggggctgttgctgctggcggcggcggcggcaacaCAGAGGAGTCGGTCATCGACTATGAGGAGAAGCTGTCGAAAATGTTGCTGCCCAAGTCGATAGTGAAACTGAAGCAAACATTcgagctgctgcagcagcaaaagttgcAGTCCGCAGACATATCAGAAAtggaagcagaagcagaagaggAGAAACAGCgtcaggagcagcagcagcaacaggagcaacaacatTCCATGATGAATCCCTATCAGACCTACTGCAAACAGTGTGGTGAGAATTTCGAGACAGAATTCAAGCTGAGTCTGCACATGTTGCAGGATCATcagcaacaagagcagcagcaacagttgtcaAACGATGAGCCCATGGACATGTTGGGCTCCTTTAAAGTAAAGCTAGAGCGTGCCGACAGTCCAACACAGCTggaactacaacagcaacaacaacagctgcagcagcaacagcagcaacagcaattagAACTGGCCAATGGACAtgggagcagcaacaacaaggagcATGAACTCTGGCTGCAGGCAAtggcacagcagcagcagcaacaacaacatcagcaacaagcTGCCTTGCCGGGCATGCCGCCCGCCTTTGGCTTCTCGCCGGAGGCAGCTGCTCTGGGCTGGCCACTGCTCGGCATGCCGGGCTTCGCTGGCGTCGAGGGTCTCAATCGACCGCCGTTGCGCATCTTCAACCCGGAGGCATATTGCGAGCTGTGCAACAAGGAATTCTGCAACAAGTATTTCCTGAAAACGCACAAGGCCAACAAGCATGGCATATTTGATCCAGCCGGTGATTTGACAGCGCCCAGCAAcagcattaacaacaacaacaacatcagcatgagcagccacaacaacaacaacagcaataacagcagcaacagcaacaataacagcaacaacaacagcaacacttcGGGGAGTGTCGCCACTTCCATGTTCCAGCAACTGCAGATGCCGCGTGAGCCACCAAAGCCAGAGCCACAGCTGACACCACCAGCACCGCCCACCGTGCACTGTGACATCTGCTCCAAGCGCTTCACCAACGTCTTTGCCATGCGTCGTCATCGCGCCAAGCAGCATGAAACTGCCACAAccacagccacgcccactgccACGGCCACGCCCTCGCCGCGACGGGGCAGCCCCAGCGAGCAGACGTCGCCACAGTCGCAGCATGTGAAGCTGGAGCATCCCCAGGCGGCGCTGGATGCACTGCCCGCTGAGCCGAAGCCCTATCAGCTGCCCGAAGGCTTTCGCGAGGACTTCACCCtggagcaggaggaggtgCCGTTTGCACCACCGCCACGCAAGTTGCCgccgcagctgcagcaacaggcACGCGAATCCAACGCCGCACCGGACAAGCTGCGTCGGCTCGGCGTGCTGCTCCCGGAGGCATTCTGCGAGCTGTGCTGCAAGGAGTACGCCAACAGATACTTCCTGCGCACGCACAAATGGAAGCGACACGGCGTCTTTGTGCCGCCCGAGGATCTATCCAAGGAGGAGCAGCCACTAATGTCAGCCGGCTGGCCATTTATGCCACTCAATCTGATGCTGGCCAAGGCAGCGGCGGatcaggaacaacaacaacaacagcaacaggagccGGAaacggagcagcagcagcagcaggaggaggagttgCAATCAGAGGAACAGCAGCAAAGCAAACGCATCAAACTGGAGCCCTTCGAAGATTCAATGCCGGAGAAGACCGACAACTCGGTGATGGGATTGCAGAATCTGCAAAAGTTGCAGTCGATGTTGCAGCAACTCAACGACTTCAATGGCAAGCGACCTTTGCCCTGTCACCTCTGTGGTCGCGAGCTGGAGCATCAATACGCACTCCGGGCGCATCTCATGACGGAGCACGCTGGACAATTTCTAGCCGAAGGACATCCCATGCTctaccaacagcaacagcagcaacaacagcagcagcagcagcagcagcaacagttgccgctGAAGCTGTCGCCTGttggtggcggcggcggctcaCCGCTTAACGcctctgccacgcccacaccgcAGGAGCTGCGCTGCCCGCAGTGCGAGCGCGACTTTGCCACAGCTCAGGAATTCAAGCAACATATCGCCGAGGTGCATCTGGGTCGCATTCCCGGCACCAGCCCCCTGAGGGAGGGCTTCTACACGCCCGAGCGTGCCACCGTGCCaggagcaactgttgctgctggcggaGCACCACCTGGTCCGCCACGTGCGGCATACACGATCACTCCGACGTCCAGTTACTGCGAGATCTGCAACAAGGAGCTGTGCAACAAGTACTTCATGAAGACGCACATGCAACGCATGCACGGCATCGAGATCGAGAACGGGGCGCAGATTGGCGGCGTTGTGTGCAACATATGCAACAAGGAGCTGTGCAGCAAGTACTTTCTGCGTGTGCACAAGCACAACACACACGGCATCATTGAGGATGGAGCTCCGTTGCCACAACCGCGTGGTCAGAACGGTCTAAAGGTCGacgcacagcagcaacagcagcaacagcaacagcagcaacaacagcagcagcagctgatggAACAGGATTTGAACTTGACACCGCTGTCAGGTGATTCCGGTGGCAACAACGAGCTGTGTCCACTGTGCGCCCGTCAATTCCGCAGCTTCAAGTGGCTTCGCACGCATCTGATGAACGAACACGGCGGCGCTGGCGTTGAGAAGCTGCGGGAATTGGAGGCAGCAACATCAGTGGCTGCCACTGGCCACAGGAGCAAACCCAACAGTCCCACGCTCAAGATACCCAATGGCCACTCCACTGTCCCACCCATCGCCAGTCCGGCCAACAATCTCGCCCAGGCGCTGCAGAatgcacagcagcaactgtttgGCCAGATGCAATTGCCGAAGGGAATGCaactgccgctgccgctgccactgccgGGCATGTTTGAGCAGACACCGCGCTTCAAGGAATACCAGTGCTCCCTGTGTCCATTCACCACGCCGTACTATGCGTTCCTCTTCATCCATGAACGCTCCCATGCGCTGctcaacaacggcaacggcgacgGCGGCGATGGGGAGACGAACGTGGCCGCCGAGGCGGAGACCAGGGATAGATCCAAGGCCAGAAGCAAGCCAAATCGAGACAGGCCCGATGTCGAGCACATCGAGCCCACGAATCTGACTAccaaccataacaacaacaacagcagcaacagcagcagcagcaacagcaacaacagcaacataaaAGCTGCTCGCACTCCTCCCACGCCCACAACACCCCACGCCTCGCCGGGCACAGTCAATCCTCCGCCAGTTGCTGCCTCCCCCAAAGCACGCTCCGCAACAGTGACTCCAactccgattccgattccgactCCAACTCCCACACTACTCCACAGCACTCCCAGCAAACCCAACACGCCCAACGGCTTTGGCGCCCAACGTTCGGCGGCCACGTCGCCCTTCGAGATGTGCAGCGATCTGGCCAACGGCAGCGGCAAGCCCGCCAGCTATGCCCAGCCCATCAAGTCGGAGGAGGCATACCAGATGCAGGCCTTCCACTTGGCTcctgccgatgccgatgccgaggGTCTCTTTGCCCCCGCCCTCGTCTATTTGCCGGTGCGGGCTCGAGCCTCGGAGTCGACCACGTTAAGCTTCAGGCTGACACCAGCCTAA
- Protein Sequence
- MAASIYATPPPDLSSEDTALSDVSNSSTLNTNRGGGSSSNNSNHNNISNSNNNNNSHILQPHEATTEAATATAAAATTTATTTTTTNTSAMSPTQQALLDTEFKSKSPLLNATGSNTNEADMEAEADEAEGEGELDQTAMAAMAAAAANAAAMQLQLLEALSDAAKKRRKQHNPSRLEALNLSGGGETEEGAVAAGGGGGNTEESVIDYEEKLSKMLLPKSIVKLKQTFELLQQQKLQSADISEMEAEAEEEKQRQEQQQQQEQQHSMMNPYQTYCKQCGENFETEFKLSLHMLQDHQQQEQQQQLSNDEPMDMLGSFKVKLERADSPTQLELQQQQQQLQQQQQQQQLELANGHGSSNNKEHELWLQAMAQQQQQQQHQQQAALPGMPPAFGFSPEAAALGWPLLGMPGFAGVEGLNRPPLRIFNPEAYCELCNKEFCNKYFLKTHKANKHGIFDPAGDLTAPSNSINNNNNISMSSHNNNNSNNSSNSNNNSNNNSNTSGSVATSMFQQLQMPREPPKPEPQLTPPAPPTVHCDICSKRFTNVFAMRRHRAKQHETATTTATPTATATPSPRRGSPSEQTSPQSQHVKLEHPQAALDALPAEPKPYQLPEGFREDFTLEQEEVPFAPPPRKLPPQLQQQARESNAAPDKLRRLGVLLPEAFCELCCKEYANRYFLRTHKWKRHGVFVPPEDLSKEEQPLMSAGWPFMPLNLMLAKAAADQEQQQQQQQEPETEQQQQQEEELQSEEQQQSKRIKLEPFEDSMPEKTDNSVMGLQNLQKLQSMLQQLNDFNGKRPLPCHLCGRELEHQYALRAHLMTEHAGQFLAEGHPMLYQQQQQQQQQQQQQQQQLPLKLSPVGGGGGSPLNASATPTPQELRCPQCERDFATAQEFKQHIAEVHLGRIPGTSPLREGFYTPERATVPGATVAAGGAPPGPPRAAYTITPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVVCNICNKELCSKYFLRVHKHNTHGIIEDGAPLPQPRGQNGLKVDAQQQQQQQQQQQQQQQQLMEQDLNLTPLSGDSGGNNELCPLCARQFRSFKWLRTHLMNEHGGAGVEKLRELEAATSVAATGHRSKPNSPTLKIPNGHSTVPPIASPANNLAQALQNAQQQLFGQMQLPKGMQLPLPLPLPGMFEQTPRFKEYQCSLCPFTTPYYAFLFIHERSHALLNNGNGDGGDGETNVAAEAETRDRSKARSKPNRDRPDVEHIEPTNLTTNHNNNNSSNSSSSNSNNSNIKAARTPPTPTTPHASPGTVNPPPVAASPKARSATVTPTPIPIPTPTPTLLHSTPSKPNTPNGFGAQRSAATSPFEMCSDLANGSGKPASYAQPIKSEEAYQMQAFHLAPADADAEGLFAPALVYLPVRARASESTTLSFRLTPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00529142;
- 90% Identity
- -
- 80% Identity
- -