Basic Information

Insect: Drosophila suboccidentalis
Gene Symbol: odd
Assembly: GCA_037043435.1
Location: JBAMBK010000866.1:151281-152650[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 2.8e-06 0.0002 21.8 2.5 1 23 244 266 244 266 0.98

2 4 1.2e-07 8.5e-06 26.2 1.8 1 23 272 294 272 294 0.97

3 4 4.2e-06 0.00031 21.3 2.2 1 23 300 322 300 322 0.98

4 4 2.3e-06 0.00017 22.1 5.7 1 23 328 350 328 350 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	2.8e-06	0.0002	21.8	2.5	1	23	244	266	244	266	0.98
2	4	1.2e-07	8.5e-06	26.2	1.8	1	23	272	294	272	294	0.97
3	4	4.2e-06	0.00031	21.3	2.2	1	23	300	322	300	322	0.98
4	4	2.3e-06	0.00017	22.1	5.7	1	23	328	350	328	350	0.98

Sequence Information

Coding Sequence: ATGTCTTCTACTTCGGCCTCGCCCATCAGCAACATAACCGTGGACGACGAGCTTAACATAAGCAGAGAACAAGATTTTGCCGAGGAGGATTTTATAGTTATCAAGGAGGAGCGCGAGAGCAGCTTGTCGCCCATGTTGACGCCACCGCACACGCCCACCGAGGAGCCACTGCGTCGTGTTGGCAACACGGCCACAGCAGTCGCTGATGAAACGGTGGCAACACAGTTGCATATGCGACACATGGCGCActatcaacagcaacagcaacagcagcagcagcaacatcatcagcagcagcagcagcaacaacagcaacagcatcgcCTCTGGTTGCAGATGCCACATCAGCAACATCCACATGGCCATTATCCGGTCTATGCCGCTGGCAATGCTGATCCTGTGGCTGTGCACCAACAGGCATTGCTGATGAATCAGTGGATACGCAATGCTGCCATctaccagcaacagcagcagcagcaacaacaggcggcggcagcagcagcagctcagggacatcatcatcaccatcatcatccacATCATCCGCATCATCCGCCAACACATGCCCATGGTCATCCCCATGTGCGTCCCTATCCCGCTGGACTGCATAATCTTCATGCCGCCGCTCGTCACTTTGGCGTCCTGCCCAATCTGAAGCTGAGCGGTGcggcaggagcaggagcagctggTGCCGCAGGTGCAACTGGCAGCACTCGCCCCAAGAAGCAGTTCATCTGCAAGTACTGCAATCGCCAGTTCACCAAGTCCTACAATCTGCTGATCCACGAGCGAACTCACACCGATGAGCGTCCCTATTCCTGTGATATCTGCGGCAAGGCCTTCAGGCGTCAGGATCATCTGCGAGATCATCGCTACATTCACTCGAAGGAGAAGCCCTTCAAGTGCAACGACTGCGGCAAGGGATTCTGCCAATCGCGTACTCTGGCCGTGCACAAGGTCACCCACTTGGAGGAGGGTCCACACAAGTGCAACATCTGCCATCGCAGCTTCAACCAGCGCGCCAATCTCAAGAGTCATCTGCAGAGCCACAGCGAGTCggcaaccacagcagcagcagcagcatcaccaACTCAGGCACCACCAACACAGGCACCACCTGCACAGTTGGTCAGCCCCGTGGATCTGTCCTCATCCGGTGGTGGCTCCATCACCACGGAGAGACCCAAACGTGCCCTTGGCTTCACCATTGATGAGATCATGAGCAGATAG
Protein Sequence: MSSTSASPISNITVDDELNISREQDFAEEDFIVIKEERESSLSPMLTPPHTPTEEPLRRVGNTATAVADETVATQLHMRHMAHYQQQQQQQQQQHHQQQQQQQQQQHRLWLQMPHQQHPHGHYPVYAAGNADPVAVHQQALLMNQWIRNAAIYQQQQQQQQQAAAAAAAQGHHHHHHHPHHPHHPPTHAHGHPHVRPYPAGLHNLHAAARHFGVLPNLKLSGAAGAGAAGAAGATGSTRPKKQFICKYCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHRYIHSKEKPFKCNDCGKGFCQSRTLAVHKVTHLEEGPHKCNICHRSFNQRANLKSHLQSHSESATTAAAAASPTQAPPTQAPPAQLVSPVDLSSSGGGSITTERPKRALGFTIDEIMSR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00471119;
90% Identity: iTF_00534090;
80% Identity: -