Dsub010108.1
Basic Information
- Insect
- Drosophila suboccidentalis
- Gene Symbol
- -
- Assembly
- GCA_037043435.1
- Location
- JBAMBK010001570.1:366020-368617[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.015 1.1 10.1 3.7 3 23 297 317 295 317 0.97 2 12 0.0057 0.42 11.4 0.6 1 23 323 348 323 348 0.92 3 12 0.0056 0.41 11.5 0.7 2 23 356 380 355 380 0.93 4 12 0.0011 0.081 13.7 2.1 1 23 392 414 392 414 0.97 5 12 2.3e-06 0.00017 22.1 0.1 1 23 421 443 421 443 0.98 6 12 0.015 1.1 10.1 0.2 1 23 449 471 449 471 0.97 7 12 0.078 5.7 7.8 3.0 1 23 477 500 477 500 0.97 8 12 0.006 0.44 11.4 4.6 1 23 506 528 506 528 0.97 9 12 0.12 9 7.2 5.3 2 23 535 556 534 556 0.96 10 12 0.00014 0.01 16.5 0.2 1 23 667 690 667 690 0.95 11 12 0.12 8.7 7.3 1.3 1 21 696 715 696 718 0.75 12 12 1.9e-07 1.4e-05 25.5 3.0 1 23 724 746 724 746 0.98
Sequence Information
- Coding Sequence
- ATGGATGTGGCGAGGACGTACTCGATACACACGCTGTGTCGCATTTGCCTGAATCTGCTGCAGAACGATGCTGCCTACGATTTGTATATGGTACCAGGTCTGGCCAAGAAACTGTGTCTGTGCACGTCGCTGTCTGTGGAGCAGAACGACGGGTTCCCCAAGAATCTGTGCACCAGCTGCTATGCCCGTTTAAATGATATGCATGACTTTCAAAAGCTGTGCGTCGATTCGGTGCAAAAGTTCCAGGACATGGTCGCCAGCAACGCCTTCACATGCCAATCGAACTTCGATGTCTTGGATCCGAGCACATCGGCCCATGATCTGCCCAATGAGGATGAGGATCATATCAACTTTGATCCGCTGTTGAATCACAAAATGGAATTGATTGAGAATGAAGAGGATGTGTTCAAAATGCTCGAGGATGTGGACAAAGAGGCCGAGGAAGTGGAAAAGGAggtcaaacaaacaaataaacagaacAACAAGCAAAGGGAacgggacagggacagggatgCGAAGGAGCCCATGACAACAATCAACATGTTTAACGAGGACAGCTCCTCGGCGGAAAGTGGCAATGACAACGATCGCGACATGGACTTTGAGCCCAACAGCAGCGACGATGACATTCCTCTGGCGCAGCGGATGCGCAGCAAGGCCACCGCCACCAAGAACACCCGAGCAgccaagtccaagtcgaagCCGAGGAAGAAACGCGTCACAGATAATGAAGATGAGGATGATTTCAGCACATCTGCATCCTCCTCGtccgatgatgatgatgacgacgacgatgatgatgatgatcccGAGCACAAGGGCCGCAAGGAGAAACCAAAACGCAAACGGATTCCAGTTGGCGAGCGTCATCTGCATCGCATCATCGACTGTCACATCTGTCATCAGAAGTTCAAGAAGGCCATACGCTACGAGGAGCACATGAAGTACCACAACGATCTGTTGCCGTTCCAGTGCAAGGTGGAGAGCTGCAAGAAGGGCTTCACCACGGCCAATGGACTGCGCATCCATGTGGATCACGCCCACACCGAACTGTCCGAGGTGCATGCCTGCAGCGTCGAGGGCTGTGGCAAGACATTCCCACGCATCCGTCTCCTCACCTTCCACATGAAGAAGGTGCACAACATTTCCAAGTCGGCGGCGCCTTTGAGAGACTTCCCCTGCACGGAATGCGAGACGGTCTTCCGTTGTCCAACCGCACTCAAGAAGCACATGTACAAGCACACGGGCGAGGAGCTGCCCTATCCGTGCAACATCTGTGGCAAGCGCTTTGTCATCAACAGTGCCCTCAGGGATCACTTGATGCGACATGCTGGCATCAAGAATCACGTGTGTCCCTACTGTGGTGTGGGCAAGACCACCAGGCAGGAGTGGAACGCCCACATCTTGACGCACACCAAGGAGAAGAAGTTCAAGTGCCGGCAATGCGATCATGCCTCCCACAACAAACAGGCGCTGTCCAATCACGTCAAGGTCGTCCACATGAAGATCAAGAATTTTGCCTGCCAATACTGTGGCAAGACATTCGGCAAATCCCATGCCTGCAAGGTCCACGAACGAACGCACACGGGCGAGAAGTGCTGCGAGTGCAAGATCTGTGGCAAGATCTTCCTCTGCGAGAAGAGTCTCACCAAGCACTTGAAGACGCACGAGAAGCGCGATCTGCCGCCCGTGGATATCCATCGTCCGCTGAACATTccgctgccagttgccagtcaTCTGCCCGATCatatgcagcagcagcagatgccGGGCGATAATCTAATGGTGGGTCAAAATGCGGCCGATGATTTGCTCAAGGCGTGTGGCGGTGGACCACCAGGAGTGGGCacagcagctggagcagctAAGCCCAAGAATTCCCGTCGTGTGCAACGGGTGGACATCTCTCAGCTAGCTGGCACCTCTGTGAATCCCATACCATCGGTATCAGTGCCCTCCTGGTCGCCACAGGTCAACTTCACCAAGAAGGAGGGCCAACACATTTGTCCTGGTTGCGGACGTGGCTTCAATAACATTGGCAACATGAAGCTCCACTACAAGATCATACACGAAAAGGTCAAGGATTTTGCCTGTCGCTTCTGCCCCAAGCGCTTCTCCAAGGCACAAATCTTGCGGCATCACGAATGGATACACACCGGCGAGAAACCCTTCGAGTGCAAGATTTGTGGCAAGCATTTCCGCCAGGAGACGGCACTCAAGAAGCACATCAAGACGCACGACAAGCCCAACAGACGCCACTATCCGGAGAAGACGGATCCGTCGCCACCATTTCAGCATAAAATCGAACCGCGTGAAATCGATCGTGAGCCAAGGAACTATGAACAGTATCAGGATCCAGCTGCCGAGCGAGCGGCGGCTACAGCGGAGCTTTTGGCCCATCAGATCGAGGAGAACGAGGCGAAGCGCAAGGCGGACATTGAGCGGCGAAAAATTCAGGAAGCCGCCTGTGAGCAGCTCAACAAATTGCAGAAGCAGCAGGAAATTGAAAAGGCGACCACATCCTATGATGGTTACTATGCACAAAAGGCTCAGGCTGAAGGCATCAGCGTGGACGCTCTCAAGATCGATCATGTGTAA
- Protein Sequence
- MDVARTYSIHTLCRICLNLLQNDAAYDLYMVPGLAKKLCLCTSLSVEQNDGFPKNLCTSCYARLNDMHDFQKLCVDSVQKFQDMVASNAFTCQSNFDVLDPSTSAHDLPNEDEDHINFDPLLNHKMELIENEEDVFKMLEDVDKEAEEVEKEVKQTNKQNNKQRERDRDRDAKEPMTTINMFNEDSSSAESGNDNDRDMDFEPNSSDDDIPLAQRMRSKATATKNTRAAKSKSKPRKKRVTDNEDEDDFSTSASSSSDDDDDDDDDDDDPEHKGRKEKPKRKRIPVGERHLHRIIDCHICHQKFKKAIRYEEHMKYHNDLLPFQCKVESCKKGFTTANGLRIHVDHAHTELSEVHACSVEGCGKTFPRIRLLTFHMKKVHNISKSAAPLRDFPCTECETVFRCPTALKKHMYKHTGEELPYPCNICGKRFVINSALRDHLMRHAGIKNHVCPYCGVGKTTRQEWNAHILTHTKEKKFKCRQCDHASHNKQALSNHVKVVHMKIKNFACQYCGKTFGKSHACKVHERTHTGEKCCECKICGKIFLCEKSLTKHLKTHEKRDLPPVDIHRPLNIPLPVASHLPDHMQQQQMPGDNLMVGQNAADDLLKACGGGPPGVGTAAGAAKPKNSRRVQRVDISQLAGTSVNPIPSVSVPSWSPQVNFTKKEGQHICPGCGRGFNNIGNMKLHYKIIHEKVKDFACRFCPKRFSKAQILRHHEWIHTGEKPFECKICGKHFRQETALKKHIKTHDKPNRRHYPEKTDPSPPFQHKIEPREIDREPRNYEQYQDPAAERAAATAELLAHQIEENEAKRKADIERRKIQEAACEQLNKLQKQQEIEKATTSYDGYYAQKAQAEGISVDALKIDHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01570408;
- 90% Identity
- -
- 80% Identity
- -