Basic Information

Insect: Drosophila suboccidentalis
Gene Symbol: -
Assembly: GCA_037043435.1
Location: JBAMBK010002596.1:159427-162578[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00025 0.019 15.7 5.8 1 23 167 190 167 190 0.97

2 16 0.0014 0.1 13.3 3.1 1 23 228 251 228 251 0.96

3 16 0.0015 0.11 13.2 3.2 1 23 317 340 317 340 0.96

4 16 0.013 0.98 10.3 0.4 2 23 392 413 391 413 0.96

5 16 3.2 2.3e+02 2.8 0.7 1 20 526 545 526 547 0.75

6 16 0.022 1.6 9.6 0.6 1 23 556 578 556 578 0.94

7 16 0.00028 0.021 15.5 0.6 1 23 585 608 585 608 0.96

8 16 0.00017 0.012 16.3 1.3 2 23 616 637 615 637 0.96

9 16 0.0029 0.21 12.4 0.1 3 22 665 684 663 687 0.89

10 16 0.0035 0.26 12.1 0.8 1 23 725 748 725 748 0.96

11 16 0.043 3.1 8.7 0.7 1 22 755 776 755 776 0.97

12 16 0.00092 0.067 13.9 0.9 1 23 785 808 785 808 0.97

13 16 1.8e-05 0.0013 19.3 0.5 1 23 827 850 827 850 0.97

14 16 0.042 3.1 8.7 0.2 1 23 860 882 860 882 0.94

15 16 1.2e-05 0.00089 19.8 1.7 1 23 888 910 888 910 0.99

16 16 5.7e-05 0.0042 17.7 0.9 1 23 916 938 916 938 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00025	0.019	15.7	5.8	1	23	167	190	167	190	0.97
2	16	0.0014	0.1	13.3	3.1	1	23	228	251	228	251	0.96
3	16	0.0015	0.11	13.2	3.2	1	23	317	340	317	340	0.96
4	16	0.013	0.98	10.3	0.4	2	23	392	413	391	413	0.96
5	16	3.2	2.3e+02	2.8	0.7	1	20	526	545	526	547	0.75
6	16	0.022	1.6	9.6	0.6	1	23	556	578	556	578	0.94
7	16	0.00028	0.021	15.5	0.6	1	23	585	608	585	608	0.96
8	16	0.00017	0.012	16.3	1.3	2	23	616	637	615	637	0.96
9	16	0.0029	0.21	12.4	0.1	3	22	665	684	663	687	0.89
10	16	0.0035	0.26	12.1	0.8	1	23	725	748	725	748	0.96
11	16	0.043	3.1	8.7	0.7	1	22	755	776	755	776	0.97
12	16	0.00092	0.067	13.9	0.9	1	23	785	808	785	808	0.97
13	16	1.8e-05	0.0013	19.3	0.5	1	23	827	850	827	850	0.97
14	16	0.042	3.1	8.7	0.2	1	23	860	882	860	882	0.94
15	16	1.2e-05	0.00089	19.8	1.7	1	23	888	910	888	910	0.99
16	16	5.7e-05	0.0042	17.7	0.9	1	23	916	938	916	938	0.98

Sequence Information

Coding Sequence: ATGACAAGGACATGTAGAGTCTGCGGTGGCGCAGATGGACGCTATTGGATTGAGACGCCAGTCGAAAAATACGCAGAGAAAACATTCAATCAACTGCTGTTGGAGCTAACCAGACTTGAGGTCGCTTTGGATCGAGCTGACAAGCTGCCGCCCTGGCTTTGCCGCAACTGTGCACAGAGGTTGGAAAATGCATACGATTTTGTCGTGCAAGCGCGGAAAACTCACGAGCTTTGGATCGAGAAACTGGCAACAGAAGCAGCTCTGGATGATGCTGAAAAAGGCACTTTGGAATGCCTGCGAGAGGCGCCAATACAGTTGCTGGAGATTGAGGGAGTGACAATTAAAATGGAAGAGCCCTCTGAACCCGCCATGCCCCAAAGTGACCCAACCATTTCAGTTGATCCGCTCATCAAGAAAAACCTAGACGATGGTAGCGATGATGAAGACGACGTGCCGCTAAAGCAACGCAAAGCCGACTGCGCAAAATTGCCAATGTTACACAAGTGCAATAGATGCGACAAAACCTTTAGATATGTGACAAATCTCTTCAGGCACAAACAGCGAGATCACAGTCCTGTTCCAAGCAAGGCAAAGAACAAATCAGGAGCGGCAAATGCAAGTGCTGAACGCTCAGAGCCATTCCTCCACAATTCGGACGtggacgatgatgatgataactACTACAAATGTGATCAGTGCGATAAGTCCTATAAGTACATAATGCTCCTCATCAAGCATAAGCACAAAGCGCACGGCGCCAACCAGTTGCCAGCGGAGCCAATGCCAATTCGAAGAAGCGAATCTTGCTCGGAGCAAACTCCTAAAACCATAACAACTCAGCGTCAGCGCTCAAAGGCGCCCAGCTCAGATTCCTTGGTGCATAGTTTAATCAAAGAGATTAAaacACCTGAGGAGGACGACGCAGACTGCACAGGCTCCGACAATTATTACAAGTGCGATCAATGTGACAGGTCCTACAAATATATCGTGAGTCTCATCAAGCACAAGCACAAGGAGCACAATGAGTACAAGGATTCCGAAGAGGATGAGGACGAAGCATCCTCATCCACTTATGCTGCAGCGAACCCTTCAATGTCGAAGCCTTCACGCATCGACCGGAGGGTGAAGAGCTTCGATCTACATCGCTGCAAGCCGAATGGCTCCAAGGAGATTCAATGTATGGTCTGTCTGCGAAGATTTGTCAAACTGAGAGAGCTGCGCGATCACCTCAAAGCACATCCCAAAGACTTTACATTCGAGGGTCACGGCGAGCCCATTGAGCGCATTGCTGAGGGCTTTTACAGGACCGCCGTGGAATCAACGGCTGTCGGCCTGAAAAGGCGTATTCTAAATGATCTCGACATTGGCATGTATGGCCGCTATTATTCCATAACCAATGAGGCGCGTTACGAGATGAACCTGGACAGCTCGGACACGGACAGCGACGGCGAGGCGGGAGTTGTTGAGCGTCGCAGCTATGCCTGCGAACTGTGTGATTCGCCCTCCGCCATTTGGCCACGAAAATTTCAGCTGCATGAGCATCATCGTCAGGAACACACTTGGCTGGAGGCGCCCTACGTCTGTCAGCGCTGTGATTCGCGCTTCCTGAGCGCCCAGCTGCTCGACCATCATACGCAGAAACTATGCCAGAATACTCTAAAGCGTTTCATGTGCGACAAGTGCCCGCAGCGATTCTTCTGGCGTCGTAATCTGCGTGCACATCTCGTTGAGCACAAGAACAAGCAAGAGAATTACCCATGTGATCAGTGCTCACGCAGTTTTCAGGATAAAAGTGCCGTGACGAAGCACAAGCTCATGCTTCACGATGTCAGCAATGAGCTGATACCTTGTCGCTGGTGCACACGGACATTCTACCGCCCCGCCCTGCTGCATAAGCATGTGAGGCGTCATGGCTTCACTGGAGAGGATCTGCCCTTGGCTGAGACACTGCTGGCGGACGCCGCCAAGCCATCCGGTCCAAAGACAATCATTTGCAAGCTATGCGACATGCAGTTCATCAGCATTGCCGATCTGCGAAGACACATTTCAATGCAGGCACACAGCGTTGACTTTTGCAATTATATGATTAGTACACAGGATGGATTCGAACTGCAGCTGGATGAGACGGACGATAGCGATGAAGAGACCCCTGCTGGATCTGCTGGCAGATCCTACCGGTGTGATCTATGCGATATGGCCTTCCAGCGTCGAAGGGACATGAGCGAGCATCAGTATTCCCTGCACACATTCGATAAATTGCCCTATTCCTGTGAGCAATGCATCTACAAGACAGTTGACAAGAGCATGCTGGAACATCATTTGCGCACACAGTGCCTAAACCAGGAGAAGAAATTCAAGTGCTCCCGTTGTGGCTACAAATTCATGTGGAAGGAAAATTTGGAACAGCATATGGCCAGCCAACATTCCAAATCTTCCAATCAGACGACCGTTGCGACCAAGCGAAGTCGTCGCTTTAGATACCAGTGTCCGCACTGCTGGCGCTCCTTTGTGGTCCAGCCCAGTCTGGACAAGCACATACGTGACATGCACGTGGCCAAAAAGAATCCCGGCAAGAAGTATCTATGCTCATTGTGCGGCCTGGAGTCGCTCACTCCCAACAAGCTCAACATCCACATGCGCCGTCACAACGGCGAGAAGCCATTCAAATGCGATCTCTGCGACATGTCCTTTACAGTTTACTATGAACTCAAGGTTCATCGTCGAAAGCACACGGGCGAGCGACCCTATCAATGTACTTTCTGTGCCAAGGATTTCGCACGTCCGGACAAGCTAAGGCGACATGTTTACATGCACAGCGTTAAGCGTTAA
Protein Sequence: MTRTCRVCGGADGRYWIETPVEKYAEKTFNQLLLELTRLEVALDRADKLPPWLCRNCAQRLENAYDFVVQARKTHELWIEKLATEAALDDAEKGTLECLREAPIQLLEIEGVTIKMEEPSEPAMPQSDPTISVDPLIKKNLDDGSDDEDDVPLKQRKADCAKLPMLHKCNRCDKTFRYVTNLFRHKQRDHSPVPSKAKNKSGAANASAERSEPFLHNSDVDDDDDNYYKCDQCDKSYKYIMLLIKHKHKAHGANQLPAEPMPIRRSESCSEQTPKTITTQRQRSKAPSSDSLVHSLIKEIKTPEEDDADCTGSDNYYKCDQCDRSYKYIVSLIKHKHKEHNEYKDSEEDEDEASSSTYAAANPSMSKPSRIDRRVKSFDLHRCKPNGSKEIQCMVCLRRFVKLRELRDHLKAHPKDFTFEGHGEPIERIAEGFYRTAVESTAVGLKRRILNDLDIGMYGRYYSITNEARYEMNLDSSDTDSDGEAGVVERRSYACELCDSPSAIWPRKFQLHEHHRQEHTWLEAPYVCQRCDSRFLSAQLLDHHTQKLCQNTLKRFMCDKCPQRFFWRRNLRAHLVEHKNKQENYPCDQCSRSFQDKSAVTKHKLMLHDVSNELIPCRWCTRTFYRPALLHKHVRRHGFTGEDLPLAETLLADAAKPSGPKTIICKLCDMQFISIADLRRHISMQAHSVDFCNYMISTQDGFELQLDETDDSDEETPAGSAGRSYRCDLCDMAFQRRRDMSEHQYSLHTFDKLPYSCEQCIYKTVDKSMLEHHLRTQCLNQEKKFKCSRCGYKFMWKENLEQHMASQHSKSSNQTTVATKRSRRFRYQCPHCWRSFVVQPSLDKHIRDMHVAKKNPGKKYLCSLCGLESLTPNKLNIHMRRHNGEKPFKCDLCDMSFTVYYELKVHRRKHTGERPYQCTFCAKDFARPDKLRRHVYMHSVKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00579434;
90% Identity: iTF_00528986;
80% Identity: -